Geographic differences in trichothecene chemotypes of Fusarium graminearum in the Northwest and North of Iran

2013 ◽  
Vol 6 (2) ◽  
pp. 137-150 ◽  
Author(s):  
M. Davari ◽  
S.H. Wei ◽  
A. Babay-Ahari ◽  
M. Arzanlou ◽  
C. Waalwijk ◽  
...  
Keyword(s):  
Fusarium Graminearum ◽  
Fusarium Species ◽  
Elongation Factor ◽  
Morphological Characters ◽  
Head Blight ◽  
The Caspian Sea ◽  
Internal Transcribed Spacer Region ◽  
North West ◽  
The North ◽  
North Of Iran

The diversity and prevalence of Fusarium species and their chemotypes on wheat in the North-West and North of Iran was determined. Wheat in these areas is severely affected by Fusarium head blight, with Fusarium graminearum as prevalent species causing 96% of the infections in the North-West and 50% in the Northern provinces. Fungal isolates were identified based on morphological characters and sequences of the internal transcribed spacer region, and parts of translation elongation factor 1-? and RNA polymerase subunit II sequences. Phylogenetic and phylogeographic analyses show little haplotype variation between the F. graminearum strains collected from the different locations, but the isolates differ significantly in their trichothecene chemotypes as determined with a multilocus genotyping assay. F. graminearum strains producing 15-acetyldeoxynivalenol were abundant in Ardabil (North-West of Iran), while in Golestan province (North of Iran) at the other side of the Caspian Sea especially nivalenol producing strains and a variety of other Fusarium species were observed. Strains producing 3-acetyldeoxynivalenol were rarely found in both areas. This is the first detailed study on Fusarium infections in Iranian wheat, showing large differences in prevalent etiological agents and in mycotoxin chemotypes geographically.

Species and trichothecene genotype of pathogens causing Fusarium head blight of wheat in Nebraska, USA

2021 ◽  
Author(s):  
Esteban Valverde-Bogantes ◽  
Andreia Bianchini ◽  
Stephen Wegulo ◽  
Heather Hallen-Adams
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Species ◽  
Management Strategies ◽  
Elongation Factor ◽  
Head Blight ◽  
Single Spore ◽  
Additional Species ◽  
Growing Seasons ◽  
Worldwide Distribution ◽  
Pathogen Populations

Fusarium head blight (FHB) is an economically important disease caused by several Fusarium species affecting wheat and other small grain cereals. In recent years, reports of shifts in populations of FHB pathogens around the world have shown that these populations are dynamic and change continuously, often resulting in increased yield losses or changes in the mycotoxins produced in the grain, which highlights the need for increased vigilance. The objective of this research was to identify the species and trichothecene genotypes of FHB pathogens in Nebraska in order to monitor their populations and the major toxigenic risks in the state. A total of 74 single-spore Fusarium isolates were obtained from 42 FHB symptomatic wheat spikes collected from Nebraska fields during the growing seasons in 2015-2018. Most of the isolates were identified as F. graminearum (n=67) based on translation elongation factor 1α (TEF1), trichothecene 3-O-acetyltransferase (TRI101), and reductase (RED) sequences. Additional species included F. boothii (n=3), F. poae (n=2), F. acuminatum (n=1), and one isolate was an F. graminearum × F. boothii interspecific hybrid. All F. graminearum and F. boothii isolates had the 15-ADON trichothecene genotype. This study shows that F. graminearum is not the only pathogen causing FHB in Nebraska and helps expand knowledge on the worldwide distribution of F. boothii. The information obtained from this survey will be useful in developing effective FHB management strategies in Nebraska, since different pathogen populations can cause varying levels of disease intensity and can be selectively sensitive to management tactics.

scholarly journals Effects of fungicides applied at anthesis on Fusarium head blight and mycotoxins in wheat

2002 ◽  
Vol 55 ◽  
pp. 341-346 ◽  
Author(s):  
M.G. Cromey ◽  
R.A. Parkes ◽  
K.I. Sinclair ◽  
D.R. Lauren ◽  
R.C. Butler
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Field Trial ◽  
Fusarium Species ◽  
Microdochium Nivale ◽  
Yield Losses ◽  
Head Blight ◽  
Strobilurin Fungicides

Fusarium head blight (FHB) of wheat can cause yield losses of 3070 More importantly affected grain may be less palatable to stock than healthy grain and may contain mycotoxins A field trial in 2000/01 tested several fungicides and fungicide combinations for FHB control FHB incidence was 91 in untreated plots The greatest reduction of FHB incidence grain Fusarium and mycotoxins was achieved with triazoles a benzimadazole or a combination of these Strobilurin fungicides reduced FHB although less effectively than the triazoles and carbendazim but Fusarium incidence was greater in grain harvested from strobilurintreated plots than in grain from untreated plots Combining strobilurin fungicides with fungicides from other groups did not further reduce Fusarium levels in harvested grain Nine Fusarium species and Microdochium nivale were isolated from grain harvested from the trial Fusarium graminearum and F avenaceum were most commonly isolated with F crookwellense and F culmorum also common

scholarly journals Trichothecene Genotype of Fusarium graminearum Isolates from Soybean (Glycine max) Seedling and Root Diseases in the United States

Plant Disease ◽  
2014 ◽  
Vol 98 (7) ◽  
pp. 1012-1012 ◽  
Author(s):  
M. L. Ellis ◽  
G. P. Munkvold
Keyword(s):  
United States ◽  
North America ◽  
Fusarium Graminearum ◽  
Root Rot ◽  
Elongation Factor ◽  
Host Shift ◽  
The United States ◽  
Sensu Stricto ◽  
Head Blight ◽  
The Third

Fusarium graminearum is an economically important pathogen that causes Fusarium head blight of wheat, barley, and oat, and Gibberella ear and stalk rot of maize. More recently, F. graminearum was reported as a soybean seedling and root pathogen in North America (1,5), causing seed decay, damping-off, and brown to reddish-brown root rot symptoms. Type B trichothecene mycotoxins are commonly produced by F. graminearum, which can be categorized into three trichothecene genotypes; those that produce 3-acetyldeoxynivalenol (3-ADON), 15-acetyldeoxynivalenol (15-ADON), or nivalenol (NIV). The 15-ADON genotype is dominant in populations from small grains and maize in North America (4), but the 3-ADON genotype has recently been found (4). F. graminearum was known as a pathogen of wheat and maize in North America for over a century before it was reported as a soybean pathogen. Therefore, we hypothesized that recent reports on soybean could be associated with the appearance of the 3-ADON genotype. The objective of this research was to determine the trichothecene genotype of F. graminearum isolates from soybean in the United States. Thirty-eight isolates from soybean were evaluated. Twenty-seven isolates came from a 3-year survey for Fusarium root rot from 2007 to 2009 in Iowa. Other isolates (Ahmad Fakhoury, Southern Illinois University, Carbondale) were collected from soybean seedlings during a multi-state survey in 2012, and included three isolates from Illinois, three from Indiana, and five from Nebraska. Species identification and lineage of F. graminearum were confirmed by sequencing the translation elongation factor gene (EF1-α) using EF-1H and EF-2T primers. A maximum likelihood analysis of the EF1-α, including voucher strains from nine lineages of F. graminearum (2), placed all 38 isolates into lineage 7, F. graminearum sensu stricto (representative GenBank accessions KJ415349 to KJ415352). To determine the trichothecene genotype of each isolate we used three multiplex PCR assays. The first two assays targeted a portion of trichothecene biosynthesis genes Tri3 and Tri12 (4), while the third assay targeted portions of the Tri3, Tri5, and Tri7 genes (3). The PCR for the first two assays was conducted as described by Ward et al. (4) using four sets of primers: 3CON, 3NA, 3D15A, and 3D3A; and 12CON, 12NF, 12-15F, and 12-3F for the Tri3 and Tri12 genes, respectively. The PCR for the third assay was conducted as described by Quarta et al. (3) using the following primers: Tri3F971, Tri3F1325, Tri3R1679, Tri7F340, Tri7R965, 3551H, and 4056H. The amplification products were analyzed by gel electrophoresis. All 38 isolates produced amplicons consistent with the 15-ADON genotype; ~610 and 670 bp for the Tri3 and Tri12 genes, respectively (4), and two amplicons of ~708 and 525 bp for the Tri3/Tri5 genes (3). Our results indicated that the dominant trichothecene genotype among isolates of F. graminearum from soybean is 15-ADON, and the introduction of 3-ADON isolates does not explain the recent host shift of F. graminearum to soybean in North America. To our knowledge, this is the first assessment of trichothecene genotypes in F. graminearum populations from soybean from the United States. References: (1) K. E. Broders et al. Plant Dis. 91:1155, 2007. (2) K. O'Donnell et al. Fungal Gen. Biol. 41:600, 2004. (3) A. Quarta et al. FEMS Microbiol. Lett. 259:7, 2006. (4) T. D. Ward et al. Fungal Gen. Biol. 45:473, 2008. (5) A. G. Zue et al. Can. J. Plant Pathol. 29:35, 2007.

scholarly journals A Survey of Trunk Disease Pathogens within Citrus Trees in Iran

Plants ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 754
Author(s):  
Nahid Espargham ◽  
Hamid Mohammadi ◽  
David Gramaje
Keyword(s):  
Sequence Data ◽  
Fusarium Species ◽  
Elongation Factor ◽  
Morphological Characteristics ◽  
Nuclear Ribosomal Dna ◽  
Internal Transcribed Spacer Region ◽  
Lasiodiplodia Theobromae ◽  
Dna Sequence Data ◽  
Pathogenicity Tests ◽  
Citrus Trees

Citrus trees with cankers and dieback symptoms were observed in Bushehr (Bushehr province, Iran). Isolations were made from diseased cankers and branches. Recovered fungal isolates were identified using cultural and morphological characteristics, as well as comparisons of DNA sequence data of the nuclear ribosomal DNA-internal transcribed spacer region, translation elongation factor 1α, β-tubulin, and actin gene regions. Dothiorella viticola, Lasiodiplodia theobromae, Neoscytalidium hyalinum, Phaeoacremonium (P.) parasiticum, P. italicum, P. iranianum, P. rubrigenum, P. minimum, P. croatiense, P. fraxinopensylvanicum, Phaeoacremonium sp., Cadophora luteo-olivacea, Biscogniauxia (B.) mediterranea, Colletotrichum gloeosporioides, C. boninense, Peyronellaea (Pa.) pinodella, Stilbocrea (S.) walteri, and several isolates of Phoma, Pestalotiopsis, and Fusarium species were obtained from diseased trees. The pathogenicity tests were conducted by artificial inoculation of excised shoots of healthy acid lime trees (Citrus aurantifolia) under controlled conditions. Lasiodiplodia theobromae was the most virulent and caused the longest lesions within 40 days of inoculation. According to literature reviews, this is the first report of L. theobromae and N. hyalinum on citrus in Iran. Additionally, we report several Phaeoacremonium species, S. walteri, Pa. pinodella and C. luteo-olivacea on citrus trees for the first time in the world.

Fusarium spp. associated with root rot of pulse crops and their cross pathogenicity to cereal crops in Montana

Plant Disease ◽  
2020 ◽  
Author(s):  
Swarnalatha Moparthi ◽  
Mary Eileen Burrows ◽  
Josephine Mgbechi-Ezeri ◽  
Bright Agindotan
Keyword(s):  
Root Rot ◽  
Fusarium Species ◽  
Elongation Factor ◽  
Abundant Species ◽  
Cereal Crops ◽  
Fusarium Spp ◽  
Internal Transcribed Spacer Region ◽  
Translation Elongation ◽  
Pulse Crops ◽  
Disease Management Strategy

Root rot caused by Fusarium species is a major problem in the pulse growing regions of Montana. Fusarium isolates (n=112) were obtained from seeds and/or roots of chickpea, dry pea, and lentil. Isolates were identified by comparing the sequences of the internal transcribed spacer region and the translation elongation factor 1-α in Fusarium-ID database. Fusarium avenaceum was the most abundant species (28%), followed by F. acuminatum (21%), F. poae (13%), F. oxysporum (8%), F. culmorum (6%), F. redolens (6%), F. sporotrichioides (6%), F. solani (4%), F. graminearum (2%), F. torulosum (2%) and F. tricinctum (0.9%). The aggressiveness of a subset of 50 isolates that represent various sources of isolation was tested on three pulse crops and two cereal crops. Nonparametric analysis of variance conducted on ranks of disease severity indicated that F. avenaceum and F. solani isolates were highly aggressive on pea and chickpea. In lentil, F. avenaceum and F. culmorum were highly aggressive. In barley, F. avenaceum, F. solani, F. culmorum, and F. graminearum were highly aggressive. In wheat, F. avenaceum, F. graminearum, and F. culmorum were highly aggressive. Two F. avenaceum isolates were highly aggressive across all the crops tested and found to be cross pathogenic. One isolate of F. culmorum and an isolate of F. graminearum obtained from chickpea and lentil seed were highly aggressive on barley and wheat. The results indicate that multiple Fusarium spp. from seeds and roots can cause root rot on both pulse and cereal crops. Rotating these crops may still lead to an increase in inoculum levels, making crop rotation limited in efficacy as a disease management strategy.

scholarly journals Specific Detection and Identification of Fusarium graminearum Sensu Stricto Using a PCR-RFLP Tool and Specific Primers Targeting the Translational Elongation Factor 1α Gene

Plant Disease ◽  
2020 ◽  
Vol 104 (4) ◽  
pp. 1076-1086
Author(s):  
Mohamed Hafez ◽  
Ahmed Abdelmagid ◽  
Lorne R. Adam ◽  
Fouad Daayf
Keyword(s):  
Fusarium Graminearum ◽  
Elongation Factor ◽  
Sensu Stricto ◽  
Restriction Pattern ◽  
Head Blight ◽  
Specific Detection ◽  
Fusarium Spp ◽  
Elongation Factor 1Α ◽  
Detection And Identification ◽  
Unique Restriction

Fusarium graminearum is a toxigenic plant pathogen that causes Fusarium head blight (FHB) disease on cereal crops. It has recently shown to have cross-pathogenicity on noncereals (i.e., Fusarium root rot [FRR] on soybean) in Canada and elsewhere. Specific detection and differentiation of this potent toxigenic, trichothecene-producing pathogen among other closely related species is extremely important for disease control and mycotoxin monitoring. Here, we designed a PCR restriction fragment length polymorphism protocol based on the DNA sequence of the translational elongation factor 1α (TEF1α) gene. A unique restriction site to the enzyme HpaII is only found in F. graminearum sensu stricto strains among different Fusarium strains in the F. graminearum species complex (FGSC) and other Fusarium spp. associated with FHB in cereals and FRR in soybean. Partial amplification of the TEF1α gene with newly designed primers mh1/mh2 generated a 459-bp PCR fragment. Restriction digestion of the generated fragments with the HpaII enzyme generated a unique restriction pattern that can rapidly and accurately differentiate F. graminearum sensu stricto among all other Fusarium spp. A primer pair (FgssF/FgssR) specific to F. graminearum sensu stricto also was designed and can distinguish F. graminearum sensu stricto from all other Fusarium spp. in the FGSC and other closely related Fusarium spp. involved in FHB and FRR. This finding will be very useful for the specific detection of F. graminearum sensu stricto for diagnostic purposes as well as for the accurate detection of this pathogen in breeding and other research purposes.

scholarly journals Phylogeny and taxonomic revision of Kernia and Acaulium

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Lei Su ◽  
Hua Zhu ◽  
Yongchun Niu ◽  
Yaxi Guo ◽  
Xiaopeng Du ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Elongation Factor ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Large Set ◽  
Internal Transcribed Spacer Region ◽  
Tubulin Genes ◽  
Morphological Criteria ◽  
Molecular Phylogenetic

Abstract The genera Kernia and Acaulium comprise species commonly isolated from dung, soil, decaying meat and skin of animal. The taxonomy of these fungi has been controversial and relies mainly on morphological criteria. With the aim to clarify the taxonomy and phylogeny of these fungi, we studied all the available ex-type strains of a large set of species by means of morphological and molecular phylogenetic analyses. Phylogenetic analysis of the partial internal transcribed spacer region (ITS) and the partial 28S rDNA (LSU) showed that the genera Kernia and Acaulium were found to be separated in two distinct lineages in Microascaceae. Based on morphological characters and multilocus phylogenetic analysis of the ITS, LSU, translation elongation factor 1α and β-tubulin genes, the species in Kernia and Acaulium were well separated and two new combinations are introduced, i.e. Acaulium peruvianum and Acaulium retardatum, a new species of Kernia is described, namely Kernia anthracina. Descriptions of the phenotypic features and molecular phylogeny for identification are discussed for accepted species in two genera in this study.

The distribution of Fusarium graminearum and F. asiaticum causing Fusarium head blight of wheat in relation to climate and cropping system

Plant Disease ◽  
2021 ◽  
Author(s):  
Fei Xu ◽  
Wei Liu ◽  
Yuli Song ◽  
Yilin Zhou ◽  
Xiangming Xu ◽  
...  
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Cropping Systems ◽  
Cropping System ◽  
Northern Region ◽  
Climatic Conditions ◽  
Head Blight ◽  
The North ◽  
Colonization Period ◽  
Relative Prevalence

In the main wheat production area of China (The Huang Huai Plain, HHP), both Fusarium graminearum and F. asiaticum, the causal agents of Fusarium head blight (FHB), are present. We investigated whether the relative prevalence of F. graminearum and F. asiaticum is related to cropping systems and/or climate factors. A total of 1844 Fusarium isolates were obtained from 103 fields of two cropping systems: maize-wheat and rice-wheat rotations. To maximize the differences in climatic conditions, isolates were sampled from the north and south HHP region. Based on the phylogenetic analysis of EF-1α and Tri101sequences, 1207 of the 1844 isolates belonged to F. graminearum, and the remaining 637 isolates belonged to F. asiaticum. The former was predominant in the northern region: 1022 of the 1078 Fusarium isolates in the north were F. graminearum. The latter was predominant in the southern region: 581 of the 766 Fusarium isolates belonging to F. asiaticum. Analysis based on generalised linear modelling, the relative prevalence of the two species was associated more with climatic conditions than with the cropping system. Fusarium graminearum was associated with drier conditions, cooler conditions during the winter but warmer conditions in the infection and grain-colonization period, and with the maize-wheat rotation. The opposite was true for F. asiaticum. Except 15-ADON, the trichothecene chemotype composition of F. asiaticum differed between the two cropping systems. The 3-ADON was more prevalent in the maize-wheat rotation; whereas NIV more prevalent in the rice-wheat rotation. The results also suggested that environmental conditions in the overwintering period appeared to be more important than that in the infection and grain-colonization and pre-anthesis sporulation periods in affecting the relative prevalence of F. graminearum and F. asiaticum. More research is needed to study the effect of overwintering conditions on subsequent epidemic in the following spring.

scholarly journals Horticulture in Iran Can Be an Alternative to Petroleum and a Major Source of International Business with Unique Potential and Challenges

HortScience ◽  
2017 ◽  
Vol 52 (9) ◽  
pp. 1145-1147 ◽  
Author(s):  
Esmaeil Fallahi
Keyword(s):  
The Caspian Sea ◽  
Political Issues ◽  
Mountain Ranges ◽  
Horticultural Crops ◽  
The North ◽  
The World ◽  
North Of Iran ◽  
Deciduous Fruit ◽  
Alborz Mountain ◽  
Sea Area

The art and science of horticulture and horticultural crops are integral parts of Iranian’s rich and ancient culture and modern economy. Many deciduous fruit, flowers, and vegetables are native to Iran (Persia), and from there, they were distributed to the rest of the world through the Silk Road established by the Achaemenid, the Royal Pars Dynasty. Variations in climate and presence of numerous mountains, lakes, rivers, and natural springs have created a unique country capable of producing all types of fruits, vegetables, and flowers. Apples and other deciduous fruits are commercially produced in mountain ranges of Alborz and Zagrous and in many central provinces of Iran. The Caspian Sea area in the north of Iran is one of the most unique regions in the world where mild Mediterranean climate meshed with the adjacent Alborz mountain ranges has created a home to numerous species of edible horticultural plants, ranging from tea to cherries and pomegranates. Pistachio, olive, citrus, banana, and date are produced in Kerman, Fars, and Khuzestan regions. However, the Iranian horticultural industry faces many challenges, including global and regional political issues. Although some attempt has been made to preserve invaluable germplasm, a large number of native fruits, vegetables, and flowers are becoming extinct. Postharvest transportation and storage of horticultural crops is one of the most important issues facing Iranian horticulture. The future of horticulture in Iran can potentially be bright, and horticultural products have the potential to replace the oil income after reserves disappear, particularly if peace prevails in the region.

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