scholarly journals Distribution pattern and phylogeography of tree rats Chiromyscus (Rodentia, Muridae) in eastern Indochina

2021 ◽  
Vol 97 (1) ◽  
pp. 83-95
Author(s):  
Alexander E. Balakirev ◽  
Alexei V. Abramov ◽  
Viatcheslav V. Rozhnov
Keyword(s):  
Species Distribution ◽  
Morphological Traits ◽  
Morphological Diversity ◽  
Distribution Patterns ◽  
Molecular Data ◽  
Mitochondrial Genes ◽  
Formal Description ◽  
Cyt B ◽  
Mitochondrial Markers ◽  
Geographically Distributed

The study combines available data on species distribution in eastern Indochina to investigate the phylogeographical genetic and morphological diversity of tree rats (Chiromyscus, Rodentia, Muridae) and to specify their natural ranges. We examined the diversity and distribution of tree rats over its range, based on recent molecular data for mitochondrial (Cyt b, COI) and nuclear (IRBP, RAG1 and GHR) genes. The study presents the most complete and up-to-date data on the distribution and phylogeography of the genus in eastern Indochina. As revealed by mitochondrial genes, C. langbianis splits into at least four coherent geographically-distributed clades, whereas C. thomasi and C. chiropus form two distinctive mitochondrial clades each. Chiromyscus langbianis and C. chiropus show significant inconsistency in nuclear genes, whereas C. thomasi shows the same segregation pattern as can be traced by mitochondrial markers. The Northern and Southern phylogroups of C. thomasi appear to be distributed sympatrically with northern phylogroups of C. langbianis in most parts of eastern Indochina. The mitochondrial clades discovered are geographically subdivided and divergent enough to suspect independent subspecies within C. langbianis and C. thomasi. However, due to the insufficiency of obvious morphological traits, a formal description is not carried out here. The processes of recent fauna formation, species distribution patterns, dispersion routes and possible natural history in Indochina are discussed.

Phylogenetic Relationships of Species of Hypselobarbus (Cypriniformes: Cyprinidae): An Enigmatic Clade Endemic to Aquatic Systems of India

Zootaxa ◽  
2012 ◽  
Vol 3499 (1) ◽  
pp. 63
Author(s):  
M. ARUNACHALAM ◽  
M. RAJA ◽  
M. MURALIDHARAN ◽  
RICHARD L. MAYDEN
Keyword(s):  
Genetic Diversity ◽  
Morphological Study ◽  
Morphological Diversity ◽  
Molecular Data ◽  
Mitochondrial Genes ◽  
Morphological Evidence ◽  
Species Relationships ◽  
Peninsular India ◽  
Morphological And Molecular Data ◽  
Eleven Species

Very little is known about the diversity and systematics of the genus cypriniform genus Hypselobarbus. Currently, the genusincludes at least eleven species, all endemic to freshwater systems of Peninsular India. While these species are commonlyknown in India and are frequently used as a food source, little is known about the morphological diversity within and betweenspecies and nothing is known regarding intraspecific genetic diversity or species relationships. Herein, we examine the geneticdiversity in the genus for 11 mitochondrial genes for eleven populations representing nine of the known 11 species.Hypselobarbus is resolved as monophyletic, with the inclusion of P. carnaticus, and species relatioships are very stronglysupported. Because of the unambiguous relationships strongly supported B. carnaticus is allocated to Hypselobarbus. Thisresearch and ongoing morphological and molecular work with the genus supports the existence of additional new species inpeninsular India in need of further molecular and morphological study. Genetic diversity in the genus is high; for the twospecies wherein more than one sample, and the two of each are suspected to represent undescribed taxa, these populationsexhibited greater genetic divergence than that observed between any two of the other currently recognized species,corroborating our hypothesis based on morphological evidence. Clearly the genus warrants more thorough geographicsampling and examination of morphological and molecular data/analyses to reveal the natural lineages existing in this endemic and enigmatic genus.

Genetic evidence supports Sylvilagus mansuetus (Lagomorpha: Leporidae) as a subspecies of S. bachmani

Zootaxa ◽  
2016 ◽  
Vol 4196 (2) ◽  
pp. 289
Author(s):  
SERGIO TICUL ÁLVAREZ-CASTAÑEDA ◽  
CONSUELO LORENZO
Keyword(s):  
Phylogenetic Relationships ◽  
Morphological Traits ◽  
Nuclear Gene ◽  
Sister Group ◽  
Genetic Distances ◽  
Mitochondrial Genes ◽  
The Other ◽  
Cyt B ◽  
San Jose ◽  
Allopatric Distribution

Since Sylvilagus bachmani (Lagomorpha: Leporidae) from the Baja California Peninsula and S. mansuetus from San Jose Island, Mexico, display an allopatric distribution and are closely related, their taxonomy is unclear. The phylogenetic relationships among specimens of both species were evaluated using two mitochondrial genes (Cyt b, COI) and the beta-fibrinogen nuclear gene intron 7 (β-fib I7). The genetic analyses revealed that S. mansuetus was included within the S. bachmani clade as the sister-group of S. b. cerrosensis. The genetic distances among S. b. cerrosensis and mansuetus were relatively low (1.3% with Cyt b), similar to intraspecific distances observed within other species of Sylvilagus. We consider mansuetus to be a subspecies of S. bachmani, and the morphological traits previously used to differentiate the two taxa should be used to distinguish S. b. mansuetus from the other subspecies of S. bachmani. 

scholarly journals Analysis of Morphological and Molecular Genetic Diversity of Salicornia Iranica Akhani Wildlife Populations around Urmia Lake, Iran

2021 ◽  
Author(s):  
Mohammad Aghaei ◽  
Abbas Hassani ◽  
Hossein Nazemiyeh ◽  
Babak Abdollahi Mandoulakani ◽  
Mohammad Saadatian
Keyword(s):  
Genetic Diversity ◽  
Cluster Analysis ◽  
Morphological Traits ◽  
Molecular Genetic ◽  
Morphological Diversity ◽  
Molecular Data ◽  
Issr Markers ◽  
Shannon Index ◽  
Urmia Lake ◽  
Molecular Genetic Diversity

Abstract Salicornia is a halophyte plant capable of being irrigated with seawater, which can be used as an alternative food. Given this, it is necessary to study the potentials of this plant's morphological diversity in the natural environment. In this study, 33 wild populations of Salicornia were collected from different geographical areas around Urmia Lake during the flowering stage, and some morphological traits and 25 ISSR loci of the plant were measured. Based on morphological traits and the cluster analysis, Salicornia populations were divided into four groups. Overall, the high percentage of polymorphic gene loci (65.69%), the average number of effective alleles per gene locus (1.63), and the Shannon data index (0.540) indicate that ISSR markers can be used in Identify genetic diversity to be used. Molecular data cluster analysis divided the studied populations into two main groups, which included 12.12% and 87.88% of the populations, respectively. Based on the effective analysis of the population's genetic structure and the precise classification of individuals into suitable sub-populations, the value of K = 2 was calculated. The research findings indicated that markers UBC823, B, A7, and K, and with the Shannon index, effective allele, and large heterozygosity values are markers with the highest effectiveness compared to other markers utilized, and they are used better than other compounds in genetic distance. The findings of this study will aid in parental selection studies for breeding programs of salicornia in future.

scholarly journals Morphological traits – desiccation resistance – habitat characteristics: a possible key for distribution in woodlice (Isopoda, Oniscidea)

ZooKeys ◽  
2018 ◽  
Vol 801 ◽  
pp. 481-499 ◽  
Author(s):  
Diána Csonka ◽  
Katalin Halasy ◽  
Krisztina Buczkó ◽  
Elisabeth Hornung
Keyword(s):  
Species Distribution ◽  
Morphological Traits ◽  
Habitat Preferences ◽  
Regional Scale ◽  
Distribution Patterns ◽  
Habitat Characteristics ◽  
Desiccation Resistance ◽  
Phylogenetic Relations ◽  
Species Tolerance ◽  
Cuticle Thickness

Terrestrial isopods, as successful colonizers of land habitats, show a great variety in species distribution patterns on a global, continental, or regional scale. On a local, within-habitat level these patterns reflect the species’ tolerance limits and the presence of suitable hiding places (shelter sites, refugia). Humidity preference reflects a species’ capability for water retention which, in turn, depends on the integumental barrier. Desiccation resistance is a key feature in isopod survival under different environmental conditions. The present study shows a correlation between cuticle thickness and desiccation resistance under three relative humidity (RH) ranges (about 30, 75 and 100% RH) in nine species, relating these to the species’ differences in meso- and microhabitat choices. Habitat preferences are also associated with differences in cuticle surface morphology. The results support our hypothesis that species distribution and desiccation resistance are associated with particular cuticular morphological traits. Phylogenetic relations seem to be less important in desiccation resistance than cuticle thickness and external morphology.

Vegetation dynamics and species distribution patterns in the inland desert wadis of South Sinai, Egypt

2013 ◽  
Vol 39 (2) ◽  
pp. 93-110
Author(s):  
Fawzy M. Salama ◽  
Monier Abd El-Ghani ◽  
Salah El Naggar ◽  
Mohamed Aljarroushi
Keyword(s):  
Species Distribution ◽  
Vegetation Dynamics ◽  
Distribution Patterns ◽  
South Sinai

scholarly journals Relicts from Glacial Times: The Ground Beetle Pterostichus adstrictus Eschscholtz, 1823 (Coleoptera: Carabidae) in the Austrian Alps

Insects ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 84
Author(s):  
Wolfgang Paill ◽  
Stephan Koblmüller ◽  
Thomas Friess ◽  
Barbara-Amina Gereben-Krenn ◽  
Christian Mairhuber ◽  
...  
Keyword(s):  
Ground Beetle ◽  
Distribution Patterns ◽  
Morphological Characters ◽  
Molecular Data ◽  
Ice Age ◽  
Dispersal Ability ◽  
Austrian Alps ◽  
Alpine Regions ◽  
Extant Species ◽  
Limited Dispersal

The last ice age considerably influenced distribution patterns of extant species of plants and animals, with some of them now inhabiting disjunct areas in the subarctic/arctic and alpine regions. This arctic-alpine distribution is characteristic for many cold-adapted species with a limited dispersal ability and can be found in many invertebrate taxa, including ground beetles. The ground beetle Pterostichus adstrictus Eschscholtz, 1823 of the subgenus Bothriopterus was previously known to have a holarctic-circumpolar distribution, in Europe reaching its southern borders in Wales and southern Scandinavia. Here, we report the first findings of this species from the Austrian Ötztal Alps, representing also the southernmost edge of its currently known distribution, confirmed by the comparison of morphological characters to other Bothriopterus species and DNA barcoding data. Molecular data revealed a separation of the Austrian and Finish specimens with limited to no gene flow at all. Furthermore, we present the first data on habitat preference and seasonality of P. adstrictus in the Austrian Alps.

Levels of Spatial Variability: The “Community” Problem

1990 ◽  
Vol 5 ◽  
pp. 13-30 ◽  
Author(s):  
D. A. Springer ◽  
A. I. Miller
Keyword(s):  
Community Structure ◽  
Spatial Variability ◽  
Species Distribution ◽  
Distribution Patterns ◽  
The Past ◽  
Structure And Dynamics ◽  
Evolutionary Units ◽  
The Way

The way we view species distribution patterns, particularly at the level commonly referred to as the “community”, has changed over the past 70 years in biology and, subsequently, in paleontology. Because the degree to which species associations can be interpreted as ecological and evolutionary units depends ultimately on recognition and interpretation of faunal spatial variability, we need to understand the nature of this variability at all levels of resolution before we can adequately address questions of “community” structure and dynamics. While it is possible to recognize spatial variability at several levels, from the distributions of individuals within a species to the overall pattern created by the global biota, we must ask whether these patterns really comprise a hierarchy with natural discontinuities (Fig. 1), or whether it is more realistic to view them as a continuous variability spectrum.

scholarly journals Disentangling relationships among eastern Mediterranean Cymbalaria including description of a novel species from the southern Peloponnese (Greece)

2021 ◽  
Vol 307 (2) ◽  
Author(s):  
Pau Carnicero ◽  
Núria Garcia-Jacas ◽  
Llorenç Sáez ◽  
Theophanis Constantinidis ◽  
Mercè Galbany-Casals
Keyword(s):  
Eastern Mediterranean ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distribution Patterns ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Long Distance ◽  
Aegean Islands ◽  
Molecular Phylogenetic

AbstractThe eastern Mediterranean basin hosts a remarkably high plant diversity. Historical connections between currently isolated areas across the Aegean region and long-distance dispersal events have been invoked to explain current distribution patterns of species. According to most recent treatments, at least two Cymbalaria species occur in this area, Cymbalaria microcalyx and C. longipes. The former comprises several intraspecific taxa, treated at different ranks by different authors based on morphological data, evidencing the need of a taxonomic revision. Additionally, some populations of C. microcalyx show exclusive morphological characters that do not match any described taxon. Here, we aim to shed light on the systematics of eastern Mediterranean Cymbalaria and to propose a classification informed by various sources of evidence. We performed molecular phylogenetic analyses using ITS, 3’ETS, ndhF and rpl32-trnL sequences and estimated the ploidy level of some taxa performing relative genome size measures. Molecular data combined with morphology support the division of traditionally delimited C. microcalyx into C. acutiloba, C. microcalyx and C. minor, corresponding to well-delimited nrDNA lineages. Furthermore, we propose to combine C. microcalyx subsp. paradoxa at the species level. A group of specimens previously thought to belong to Cymbalaria microcalyx constitute a well-defined phylogenetic and morphological entity and are described here as a new species, Cymbalaria spetae. Cymbalaria longipes is non-monophyletic, but characterized by being glabrous and diploid, unlike other eastern species. The nrDNA data suggest at least two dispersals from the mainland to the Aegean Islands, potentially facilitated by marine regressions.

scholarly journals Combination of nuclear and mitochondrial markers as a useful tool to identify Ctenophthalmus species and subspecies (Siphonaptera: Ctenophthalmidae)

2021 ◽  
Author(s):  
Antonio Zurita ◽  
Cristina Cutillas
Keyword(s):  
Taxonomic Status ◽  
Molecular Study ◽  
Molecular Data ◽  
Point Of View ◽  
Morphological Data ◽  
Molecular Approach ◽  
Nuclear Marker ◽  
Mitochondrial Markers ◽  
Morphological Criteria ◽  
Mtdna Markers

AbstractCtenophthalmus is considered the largest genus within the Order Siphonaptera. From a morphological point of view, only males of this genus can be identified at species and subspecies levels using morphological keys, whereas there are no morphological criteria in order to classify females at these taxonomical levels. Furthermore, the amount of available molecular and phylogenetic data for this genus is quite scarce so far. The main objective of this work was to assess the utility of the combination of nuclear and mitochondrial markers with respect to their ability to differentiate among different subspecies within the Ctenophthalmus genus. With this purpose, we carried out a comparative morphological and molecular study of three different subspecies (Ctenophthalmus baeticus arvernus, Ctenophthalmus nobilis dobyi, and Ctenophthalmus andorrensis catalaniensis) in order to clarify and discuss its taxonomic status. In addition, our study complemented the molecular data previously provided for Ctenophthalmus baeticus boisseauorum and Ctenophthalmus apertus allani subspecies. We sequenced five different molecular markers: EF1-α, ITS1, ITS2, cox1, and cytb. Our results confirmed that morphological data by themselves are not able to discriminate among Ctenophthalmus female taxa; however, the combination of the nuclear marker EF1-α together with mtDNA markers cytb and cox1 constituted a useful taxonomical and phylogenetic tool to solve this issue. Based on these results, we consider that the use of this molecular approach should be gradually used within Ctenophthalmus genus in order to complement its classical taxonomy and clarifying the complex taxonomy of other congeneric species of fleas.

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