scholarly journals Accelerating the knowledge of Peruvian Chalcididae (Insecta,  Hymenoptera, Chalcidoidea) with integrative taxonomy

2019 ◽  
Vol 7 ◽  
Author(s):  
Bruno Cancian de Araujo ◽  
Marcelo Tavares ◽  
Thales Renan Brotto ◽  
Juliana Silva-Freitas ◽  
Max Estefani Santos ◽  
...  
Keyword(s):  
New Species ◽  
Dna Barcoding ◽  
Dna Sequences ◽  
Fold Increase ◽  
Integrative Taxonomy ◽  
Morphological Data ◽  
Peruvian Amazon ◽  
Insect Biodiversity ◽  
Canopy Fogging ◽  
Molecular Dataset

We present the first regional inventory of the fauna of Chalcididae in the Peruvian Amazon, with a nearly 6-fold increase in the number of species recorded for the country. A total of 418 specimens of Chalcididae were collected between 2000 and 2017 at the Panguana Reserve, Peruvian Amazon, 400 of which were obtained using Malaise traps and the remaining 18 specimens by canopy fogging. The morphological analyses indicated that these specimens represent 183 species of Chalcididae in 10 different genera, with 173 new to Peru and 134 potentially new species. We submitted 268 specimens, representing 167 species, to DNA barcoding. Of these, 141 specimens yielded sequences, 136 of them with a minimum of 300 bp. Sixty specimens were assigned a BIN by the Barcode of Life Database System (BOLD), resulting in 50 BINs. A cluster analysis of 138 individuals that yielded DNA sequences longer than 100 bp revealed 118 MOTUs (molecular operative taxonomic units), all of them highly congruent with the morphological data. Prior to the present study, 37 species in 9 genera of Chalcididae were known from Peru. With our results, this number was increased to 210 species in 13 genera. The present study is the result of a joint effort between the SNSB - Zoologische Staatssammlung München, Germany (ZSM) and the Insect Biodiversity Laboratory of the Universidade Federal do Espírito Santo, Vitória, Brazil (LaBI-UFES), intending to apply an accelerated taxonomic treatment of the Chalcididae of the Panguana reserve using traditional morphological approaches in combination with DNA barcoding. The complete molecular dataset and associated voucher information is publicly available through BOLD. The new species that were discovered as part of the study are being formally described elsewhere as part of taxonomic treatments of Neotropical and world generic revisions at LaBI-UFES.

scholarly journals Integrative taxonomy ofMetrichiaRoss (Trichoptera: Hydroptilidae: Ochrotrichiinae) microcaddisflies from Brazil: descriptions of twenty new species

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2009 ◽  
Author(s):  
Allan P.M. Santos ◽  
Daniela M. Takiya ◽  
Jorge L. Nessimian
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Mitochondrial Gene ◽  
Dna Barcode ◽  
First Record ◽  
Integrative Taxonomy ◽  
Morphological Data ◽  
Mato Grosso ◽  
Intraspecific Divergence ◽  
Coi Sequences

Metrichiais assigned to the Ochrotrichiinae, a group of almost exclusively Neotropical microcaddisflies.Metrichiacomprises over 100 described species and, despite its diversity, only one species has been described from Brazil so far. In this paper, we provide descriptions for 20 new species from 8 Brazilian states:M. acuminatasp. nov.,M. azulsp. nov.,M. bonitasp. nov.,M. bracuisp. nov.,M. caracasp. nov.,M. circuliformesp. nov.,M. curtasp. nov.,M. farofasp. nov.,M. forcepssp. nov.,M. formosinhasp. nov.,M. goianasp. nov.,M. itabaianasp. nov.,M. longissimasp. nov.,M. peludasp. nov.,M. rafaelisp. nov.,M. simplessp. nov.,M. talhadasp. nov.,M. teresp. nov.,M. ubajarasp. nov., andM. vulgarissp. nov.DNA barcode sequences (577 bp of the mitochondrial gene COI) were generated for 13 of the new species and two previously known species ofMetrichiaresulting in 64 sequences. In addition, COI sequences were obtained for other genera of Ochrotrichiinae (Angrisanoia,Nothotrichia,Ochrotrichia,Ragatrichia, andRhyacopsyche). DNA sequences and morphological data were integrated to evaluate species delimitations. K2P pairwise distances were calculated to generate a neighbor-joining tree. COI sequences also were submitted to ABGD and GMYC methods to assess ‘potential species’ delimitation. Analyses showed a conspicuous barcoding gap amongMetrichiasequences (highest intraspecific divergence: 4.8%; lowest interspecific divergence: 12.6%). Molecular analyses also allowed the association of larvae and adults ofMetrichia bonitasp. nov.from Mato Grosso do Sul, representing the first record of microcaddisfly larvae occurring in calcareous tufa (or travertine). ABGD results agreed with the morphological delimitation ofMetrichiaspecies, while GMYC estimated a slightly higher number of species, suggesting the division of two morphological species, each one into two potential species. Because this could be due to unbalanced sampling and the lack of morphological diagnostic characters, we have maintained these two species as undivided.

scholarly journals Benchmarking DNA barcodes: an assessment using available primate sequences

Genome ◽  
2006 ◽  
Vol 49 (7) ◽  
pp. 851-854 ◽  
Author(s):  
Mehrdad Hajibabaei ◽  
Gregory AC Singer ◽  
Donal A Hickey
Keyword(s):  
New Species ◽  
Cryptic Species ◽  
Dna Barcoding ◽  
Species Identification ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Primate Species ◽  
Dna Barcodes ◽  
Global Biodiversity ◽  
Efficient Sequence

DNA barcoding has been recently promoted as a method for both assigning specimens to known species and for discovering new and cryptic species. Here we test both the potential and the limitations of DNA barcodes by analysing a group of well-studied organisms—the primates. Our results show that DNA barcodes provide enough information to efficiently identify and delineate primate species, but that they cannot reliably uncover many of the deeper phylogenetic relationships. Our conclusion is that these short DNA sequences do not contain enough information to build reliable molecular phylogenies or define new species, but that they can provide efficient sequence tags for assigning unknown specimens to known species. As such, DNA barcoding provides enormous potential for use in global biodiversity studies.Key words: DNA barcoding, species identification, primate, biodiversity.

Morphological and molecular evidence of some Minuartia species (Caryophyllaceae) from Turkey, with a desciption of a new species

Phytotaxa ◽  
2019 ◽  
Vol 391 (2) ◽  
pp. 122 ◽  
Author(s):  
MURAT KOÇ ◽  
ERGIN HAMZAOĞLU ◽  
AHMET AKSOY
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Related Species ◽  
Phylogenetic Relationships ◽  
Morphological Data ◽  
Molecular Evidence ◽  
A New Species

The genus Minuartia is represented in Turkey by 34 taxa. Some interesting specimens were collected from Antalya province, and examined. These specimens resemble Minuartia meyeri, and M. multinervis from which differ by characters (macro-, and micromorphological) of inflorescence, alar pedicels, petals, sepals, capsules and seeds. Moreover, by using the DNA sequences of the ITS genes, phylogenetic relationships between this collected species, and the related species were investigated. As a result of the evaluation of molecular, and morphological data, we proposed to described the population from Antalya as a new species for the science. A description, pictures, distribution, habitat, and IUCN category are given.

Nine new species of the subgenus Stegana (Steganina) from China, with DNA barcoding information (Diptera: Drosophilidae)

Zootaxa ◽  
2019 ◽  
Vol 4576 (1) ◽  
pp. 81
Author(s):  
BINGXUE LI ◽  
YUAN ZHANG ◽  
HONGWEI CHEN
Keyword(s):  
New Species ◽  
Cytochrome C ◽  
Dna Barcoding ◽  
Cytochrome C Oxidase ◽  
Molecular Analysis ◽  
Dna Sequences ◽  
Mitochondrial Cytochrome ◽  
Neighbor Joining ◽  
Species Groups ◽  
Mtcoi Gene

Eleven (two known and nine new) species of the subgenus Stegana (Steganina) from China are described or redescribed: S. (S.) longifibula Takada, 1968, S. (S.) toyaensis Okada & Sidorenko, 1992, S. (S.) biflava sp. nov., S. (S.) flavivittata sp. nov., S. (S.) hirtifoliacea sp. nov., S. (S.) latitabula sp. nov., S. (S.) panda sp. nov., S. (S.) pinguifoliacea sp. nov., S. (S.) spatulata sp. nov., S. (S.) stachydifolia sp. nov. and S. (S.) unguiculata sp. nov.; they are assigned into the coleoptrata, ornatipes and undulata species groups, respectively. A total of 130 DNA sequences of partial mitochondrial cytochrome c oxidase subunit I (mtCOI) gene of 38 species (including the 11 species) of above-mentioned three groups are newly obtained in this study. These sequences and other available barcoding sequences of the three groups are involved in a molecular analysis using neighbor-joining (NJ) method, in order to assess the availability of DNA barcoding for delimiting the Steganina species. The result indicates that all the sampled Steganina morphospecies within the three groups are monophyletic.  

The bee Ruizanthedella mutabilis Spinola (Hymenoptera: Halictidae): a very common but poorly known species studied using integrative taxonomy

Zootaxa ◽  
2019 ◽  
Vol 4563 (1) ◽  
pp. 191
Author(s):  
ROCÍO A. GONZÁLEZ-VAQUERO ◽  
ARTURO ROIG-ALSINA
Keyword(s):  
Dna Barcoding ◽  
New Records ◽  
Atlantic Coast ◽  
Abundant Species ◽  
Integrative Taxonomy ◽  
Junior Synonym ◽  
Morphological Data ◽  
Valid Species ◽  
The Andes ◽  
Argentinean Patagonia

Ruizanthedella mutabilis (Spinola) is a very abundant species in Chile and the northwest of Argentinean Patagonia. In this contribution, Halictus nigrocaeruleus Spinola 1851 is established as a junior synonym of R. mutabilis (Spinola 1851), after considering morphological data, DNA barcoding results, and biological observations. The variability in the colouration of the metasoma has been incorrectly used to distinguish these colour forms as valid species. New records enlarge the distribution of the species in Argentina, from the Andes to the Atlantic coast. 

Description of a new genus and two new species of killifish (Cyprinodontiformes: Nothobranchiidae) from West Africa, with a discussion of the taxonomic status of Aphyosemion maeseni Poll, 1941

Zootaxa ◽  
2009 ◽  
Vol 2294 (1) ◽  
pp. 1-22 ◽  
Author(s):  
RAINER SONNENBERG ◽  
ECKHARD BUSCH
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
New Genus ◽  
Nuclear Dna ◽  
Taxonomic Status ◽  
Morphological Characters ◽  
Color Pattern ◽  
Monophyletic Group ◽  
Morphological Data ◽  
Adult Males

The phylogeny of the West African genus Archiaphyosemion was studied with mitochondrial and nuclear DNA sequences. The results of the combined dataset presented here did not support a monophyletic group. After the exclusion of the type species of the genus, A. guineense, the remaining species form a well-supported monophyletic group. Based on these molecular results and supported by morphological data, we suggest a new name for this group, Nimbapanchax, new genus. Additionally, based on a recent collection in Guinea, two new Nimbapanchax species were described. The taxon Nimbapanchax leucopterygius, new species, is described for a nothobranchiid fish formerly misidentified as Archiaphyosemion maeseni (Poll, 1941). Nimbapanchax melanopterygius, new species, is described from the Mount Nimba region in southeastern Guinea. Both new Nimbapanchax species are clearly distinguished from their congeners by the coloration pattern of adult males. The results of the DNA data support the assumption based on color pattern and morphological characters that the new described species are sister taxa. The type of Aphyosemion maeseni Poll, 1941 was reexamined and transferred to the genus Epiplatys, a decision based on diagnostic morphological characters.

DNA barcoding and integrative taxonomy of Macrobiotus hufelandi C.A.S. Schultze 1834, the first tardigrade species to be described, and some related species

Zootaxa ◽  
2011 ◽  
Vol 2997 (1) ◽  
pp. 19 ◽  
Author(s):  
ROBERTO BERTOLANI ◽  
LORENA REBECCHI ◽  
ILARIA GIOVANNINI ◽  
MICHELE CESARI
Keyword(s):  
Dna Barcoding ◽  
Integrative Taxonomy ◽  
Genetic Distances ◽  
Type Locality ◽  
Morphological Data ◽  
New Taxon ◽  
Black Forest ◽  
Mt Dna ◽  
Additional Material ◽  
Starting Point

Within the framework of a DNA barcoding project on tardigrade species, a study was carried out on Macrobiotus hufelandi C.A.S. Schultze 1834, the first formally described tardigrade species. We used samples collected from the type locality and additional material from other European sites containing species of the “M. hufelandi group”. The study was performed by integrating morphological, karyological and molecular (mt-DNA cox1) information and comparing these data with morphological data from the type material. Several species from this group were found in the type locality of M. hufelandi (near Freiburg, Black Forest, Germany) and these were all barcoded. One was M. hufelandi, the other two were: Macrobiotus sandrae Bertolani & Rebecchi 1993 (originally described from the same locality), and Macrobiotus vladimiri Bertolani, Biserov, Rebecchi & Cesari in press (type locality Andalo, Italy), all with interspecific genetic distances of more than 19%. A fourth cryptic species, which had the same morphology as M. hufelandi but a genetic distance of 6.7%, was not described as a new taxon but named M. cf. hufelandi sp.1 for this study. Macrobiotus sandrae and M. vladimiri were also present (and barcoded) in Italy (Alps). Additional individuals (animals and eggs) were also found, and barcoded, in Italy (Apennines) and Switzerland that belonged to the haplogroup Macrobiotus cf. hufelandi sp. 1. These data together with other recent studies on tardigrade DNA barcoding represent a starting point for further studies on tardigrade biogeography, phylogeography and diversity.

Species diversity of Hyalinobatrachium glassfrogs (Amphibia: Centrolenidae) from the Guiana Shield, with the description of two new species

Zootaxa ◽  
2011 ◽  
Vol 3132 (1) ◽  
pp. 1 ◽  
Author(s):  
SANTIAGO CASTROVIEJO-FISHER ◽  
CARLES VILÀ ◽  
JOSÉ AYARZAGÜENA ◽  
MICHEL BLANC ◽  
RAFFAEL ERNST
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
French Guiana ◽  
Taxonomic Status ◽  
Integrative Taxonomy ◽  
Guiana Shield ◽  
Basic Information ◽  
Two New Species ◽  
Taxonomic Uncertainty ◽  
New Distribution

Basic information about the taxonomy, biology and distribution of Hyalinobatrachium glassfrogs of the Guiana Shield (GS) is scarce, ambiguous, and in many cases even contradictory. In this review we aim to clarify the current taxonomic status of this group by means of phenotypic (morphology, morphometrics and bioacoustics) and molecular (mitochondrial DNA sequences) comparisons. Eight species have previously been recognized for the GS: H. crurifasciatum, H. eccentricum, H. fleischmanni (initially described as Hylella cappellei in the GS), H. iaspidiense (with the putative synonym H. nouraguense), H. ignioculus, H. mesai, H. mondolfii, and H. taylori. Our data support the resurrection of H . cappellei from its synonymy with H. fleischmanni. Hyalinobatrachium crurifasciatum, H. eccentricum, and H. ignioculus are proposed as junior synonyms of H. cappellei. We show that none of the four paratypes of H. taylori belong to this species and we assign two to H. cappellei and two to H. mondolfii. Additional specimens previously identified as H. taylori are reassigned to H. cappellei, and hence H. taylori is redefined. Hyalinobatrachium nouraguense is confirmed as a junior syn-onym of H. iaspidiense. We also describe two new species of Hyalinobatrachium from French Guiana: Hyalinobatrachium kawense sp. nov. and Hyalinobatrachium tricolor sp. nov. In addition, and in concordance with the new taxonomic rearrangements, we provide diagnostic characters for all species, known distributions and main sources of references for their biology. We also report new distribution records for H. iaspidiense and H. mondolfii, and describe the formerly unknown tadpole of the later. Consequently, we recognize seven species of Hyalinobatrachium for the Guiana Shield: H. cappellei, H. iaspidiense, H. kawense sp. nov., H. mesai, H. mondolfii, H. taylori, and H. tricolor sp. nov. We discuss the suitability of integrative taxonomy as an approach to identify taxonomic uncertainty and consider its significance for conservation purposes. We also address the implications of our results to understand phylogeographic patterns in this area.

scholarly journals Integrative taxonomy reveals a new genus and new species of Philosciidae (Crustacea: Isopoda: Oniscidea) from the Neotropical region

2018 ◽  
Vol 96 (5) ◽  
pp. 473-485 ◽  
Author(s):  
Bianca L. Zimmermann ◽  
Ivanklin S. Campos-Filho ◽  
Paula B. Araujo
Keyword(s):  
New Species ◽  
New Genus ◽  
Neotropical Region ◽  
Integrative Taxonomy ◽  
Morphological Data ◽  
Nuclear Markers ◽  
Terrestrial Isopods ◽  
New Methods ◽  
A New Species

Although new methods and data are conquering space in the field of taxonomy, such as integrative taxonomy, most terrestrial isopod species are still described based only on morphology. Species of the genus Atlantoscia Ferrara and Taiti, 1981 were the first and are the unique terrestrial isopods from the Neotropics for which a molecular phylogeny was already conducted. Previous results indicated that this genus could be paraphyletic, and a more detailed analysis would be required. Our aim was to reconstruct the phylogeny of Atlantoscia using mitochondrial and nuclear markers and test its monophyly by integrating molecular and morphological data. We observed that, indeed, Atlantoscia is paraphyletic. Atlantoscia ituberasensis Campos-Filho, Lisboa and Araujo, 2013 and Atlantoscia rubromarginata Araujo and Leistikow, 1999 were placed in a new genus of terrestrial isopods, Paratlantoscia gen. nov., together with a new species described in the present study, Paratlantoscia robusta sp. nov. The new genus is defined by the presence of specialized respiratory areas in the pleopod exopods and its validity is highly corroborated by molecular analyses and by biogeographic information. This study highlights the importance of multiple and complementary perspectives as a way to improve the quality of species hypothesis and associated descriptions.

scholarly journals The taxonomy’s new clothes: a little more about the DNA-based taxonomy

Zootaxa ◽  
2011 ◽  
Vol 3025 (1) ◽  
pp. 66 ◽  
Author(s):  
LEANDRO M. SANTOS ◽  
LUIZ R. R. FARIA
Keyword(s):  
New Species ◽  
Dna Barcoding ◽  
Developing Country ◽  
Model Theory ◽  
Dna Sequences ◽  
Point Of View ◽  
Species Description ◽  
Dna Taxonomy ◽  
Actual Publication

The use of DNA sequences, including DNA barcoding, as a taxonomical tool has been happening for some time (Tautz et al., 2003; Hajibabaei et al., 2007; Packer et al., 2009). However, the description of new species based solely on DNA sequences is a new idea (Cook et al., 2010) and a new practice (Brower, 2010). Our aim is not to further polarize the war between advocates of strictly molecular or strictly morphological systematics (following, e.g., Pires & Marinoni 2010). The objectives here are (i) to present some arguments regarding the perils of the proposition of a model (theory) for solely DNA-based descriptions (Cook et al. 2010) and the actual publication (practice) of such descriptions (Brower 2010), (ii) to discuss some reasons why we believe that adopting strictly DNA taxonomy for species description, setting aside everything we have learned from classic taxonomy, may not be the best alternative and (iii) to present the point of view about these matters of a PhD candidate and a recently graduated PhD working with taxonomy in a developing country.

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