scholarly journals ESβL, AmpC and carbapenemase co-production in multi-drug resistant Gram-negative bacteria from HIV-infected patients in southwestern Nigeria

2021 ◽  
Vol 22 (1) ◽  
pp. 38-51
Author(s):  
F.M. Adeyemi ◽  
S.B. Akinde
Keyword(s):  
Control Measures ◽  
University Teaching ◽  
Teaching Hospitals ◽  
Multi Drug Resistance ◽  
Gram Negative Bacteria ◽  
Southwestern Nigeria ◽  
Gram Negative ◽  
Healthcare Facilities ◽  
Infection Control Measures ◽  
Tertiary Healthcare

Background: The rising global emergence of Gram-negative bacteria (GNB) producing β-lactam hydrolysing enzymes in clinical infections constitutes a growing public health threat. This study investigated the occurrence of co-production of extended spectrum β-lactamase (ESβL), AmpC β-lactamases, and carbapenemases among GNB isolated from HIVinfected patients in two tertiary healthcare facilities in southwest Nigeria.Methodology: A total of 115 GNB isolates previously recovered from HIV-infected patients at the Obafemi Awolowo University Teaching Hospitals Complex, Ile-Ife, and the State Specialist Hospital, Akure, were investigated. The isolates were characterized to species level with the Microbact 24E kit and screened for ESβL production using the double-disc test (DDT) and combination disc methods, AmpC using modified Hodge test (MHT) and AmpC EDTA disc, and carbapenemase production using the MHT and EDTA disc test. Antibiotic susceptibility testing (AST) was performed by the Kirby-Bauer disc diffusion method.Results: A total of 15 species of GNB were characterized. The AST profile of the isolates revealed high resistance rates to ampicillin (94.5%), tetracycline (74.5%), sulphamethoxazole-trimethoprim (66.3%), and lowest resistance to imipenem (10.9%). Multi-drug resistance (MDR) was observed in 93.6% while 98.8% of ESβL, AmpC, and carbapenemase-producing isolates had multiple antibiotic resistance (MAR) indices ≥ 0.2. ESβL production was detected in 53.9%, AmpC in 20.9% and carbapenemase in 25.2% of the isolates. ESβL, AmpC or carbapenemase or co-production of two or all three enzymes was detected in 80 (69.6%) isolates, while only 10.0% produced all three enzymes.Conclusion: The isolation of MDR bacteria and isolates co-producing β-lactam hydrolysing enzymes in immunocompromised individuals portend grave consequences. Routine screening for these enzymes in MDR bacteria will be highly essential to guide the institution of appropriate antibiotic therapy and infection control measures. Keywords: ESβL, AmpC, carbapenemase, HIV, MDR, clinical isolates, MHT, DDST   French Title: Coproduction d'ESβL, AmpC et carbapénémase dans des bactéries Gram-négatives multirésistantes de patients infectés par le VIH dans le sud-ouest du Nigéria Contexte: L'émergence mondiale croissante de bactéries à Gram négatif (GNB) produisant des enzymes d'hydrolyse de β-lactame dans les infections cliniques constitue une menace croissante pour la santé publique. Cette étude a examiné l'occurrence de la coproduction de β-lactamases à spectre étendu (ESβL), de  β-lactamases AmpC et de carbapénémases parmi les GNB isolés de patients infectés par le VIH dans deux établissements de santé tertiaires du sud-ouest du Nigéria. Méthodologie: Un total de 115 isolats de GNB précédemment récupérés de patients infectés par le VIH au complexe hospitalier universitaire Obafemi Awolowo, Ile-Ife, et au State Specialist Hospital, Akure, ont été  étudiés. Les isolats ont été caractérisés au niveau des espèces avec le kit Microbact 24E et criblés pour la  production d'ESβL en utilisant le test à double disque (DDT) et les méthodes de disques combinés, AmpC en utilisant le test Hodge modifié (MHT) et le disque AmpC EDTA, et la production de carbapénémase en utilisant le MHT et test de disque EDTA. Le test de sensibilité aux antibiotiques (AST) a été effectué par la méthode de diffusion de disque de Kirby-Bauer Résultats: Un total de 15 espèces de GNB ont été caractérisées. Le profil AST des isolats a révélé des taux derésistance élevés à l'ampicilline (94,5%), à la tétracycline (74,5%), au sulfaméthoxazole-triméthoprime (66,3%) età la plus faible résistance à l'imipénème (10,9%). Une résistance à plusieurs médicaments (MDR) a été observéedans 93,6% tandis que 98,8% des isolats producteurs d'ESβL, AmpC et carbapénémase avaient de multiples indices de résistance aux antibiotiques (MAR) ≥ 0,2. La production d'ESβL a été détectée dans 53,9%, AmpC dans 20,9% et carbapénémase dans 25,2% des isolats. ESβL, AmpC ou carbapénémase ou la coproduction de deux ou des trois enzymes a été détectée dans 80 isolats (69,6%), tandis que seulement 10,0% ont produit les trois enzymes. Conclusion: L'isolement des bactéries MDR et des isolats co-producteurs d'enzymes d'hydrolyse des β-lactamines chez les individus immunodéprimés laisse présager de graves conséquences. Le dépistage systématique de ces enzymes dans les bactéries MDR sera très essentiel pour guider la mise en place d'une antibiothérapie appropriée et de mesures de contrôle des infections. Mots-clés: ESβL, AmpC, carbapénémase, VIH, MDR, isolats cliniques, MHT, DDST

scholarly journals Genetic Analysis of mcr-1-Carrying Plasmids From Gram-Negative Bacteria in a Dutch Tertiary Care Hospital: Evidence for Intrapatient and Interspecies Transmission Events

2021 ◽  
Vol 12 ◽  
Author(s):  
Nikolaos Strepis ◽  
Anne F. Voor in ’t holt ◽  
Margreet C. Vos ◽  
Willemien H. A. Zandijk ◽  
Astrid P. Heikema ◽  
...  
Keyword(s):  
Medical Center ◽  
Tertiary Care ◽  
Control Measures ◽  
Interspecies Transmission ◽  
Gram Negative Bacteria ◽  
Care Hospital ◽  
Genetic Composition ◽  
Gram Negative ◽  
Infection Control Measures ◽  
Depth Analysis

The role of plasmids in the complex pandemic of antimicrobial resistance is increasingly being recognized. In this respect, multiple mobile colistin resistance (mcr) gene-carrying plasmids have been described. However, the characteristics and epidemiology of these plasmids within local healthcare settings are largely unknown. We retrospectively characterized the genetic composition and epidemiology of plasmids from mcr-1-positive bacterial isolates identified from patients from a large academic hospital in the Netherlands. Clinical Gram-negative bacteria with an MIC > 2 μg/mL for colistin, obtained from patients hospitalized at the Erasmus MC University Medical Center Rotterdam during the years 2010–2018, were screened for presence of the mcr-1 gene. Extracted plasmids from mcr-1-positive isolates were sequenced using a combination of short- and long-read sequencing platforms, characterized by incompatibility type and genetic composition and compared to publicly available mcr-1-carrying plasmid sequences. In 21 isolates from 14 patients, mcr-1 was located on a plasmid. These plasmids were of diverse genetic background involving Inc types IncX4, IncI2(delta), IncHI2, as well as double Inc types IncHI2/IncN and IncHI2/IncQ. mcr-1-carrying plasmids were found in Escherichia coli, Klebsiella pneumoniae, and Kluyvera georgiana, and within the chromosome of an ST147 K. pneumoniae isolate. In depth analysis indicated intrapatient, interpatient, and interspecies transmission events of mcr-1-carrying plasmids. In addition, our results show that the mcr-1 gene resides in a rich environment full of other (mcr-1 negative) plasmids and of many different Inc types, enabling interplasmidal transfer events and facilitating widespread dissemination of the mcr-1 gene. Multiple mcr-1-carrying plasmid transmission events had likely occurred among isolates from hospitalized patients. Recognition and identification of plasmid transmission events within hospitals is necessary in order to design and implement effective infection control measures.

scholarly journals Modern problems of antibiotic resistance gram-negative nosocomial infections in the Rostov region

2019 ◽  
Vol 10 (3) ◽  
pp. 91-96 ◽  
Author(s):  
O. Yu. Kutsevalova ◽  
I. O. Pokudina ◽  
D. A. Rozenko ◽  
D. V. Martynov ◽  
M. Yu. Kaminsky
Keyword(s):  
Resistance Mechanisms ◽  
Infectious Complications ◽  
Control Measures ◽  
Gram Negative Bacteria ◽  
Antimicrobial Drugs ◽  
Gram Negative ◽  
Infection Control Measures ◽  
Test Kit ◽  
Extended Spectrum Beta Lactamases ◽  
The City

Objectives: to analyze the prevalence of strains of gram-negative bacteria - pathogens of infectious complications resistant to carbapenems, including through the production of carbapenemases isolated from various clinical biomaterials in hospitalized patients of hospitals in the city of Rostov-on-Don.Materials and methods: 366 gram-negative bacterial isolates were studied, from patients from 16 wards, 9 treatment-and-prophylactic institutions of the city of Rostov-on-Don and the region. The study was conducted by traditional microbiological method. Species identification of strains and sensitivity to antimicrobial drugs were determined on a Vitek 2 automatic analyzer (BioMerieux, France). The strains insensitive to carbapenems were tested for the presence of carbapenemases using CIM-test. MBL was detected by the effect of suppression of their activity in the presence of EDTA. MBL genes were detected by PCR-RV test kit “AmpliSens MDR MBL-FL”, “AmpliSens MDR KPC/OXA-48-FL”. The conclusion about the production of BLRS was made by the presence of synergism of cephalosporins of III-IV generation with clavulanic acid by the method of double discs.Results: of the 366 isolates tested, gram-negative bacteria accounted for 74.2 %: Klebsiella pneumoniae — 33.0 %, Escherichia coli — 19.0 %, Acinetobacter baumannii — 18.0 %, Pseudomonas aeruginosa — 15.0 %. Resistance to carbapenems was detected in 90.9 % of A.baumannii strains, more than 50 % of P.aeruginosa and K.pneumoniae. LBR production was detected in more than 90 % of K.pneumoniae and about 80 % of E. coli. In A. baumannii and K.pneumoniae isolates, the presence of OXA and NDM genes was found, and in P.aeruginosa, VIM groups.Conclusion: enterobacteria resistant to beta-lactams, producing extended-spectrum beta-lactamases and carbapenemases are one of the leading causative agents of infectious complications in hospitals of Rostov-on-don and the region, almost not inferior in frequency of occurrence of bacteria of the genus Acinetobacter spp. and Paeruginosa. This determines the importance of detection of resistance mechanisms not only for the purpose of optimal etiotropic therapy, but also for epidemiological control of the spread of resistant strains and the development of infection control measures.

scholarly journals Multidrug-resistant organisms detected in refugee patients admitted to a University Hospital, Germany June‒December 2015

2016 ◽  
Vol 21 (2) ◽  
Author(s):  
Claudia Reinheimer ◽  
Volkhard A. J. Kempf ◽  
Stephan Göttig ◽  
Michael Hogardt ◽  
Thomas A. Wichelhaus ◽  
...  
Keyword(s):  
Confidence Interval ◽  
Multidrug Resistant ◽  
Control Measures ◽  
University Hospital ◽  
Healthcare Personnel ◽  
Gram Negative Bacteria ◽  
Gram Negative ◽  
Infection Control Measures ◽  
Multidrug Resistant Organisms ◽  
The University

Multidrug-resistant Gram-negative bacteria (MDR GNB) were found to colonise 60.8% (95% confidence interval: 52.3–68.9) of 143 refugee patients mainly from Syria (47), Afghanistan (29), and Somalia (14) admitted to the University Hospital Frankfurt, Germany, between June and December 2015. This percentage exceeds the prevalence of MDR GNB in resident patients four–fold. Healthcare personnel should be aware of this and the need to implement or adapt adequate infection control measures.

Electrophysiological Characterization of Transport Across Outer Membrane Channels from Gram-Negative Bacteria in Their Native Environment

2019 ◽  
Author(s):  
Jiajun Wang ◽  
Rémi Terrasse ◽  
Jayesh Arun Bafna ◽  
Lorraine Benier ◽  
Mathias Winterhalter
Keyword(s):  
Outer Membrane ◽  
Lipid Membrane ◽  
Membrane Vesicles ◽  
Outer Membrane Vesicles ◽  
Multi Drug Resistance ◽  
Gram Negative Bacteria ◽  
Membrane Channels ◽  
Gram Negative ◽  
Electrophysiological Characterization

Multi-drug resistance in Gram-negative bacteria is often associated with low permeability of the outer membrane. To investigate the role of membrane channels in the uptake of antibiotics, we extract, purify and reconstitute them into artificial planar membranes. To avoid this time-consuming procedure, here we show a robust approach using fusion of native outer membrane vesicles (OMV) into planar lipid bilayer which moreover allows also to some extend the characterization of membrane protein channels in their native environment. Two major membrane channels from <i>Escherichia coli</i>, OmpF and OmpC, were overexpressed from the host and the corresponding OMVs were collected. Each OMV fusion revealed surprisingly single or only few channel activities. The asymmetry of the OMV´s translates after fusion into the lipid membrane with the LPS dominantly present at the side of OMV addition. Compared to conventional reconstitution methods, the channels fused from OMVs containing LPS have similar conductance but a much broader distribution. The addition of Enrofloxacin on the LPS side yields somewhat higher association (<i>k<sub>on</sub></i>) and lower dissociation (<i>k<sub>off</sub></i>) rates compared to LPS-free reconstitution. We conclude that using outer membrane vesicles is a fast and easy approach for functional and structural studies of membrane channels in the native membrane.

scholarly journals Can Copper Products and Surfaces Reduce the Spread of Infectious Microorganisms and Hospital-Acquired Infections?

Materials ◽  
2021 ◽  
Vol 14 (13) ◽  
pp. 3444
Author(s):  
Joji Abraham ◽  
Kim Dowling ◽  
Singarayer Florentine
Keyword(s):  
Infection Control ◽  
Hospital Admissions ◽  
Copper Alloys ◽  
Well Being ◽  
Mortality Rates ◽  
Pathogen Transmission ◽  
Control Measures ◽  
Traditional Use ◽  
Healthcare Facilities ◽  
Infection Control Measures

Pathogen transfer and infection in the built environment are globally significant events, leading to the spread of disease and an increase in subsequent morbidity and mortality rates. There are numerous strategies followed in healthcare facilities to minimize pathogen transfer, but complete infection control has not, as yet, been achieved. However, based on traditional use in many cultures, the introduction of copper products and surfaces to significantly and positively retard pathogen transmission invites further investigation. For example, many microbes are rendered unviable upon contact exposure to copper or copper alloys, either immediately or within a short time. In addition, many disease-causing bacteria such as E. coli O157:H7, hospital superbugs, and several viruses (including SARS-CoV-2) are also susceptible to exposure to copper surfaces. It is thus suggested that replacing common touch surfaces in healthcare facilities, food industries, and public places (including public transport) with copper or alloys of copper may substantially contribute to limiting transmission. Subsequent hospital admissions and mortality rates will consequently be lowered, with a concomitant saving of lives and considerable levels of resources. This consideration is very significant in times of the COVID-19 pandemic and the upcoming epidemics, as it is becoming clear that all forms of possible infection control measures should be practiced in order to protect community well-being and promote healthy outcomes.

scholarly journals Bacterial Isolates from Tracheal Aspirates and their Anti-microbial Susceptibility in Mechanically-Ventilated Children with Pneumonia Admitted to an Urban Critical Care Ward

2015 ◽  
Vol 2 (2) ◽  
pp. 60-64 ◽  
Author(s):  
KM Shahunja ◽  
Mohammed Abdus Salam ◽  
Tahmeed Ahmed ◽  
Pradip Kumar Bardhan ◽  
Shafiqul Alam Sarker ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Severe Pneumonia ◽  
Tracheal Aspirate ◽  
Diarrhoeal Disease ◽  
Multi Drug Resistance ◽  
Gram Negative Bacteria ◽  
Bacterial Isolates ◽  
Gram Negative ◽  
Mechanically Ventilated ◽  
Tracheal Aspirates

Background and Aims: Data on Bacterial isolates from tracheal aspirates in children with severe pneumonia requiring intubation and mechanical ventilation especially in developing countries are very limited. We examined the microbial spectrum of bacteria isolated from tracheal aspirate of those children. The antibiotic susceptibility profiles of those bacteria were also examined.Methods: We evaluated the data of all mechanically ventilated children aged 0-59 months admitted to Intensive Care Unit (ICU) of “Dhaka Hospital” of the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b) between August 2009 and July 2013 having their tracheal aspirate culture done. Data were extracted from electronic medical records of the Dhaka Hospital.Results: Among 836 admitted pneumonia children in the ICU, we identified 35 children who fulfilled the inclusion criteria. Among them 34 (97%) had positive bacterial growths: Klebseilla species in 14 (40%), Escherichia coli in 11 (31%), Acinetobacter in 8 (23%) and Streptococcus species in 8 (23%). Additionally, Enterococcus, Staphylococcus aureus, Pseudominas and Proteus species were identified in 6 (17%), 4 (11%), and 2 (6%) of the children respectively. The susceptibility of the gram-negatives, except Klebseilla, to ampicillin, cotrimoxazole, gentamycin, ciprofloxacin, azithromycin, and ceftriaxone ranged from 0- 54%, while that for ceftazidime and amikacin ranged from 12-80%. The sensitivity of Klebseilla to these antibiotics ranged from 0-100%.Conclusions: Our data suggests that gram-negative bacteria, Klebseilla followed by Escherichia coli, and Acenetobacter are the predominant bacteria associated with severe pneumonia in ventilated children. The increased number of infections caused by Gram-negative bacteria is being accompanied by rising rates of multi-drug resistance which underscores the importance of aggressive antimicrobial therapy in the management of such children.Bangladesh Crit Care J September 2014; 2 (2): 60-64

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