M2UNet++

2022 ◽  
pp. 256-273
Author(s):  
Devidas Tulshiram Kushnure ◽  
Sanjay Nilkanth Talbar

Liver segmentation is instrumental for decision making in the medical realm for the diagnosis and treatment planning of hepatic diseases. However, the manual segmentation of the hundreds of CT images is tedious for medical experts. Thus, it hampers the segmentation accuracy and is reliant on opinion of the operator. This chapter presents the deep learning-based modified multi-scale UNet++ (M2UNet++) approach for automatic liver segmentation. The multi-scale features were modified channel-wise using adaptive feature recalibration to improve the representation of the high-level semantic information of the skip pathways and improved the segmentation performance with fewer computational overheads. The experimental results proved the model's efficacy on the publicly available 3DIRCADb dataset, which offers significant complexity and variations. The model's dice coefficient value is 97.28% that is 7.64%, and 2.24% improved from the UNet and UNet++ model. The quantitative result analysis shows that the M2UNet++ model outperforms the state-of-the-art methods proposed for liver segmentation.

Medical imaging classification is playing a vital role in identifying and diagnoses the diseases, which is very helpful to doctor. Conventional ways classify supported the form, color, and/or texture, most of tiny problematic areas haven’t shown in medical images, which meant less efficient classification and that has poor ability to identify disease. Advanced deep learning algorithms provide an efficient way to construct a finished model that can compute final classification labels with the raw pixels of medical images. These conventional algorithms are not sufficient for high resolution images due to small dataset size, advanced deep learning models suffer from very high computational costs and limitations in the channels and multilayers in the channels. To overcome these limitations, we proposed a new algorithm Normalized Coding Network with Multi-scale Perceptron (NCNMP), which combines high-level features and traditional features. The Architecture of the proposed model includes three stages. Training, retrieve, fuse. We examined the proposed algorithm on medical image dataset NIH2626. We got an overall image classification accuracy of 91.35, which are greater than the present methods.


2021 ◽  
Author(s):  
Matan Fintz ◽  
Margarita Osadchy ◽  
Uri Hertz

AbstractDeep neural networks (DNN) models have the potential to provide new insights in the study of human decision making, due to their high capacity and data-driven design. While these models may be able to go beyond theory-driven models in predicting human behaviour, their opaque nature limits their ability to explain how an operation is carried out. This explainability problem remains unresolved. Here we demonstrate the use of a DNN model as an exploratory tool to identify predictable and consistent human behaviour in value-based decision making beyond the scope of theory-driven models. We then propose using theory-driven models to characterise the operation of the DNN model. We trained a DNN model to predict human decisions in a four-armed bandit task. We found that this model was more accurate than a reinforcement-learning reward-oriented model geared towards choosing the most rewarding option. This disparity in accuracy was more pronounced during times when the expected reward from all options was similar, i.e., no unambiguous good option. To investigate this disparity, we introduced a reward-oblivious model, which was trained to predict human decisions without information about the rewards obtained from each option. This model captured decision-sequence patterns made by participants (e.g., a-b-c-d). In a series of experimental offline simulations of all models we found that the general model was in line with a reward-oriented model’s predictions when one option was clearly better than the others.However, when options’ expected rewards were similar to each other, it was in-line with the reward-oblivious model’s pattern completion predictions. These results indicate the contribution of predictable but task-irrelevant decision patterns to human decisions, especially when task-relevant choices are not immediately apparent. Importantly, we demonstrate how theory-driven cognitive models can be used to characterise the operation of DNNs, making them a useful explanatory tool in scientific investigation.Author SummaryDeep neural networks (DNN) models are an extremely useful tool across multiple domains, and specifically for performing tasks that mimic and predict human behaviour. However, due to their opaque nature and high level of complexity, their ability to explain human behaviour is limited. Here we used DNN models to uncover hitherto overlooked aspects of human decision making, i.e., their reliance on predictable patterns for exploration. For this purpose, we trained a DNN model to predict human choices in a decision-making task. We then characterised this data-driven model using explicit, theory-driven cognitive models, in a set of offline experimental simulations. This relationship between explicit and data-driven approaches, where high-capacity models are used to explore beyond the scope of established models and theory-driven models are used to explain and characterise these new grounds, make DNN models a powerful scientific tool.


2020 ◽  
Vol 126 ◽  
pp. 108918
Author(s):  
David J. Winkel ◽  
Thomas J. Weikert ◽  
Hanns-Christian Breit ◽  
Guillaume Chabin ◽  
Eli Gibson ◽  
...  

2019 ◽  
Author(s):  
Ehsaneddin Asgari ◽  
Nina Poerner ◽  
Alice C. McHardy ◽  
Mohammad R.K. Mofrad

AbstractMotivationHere we investigate deep learning-based prediction of protein secondary structure from the protein primary sequence. We study the function of different features in this task, including one-hot vectors, biophysical features, protein sequence embedding (ProtVec), deep contextualized embedding (known as ELMo), and the Position Specific Scoring Matrix (PSSM). In addition to the role of features, we evaluate various deep learning architectures including the following models/mechanisms and certain combinations: Bidirectional Long Short-Term Memory (BiLSTM), convolutional neural network (CNN), highway connections, attention mechanism, recurrent neural random fields, and gated multi-scale CNN. Our results suggest that PSSM concatenated to one-hot vectors are the most important features for the task of secondary structure prediction.ResultsUtilizing the CNN-BiLSTM network, we achieved an accuracy of 69.9% and 70.4% using ensemble top-k models, for 8-class of protein secondary structure on the CB513 dataset, the most challenging dataset for protein secondary structure prediction. Through error analysis on the best performing model, we showed that the misclassification is significantly more common at positions that undergo secondary structure transitions, which is most likely due to the inaccurate assignments of the secondary structure at the boundary regions. Notably, when ignoring amino acids at secondary structure transitions in the evaluation, the accuracy increases to 90.3%. Furthermore, the best performing model mostly mistook similar structures for one another, indicating that the deep learning model inferred high-level information on the secondary structure.AvailabilityThe developed software called DeepPrime2Sec and the used datasets are available at http://llp.berkeley.edu/[email protected]


2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Jinlin Ma ◽  
Yuanyuan Deng ◽  
Ziping Ma ◽  
Kaiji Mao ◽  
Yong Chen

Accurate segmentation of liver images is an essential step in liver disease diagnosis, treatment planning, and prognosis. In recent years, although liver segmentation methods based on 2D convolutional neural networks have achieved good results, there is still a lack of interlayer information that causes severe loss of segmentation accuracy to a certain extent. Meanwhile, making the best of high-level and low-level features more effectively in a 2D segmentation network is a challenging problem. Therefore, we designed and implemented a 2.5-dimensional convolutional neural network, VNet_WGAN, to improve the accuracy of liver segmentation. First, we chose three adjacent layers of a liver model as the input of our network and adopted two convolution kernels in series connection, which can integrate cross-sectional spatial information and interlayer information of liver models. Second, a chain residual pooling module is added to fuse multilevel feature information to optimize the skip connection. Finally, the boundary loss function in the generator is employed to compensate for the lack of marginal pixel accuracy in the Dice loss function. The effectiveness of the proposed method is verified on two datasets, LiTS and CHAOS. The Dice coefficients are 92% and 90%, respectively, which are better than those of the compared segmentation networks. In addition, the experimental results also show that the proposed method can reduce computational consumption while retaining higher segmentation accuracy, which is significant for liver segmentation in practice and provides a favorable reference for clinicians in liver segmentation.


2020 ◽  
Author(s):  
S. Economides ◽  
C.J. Hourdakis ◽  
C. Pafilis ◽  
G. Simantirakis ◽  
P. Tritakis ◽  
...  

This paper concerns an analysis regarding the performance of X-ray equipment as well as the radiological safety in veterinary facilities. Data were collected from 380 X-ray veterinary facilities countrywide during the on-site regulatory inspections carried out by the Greek Atomic Energy Commission. The analysis of the results shows that the majority of the veterinary radiographic systems perform within the acceptable limits; moreover, the design and shielding of X-ray rooms as well as the applied procedures ensure a high level of radiological safety for the practitioners, operators and the members of the public. An issue that requires specific attention in the optimization process for the proper implementation of veterinary radiology practices in terms of radiological safety is the continuous training of the personnel. The above findings and the regulatory experience gained were valuable decision-making elements regarding the type of the regulatory control of veterinary radiology practices in the new radiation protection framework.


2018 ◽  
Vol 9 (01) ◽  
Author(s):  
Parul Gill ◽  
Poonam Malik ◽  
Pankaj Gill

The present study was undertaken to explore the decision making patterns of college girls in relation to clothing and their satisfaction level with these decision making patterns. Thirty under graduate college girls from Panipat city were approached to record their responses regarding decision making in relation to clothing and satisfaction level through a well structured questionnaire. It was found that most of the girls (56.66%) themselves made the decisions about the type of garment (Indian, western or both) they wear and majority of girls (70%) were highly satisfied with this decision making. Parents performed the role of buyers for their college going daughters' garments in most of the cases (63.33%) and the 73.33% girls had high level of satisfaction with this. In most of the cases (60%) the decision about the garment design was made by the girls themselves and they were highly satisfied with it. Keywords: clothing, college, girls, decision making.


2019 ◽  
Vol 33 (3) ◽  
pp. 89-109 ◽  
Author(s):  
Ting (Sophia) Sun

SYNOPSIS This paper aims to promote the application of deep learning to audit procedures by illustrating how the capabilities of deep learning for text understanding, speech recognition, visual recognition, and structured data analysis fit into the audit environment. Based on these four capabilities, deep learning serves two major functions in supporting audit decision making: information identification and judgment support. The paper proposes a framework for applying these two deep learning functions to a variety of audit procedures in different audit phases. An audit data warehouse of historical data can be used to construct prediction models, providing suggested actions for various audit procedures. The data warehouse will be updated and enriched with new data instances through the application of deep learning and a human auditor's corrections. Finally, the paper discusses the challenges faced by the accounting profession, regulators, and educators when it comes to applying deep learning.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Steven A. Hicks ◽  
Jonas L. Isaksen ◽  
Vajira Thambawita ◽  
Jonas Ghouse ◽  
Gustav Ahlberg ◽  
...  

AbstractDeep learning-based tools may annotate and interpret medical data more quickly, consistently, and accurately than medical doctors. However, as medical doctors are ultimately responsible for clinical decision-making, any deep learning-based prediction should be accompanied by an explanation that a human can understand. We present an approach called electrocardiogram gradient class activation map (ECGradCAM), which is used to generate attention maps and explain the reasoning behind deep learning-based decision-making in ECG analysis. Attention maps may be used in the clinic to aid diagnosis, discover new medical knowledge, and identify novel features and characteristics of medical tests. In this paper, we showcase how ECGradCAM attention maps can unmask how a novel deep learning model measures both amplitudes and intervals in 12-lead electrocardiograms, and we show an example of how attention maps may be used to develop novel ECG features.


Sign in / Sign up

Export Citation Format

Share Document