scholarly journals Ammonium and nitrate additions differentially affect soil microbial biomass of different communities and enzyme activities in slash pine plantation in subtropical China

2017 ◽  
Author(s):  
Chuang Zhang ◽  
Xin-Yu Zhang ◽  
Hong-Tao Zou ◽  
Liang Kou ◽  
Yang Yang ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Soil Ph ◽  
Enzyme Activities ◽  
Phospholipid Fatty Acid ◽  
Soil Microbial Communities ◽  
Inhibitory Effects ◽  
Specific Enzyme ◽  
Total N ◽  
Soil Microbial ◽  
Total Plfa

Abstract. The ratios of nitrate to ammonium in wet atmosphere nitrogen (N) deposition compounds were increasing recently. However, the individual effects of nitrate and ammonium deposition on soil microbial communities biomass and enzyme activities are still unclear. We conducted a four-year N addition field experiment to evaluate the responses of soil microbial communities biomass and enzyme activities to ammonium (NH4Cl) and nitrate (NaNO3) additions. Our results showed that (1) the inhibitory effects of ammonium additions on total mass of phospholipid fatty acid (PLFA) were stronger than those of nitrate additions. Both decreased total PLFA mass about 24 % and 11 %, respectively. The inhibitory effects of ammonium additions on gram positive bacteria (G+) and bacteria, fungi, actinomycetes (A), and arbuscular mycorrhizal fungi (AMF) PLFA mass ranged from 14 %–40 %. (2) Both ammonium and nitrate additions inhibited absolute activities of C, N, and P hydrolyses and oxidases, and nitrate additions had stronger inhibition effects on the acid phosphatase (AP) than ammonium additions. Both ammonium and nitrate additions decreased N-acquisition specific enzyme activities (enzyme activities normalized by total PLFA mass) about 21 % or 43 %, respectively. However, ammonium additions increased P-acquisition specific enzyme activities about 19 % comparing to control. (3) Redundancy analysis (RDA) showed that the measured C, N, and P hydrolyses and polyphenol oxidase (PPO) activities were positively correlated with soil pH and ammonium contents, but negatively with nitrate contents; the mass of PLFA biomarkers were positively correlated with soil pH, soil organic carbon (SOC), and total N contents, but negatively with ammonium contents. (4) The soil enzyme activities varied seasonally in the order of March > June > October. On the contrary, microbial PLFA mass was higher in October than in March and June. Our results concluded that inhibition of mass of PLFA biomarkers and enzyme activities might be contributed to acidification caused by ammonium addition. Soil absolute enzyme activities were inhibited indirectly by acidification and nitrification, but specific enzyme activities normalized by PLFA were directly affected by N additions. It was meaningful to separate the effects of ammonium and nitrate additions on soil microbial communities and enzyme activities.

scholarly journals Contrasting effects of ammonium and nitrate additions on the biomass of soil microbial communities and enzyme activities in subtropical China

2017 ◽  
Vol 14 (20) ◽  
pp. 4815-4827 ◽  
Author(s):  
Chuang Zhang ◽  
Xin-Yu Zhang ◽  
Hong-Tao Zou ◽  
Liang Kou ◽  
Yang Yang ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Soil Ph ◽  
Enzyme Activities ◽  
Mycorrhizal Fungi ◽  
Soil Microbial Communities ◽  
Arbuscular Mycorrhizal ◽  
Inhibitory Effects ◽  
Total N ◽  
Soil Microbial ◽  
The Individual

Abstract. The nitrate to ammonium ratios in nitrogen (N) compounds in wet atmospheric deposits have increased over the recent past, which is a cause for some concern as the individual effects of nitrate and ammonium deposition on the biomass of different soil microbial communities and enzyme activities are still poorly defined. We established a field experiment and applied ammonium (NH4Cl) and nitrate (NaNO3) at monthly intervals over a period of 4 years. We collected soil samples from the ammonium and nitrate treatments and control plots in three different seasons, namely spring, summer, and fall, to evaluate the how the biomass of different soil microbial communities and enzyme activities responded to the ammonium (NH4Cl) and nitrate (NaNO3) applications. Our results showed that the total contents of phospholipid fatty acids (PLFAs) decreased by 24 and 11 % in the ammonium and nitrate treatments, respectively. The inhibitory effects of ammonium on Gram-positive bacteria (G+) and bacteria, fungi, actinomycetes, and arbuscular mycorrhizal fungi (AMF) PLFA contents ranged from 14 to 40 % across the three seasons. We also observed that the absolute activities of C, N, and P hydrolyses and oxidases were inhibited by ammonium and nitrate, but that nitrate had stronger inhibitory effects on the activities of acid phosphatase (AP) than ammonium. The activities of N-acquisition specific enzymes (enzyme activities normalized by total PLFA contents) were about 21 and 43 % lower in the ammonium and nitrate treatments than in the control, respectively. However, the activities of P-acquisition specific enzymes were about 19 % higher in the ammonium treatment than in the control. Using redundancy analysis (RDA), we found that the measured C, N, and P hydrolysis and polyphenol oxidase (PPO) activities were positively correlated with the soil pH and ammonium contents, but were negatively correlated with the nitrate contents. The PLFA biomarker contents were positively correlated with soil pH, soil organic carbon (SOC), and total N contents, but were negatively correlated with the ammonium contents. The soil enzyme activities varied seasonally, and were highest in March and lowest in October. In contrast, the contents of the microbial PLFA biomarkers were higher in October than in March and June. Ammonium may inhibit the contents of PLFA biomarkers more strongly than nitrate because of acidification. This study has provided useful information about the effects of ammonium and nitrate on soil microbial communities and enzyme activities.

Alkaline soil pH affects bulk soil, rhizosphere and root endosphere microbiomes of plants growing in a Sandhills ecosystem

2021 ◽  
Vol 97 (4) ◽  
Author(s):  
Lucas Dantas Lopes ◽  
Jingjie Hao ◽  
Daniel P Schachtman
Keyword(s):  
Microbial Communities ◽  
Plant Species ◽  
Soil Ph ◽  
Soil Microbial Communities ◽  
Bulk Soil ◽  
Strong Impact ◽  
Alkaline Soil ◽  
Alkaline Soils ◽  
Soil Microbial ◽  
Soil Rhizosphere

ABSTRACT Soil pH is a major factor shaping bulk soil microbial communities. However, it is unclear whether the belowground microbial habitats shaped by plants (e.g. rhizosphere and root endosphere) are also affected by soil pH. We investigated this question by comparing the microbial communities associated with plants growing in neutral and strongly alkaline soils in the Sandhills, which is the largest sand dune complex in the northern hemisphere. Bulk soil, rhizosphere and root endosphere DNA were extracted from multiple plant species and analyzed using 16S rRNA amplicon sequencing. Results showed that rhizosphere, root endosphere and bulk soil microbiomes were different in the contrasting soil pH ranges. The strongest impact of plant species on the belowground microbiomes was in alkaline soils, suggesting a greater selective effect under alkali stress. Evaluation of soil chemical components showed that in addition to soil pH, cation exchange capacity also had a strong impact on shaping bulk soil microbial communities. This study extends our knowledge regarding the importance of pH to microbial ecology showing that root endosphere and rhizosphere microbial communities were also influenced by this soil component, and highlights the important role that plants play particularly in shaping the belowground microbiomes in alkaline soils.

scholarly journals Comparison of Drivers of Soil Microbial Communities Developed in Karst Ecosystems with Shallow and Deep Soil Depths

Agronomy ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 173
Author(s):  
Huiling Guan ◽  
Jiangwen Fan ◽  
Haiyan Zhang ◽  
Warwick Harris
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Soil Depth ◽  
Phospholipid Fatty Acid ◽  
Soil Microbial Communities ◽  
Deep Soil ◽  
Soil System ◽  
Soil Microbial ◽  
Total Soil ◽  
Karst Ecosystems

Soil erosion is prevalent in karst areas, but few studies have compared the differences in the drivers for soil microbial communities among karst ecosystems with different soil depths, and most studies have focused on the local scale. To fill this research gap, we investigated the upper 20 cm soil layers of 10 shallow–soil depth (shallow–SDC, total soil depth less than 100 cm) and 11 deep–soil depth communities (deep–SDC, total soil depth more than 100 cm), covering a broad range of vegetation types, soils, and climates. The microbial community characteristics of both the shallow–SDC and deep–SDC soils were tested by phospholipid fatty acid (PLFAs) analysis, and the key drivers of the microbial communities were illustrated by forward selection and variance partitioning analysis. Our findings demonstrated that more abundant soil nutrients supported higher fungal PLFA in shallow–SDC than in deep–SDC (p < 0.05). Furthermore, stronger correlation between the microbial community and the plant–soil system was found in shallow–SDC: the pure plant effect explained the 43.2% of variance in microbial biomass and 57.8% of the variance in the ratio of Gram–positive bacteria to Gram–negative bacteria (G+/G−), and the ratio of fungi to total bacteria (F/B); the pure soil effect accounted for 68.6% variance in the microbial diversity. The ratio of microbial PLFA cyclopropyl to precursors (Cy/Pr) and the ratio of saturated PLFA to monounsaturated PLFA (S/M) as indicators of microbial stress were controlled by pH, but high pH was not conducive to microorganisms in this area. Meanwhile, Cy/Pr in all communities was >0.1, indicating that microorganisms were under environmental stress. Therefore, the further ecological restoration of degraded karst communities is needed to improve their microbial communities.

scholarly journals Responses of soil microbial communities and enzyme activities to nitrogen and phosphorus additions in Chinese fir plantations of subtropical China

2015 ◽  
Vol 12 (13) ◽  
pp. 10359-10387 ◽  
Author(s):  
W. Y. Dong ◽  
X. Y. Zhang ◽  
X. Y. Liu ◽  
X. L. Fu ◽  
F. S. Chen ◽  
...  
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Enzyme Activities ◽  
Microbial Community Composition ◽  
Soil Microbial Communities ◽  
Chinese Fir ◽  
Subtropical China ◽  
Nitrogen And Phosphorus ◽  
Soil Microbial ◽  
Nutrient Additions

Abstract. Nitrogen (N) and phosphorus (P) additions to forest ecosystems are known to influence various above-ground properties, such as plant productivity and composition, and below-ground properties, such as soil nutrient cycling. However, our understanding of how soil microbial communities and their functions respond to nutrient additions in subtropical plantations is still not complete. In this study, we added N and P to Chinese fir plantations in subtropical China to examine how nutrient additions influenced soil microbial community composition and enzyme activities. The results showed that most soil microbial properties were responsive to N and/or P additions, but responses often varied depending on the nutrient added and the quantity added. For instance, there were more than 30 % greater increases in the activities of β-Glucosidase (βG) and N-acetyl-β-D-glucosaminidase (NAG) in the treatments that received nutrient additions compared to the control plot, whereas acid phosphatase (aP) activity was always higher (57 and 71 %, respectively) in the P treatment. N and P additions greatly enhanced the PLFA abundanceespecially in the N2P treatment, the bacterial PLFAs (bacPLFAs), fungal PLFAs (funPLFAs) and actinomycic PLFAs (actPLFAs) were about 2.5, 3 and 4 times higher, respectively, than in the CK. Soil enzyme activities were noticeably higher in November than in July, mainly due to seasonal differences in soil moisture content (SMC). βG or NAG activities were significantly and positively correlated with microbial PLFAs. There were also significant relationships between gram-positive (G+) bacteria and all three soil enzymes. These findings indicate that G+ bacteria is the most important microbial community in C, N, and P transformations in Chinese fir plantations, and that βG and NAG would be useful tools for assessing the biogeochemical transformation and metabolic activity of soil microbes. We recommend combined additions of N and P fertilizer to promote soil fertility and microbial activity in this kind of plantation.

Liming improves soil microbial growth, but trash blanket placement increases labile carbon and nitrogen availability in a sugarcane soil of subtropical Australia

Soil Research ◽  
2018 ◽  
Vol 56 (3) ◽  
pp. 235 ◽  
Author(s):  
X. Y. Liu ◽  
M. Rezaei Rashti ◽  
M. Esfandbod ◽  
B. Powell ◽  
C. R. Chen
Keyword(s):  
Soil Ph ◽  
Enzyme Activities ◽  
Nitrogen Availability ◽  
Microbial Community Composition ◽  
Cropping System ◽  
Hot Water ◽  
Microbial Biomass C ◽  
N Availability ◽  
Total N ◽  
Soil Microbial

Liming has been widely used to decrease soil acidity, but its effects on soil nitrogen (N) availability and microbial processes in sugarcane fields are largely unknown. Adjacent sugarcane soils at 26 months after liming (26ML), 14 months after liming (14ML) and with no lime amendment (CK) in Bundaberg, Australia, were selected to investigate the effect of liming on soil N bioavailability and microbial activity in a long-term subtropical sugarcane cropping system. Liming in both 14ML and 26ML treatments significantly increased soil pH (by 1.2–1.4 units) and exchangeable Ca2+ (>2-fold) compared with the CK treatment. The lower concentrations of hot water extractable organic carbon (C) and total N and ammonium-N in the 14ML, compared with the CK and 26ML treatments, can be attributed to the absence of trash blanket placement in the former. Enhanced microbial immobilisation due to improved soil pH by liming (14ML and 26ML treatments) led to increased soil microbial biomass C and N, particularly in the presence of a trash blanket (26 ML treatment), but decreased soil respiration and metabolic quotient indicated that acidic stress conditions were alleviated in the liming treatments. Soil pH was the main factor governing soil enzyme activities, with an overall decrease in all enzyme activities in response to liming. Overall, liming and trash blanket practices improved sugarcane soil fertility. Further study is warranted to investigate the shifts in soil microbial community composition and the diversity and abundance of N-associated functional genes in response to liming in sugarcane fields.

scholarly journals   Effects of tillage and residue management on soil microbial communities in North China

2012 ◽  
Vol 58 (No. 1) ◽  
pp. 28-33 ◽  
Author(s):  
J.J. Wang ◽  
X.Y. Li ◽  
A.N. Zhu ◽  
X.K. Zhang ◽  
H.W. Zhang ◽  
...  
Keyword(s):  
Microbial Communities ◽  
North China ◽  
Microbial Biomass Carbon ◽  
Soil Microbial Communities ◽  
Conventional Tillage ◽  
Residue Management ◽  
No Tillage ◽  
Biomass Carbon ◽  
Total N ◽  
Soil Microbial

The impacts of tillage system (conventional tillage and no-tillage) and residue management (0, 50, and 100%) on soil properties and soil microbial community structure were determined in the Fengqiu State Key Agro-Ecological Experimental Station, North China. The microbial community structure was investigated by phospholipid fatty acid (PLFA) profiles. The results showed that tillage had significant effects on soil properties and soil microbial communities. In no-tillage (NT), microbial biomass carbon (MBC), total N, microbial biomass carbon/soil organic carbon (MBC/SOC), total microbes, and arbuscular mycorrhiza fungi increased, while actinomycetes, G<sup>+</sup>/G<sup>&ndash;</sup> bacteria ratio and monounsaturated fatty acids/saturated fatty acids (MUFA/STFA) decreased, compared with those in conventional tillage (CT). Residue had a significant positive effect on C/N ratio and MUFA/STFA. Canonical correspondence analysis indicated that tillage explained 76.1%, and residue management explained 0.6% of the variations in soil microbial communities, respectively. Soil microbial communities were significantly correlated with MBC, total N, C/N ratio and MBC/SOC. Among the six treatments, NT with 100% residue application obviously improved soil microbiological properties, and could be a proper management practice in the Huang-Huai-Hai Plain of China. &nbsp;

scholarly journals Response of Soil Microbial Communities to Warming and Clipping in Alpine Meadows in Northern Tibet

2020 ◽  
Vol 12 (14) ◽  
pp. 5617
Author(s):  
Haorui Zhang ◽  
Shaowei Li ◽  
Guangyu Zhang ◽  
Gang Fu
Keyword(s):  
Microbial Communities ◽  
Community Composition ◽  
Soil Microbial Communities ◽  
Alpine Meadows ◽  
Soil Microbial ◽  
Alpine Steppe ◽  
Total Plfa ◽  
Kobresia Meadow ◽  
Low Altitude ◽  
Steppe Meadow

In order to explore responses of soil microbial communities among different alpine meadows under warming and clipping, soil microorganisms of three alpine meadow sites (low altitude: 4313 m, alpine steppe meadow, 30°30′ N, 91°04′ E; mid-altitude: 4513 m, alpine steppe meadow, 30°31′ N, 91°04′ E; and high altitude: 4693, alpine Kobresia meadow, 30°32′ N, 91°03′ E) were measured using the phospholipid fatty acid (PLFA) method. Both warming and clipping significantly reduced PLFA content and changed the community composition of soil microbial taxa, which belong to bacterial and fungal communities in the alpine Kobresia meadow. Warming significantly reduced the soil total PLFA content by 36.1% and the content of soil fungi by 37.0%; the clipping significantly reduced the soil total PLFA content by 57.4%, the content of soil fungi by 49.9%, and the content of soil bacteria by 60.5% in the alpine Kobresia meadow. Only clipping changed the total fungal community composition at a low altitude. Neither clipping nor warming changed the microbial community composition at a moderate altitude. Soil temperature, soil moisture, and pH were the main factors affecting soil microbial communities. Therefore, the effects of warming and clipping on soil microbial communities in alpine meadows were related to grassland types and soil environmental conditions.

scholarly journals Effect of Soil Layer and Plant–Soil Interaction on Soil Microbial Diversity and Function after Canopy Gap Disturbance

Forests ◽  
2018 ◽  
Vol 9 (11) ◽  
pp. 680 ◽  
Author(s):  
Xuan Yu ◽  
Lin Yang ◽  
Shixuan Fei ◽  
Zitong Ma ◽  
Ruqian Hao ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Enzyme Activities ◽  
Soil Layer ◽  
Soil Microbial Communities ◽  
Gap Size ◽  
Pine Plantation ◽  
Soil Microbial Diversity ◽  
Chinese Pine ◽  
Soil Microbial ◽  
Microbial Plfas

Gaps by thinning can have different microclimatic environments compared to surrounding areas, depending on the size of the gap. In addition, gaps can play important roles in biological dynamics, nutrient cycling, and seedling regeneration. The impacts of gap size on soil microbial communities and enzyme activities in different soil layers in Chinese pine plantations are not well understood. Here, we created gaps of 45 m2 (small, G1), 100 m2 (medium, G2), and 190 m2 (large, G3) by thinning unhealthy trees in an aged (i.e., 50 years old) monoculture Chinese pine plantation in 2010. Soil samples were collected in 2015. The total, bacterial, Gram-positive (G+), and Gram-negative (G−) phospholipid fatty acid (PLFA) profiles were highest in medium gaps in both the organic and mineral layers. These indicesdecreased sharply as gap size increased to 190 m2, and each of the detected enzyme activities demonstrated the same trend. Under all the gap size managements, abundances of microbial PLFAs and enzyme activities in the organic layers were higher than in the mineral layers. The soil layer was found to have a stronger influence on soil microbial communities than gap size. Redundancy analysis (RDA) based on the three systems with different gap sizes showed that undergrowth coverage, diversity, soil total nitrogen (TN), total organic carbon (TOC), and available phosphorus (AT) significantly affected soil microbial communities. Our findings highlighted that the effect of gap size on soil microenvironment is valuable information for assessing soil fertility. Medium gaps (i.e., 100 m2) have higher microbial PLFAs, enzyme activity, and soil nutrient availability. These medium gaps are considered favorable for soil microbial communities and fertility studied in a Chinese pine plantation managed on the Loess Plateau.

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