Biological Traits of Azotobacter Isolated from Marginal Soils and their Resistance to Tetracycline

We evaluated the productivity and profitability of four highly productive poplars including Populus deltoides × P. deltoides (DD ‘140’ and ‘356’), P. deltoides × P. maximowiczii (DM ‘230’), and P. trichocarpa × P. deltoides (TD ‘185’) under two densities (2500 and 5000 trees ha−1), and three fertilization treatments (0, 113, 225 kg nitrogen ha−1) at three sandy coastal sites varying in soil quality. Green stem biomass (GSB) was estimated from the sixth-year stem diameter. Leaf-rust (Melampsora castagne) and beetle damage (by Chrysomela scripta Fabricius), the leaf area index (LAI) and foliar nitrogen, were measured in year two. At all sites, DD and DM had higher survival (>93%) than TD (62–83%). DD produced greater GSB (92.5–219.1 Mg ha−1) than DM (54–60.2 Mg ha−1) and TD (16.5–48.9 Mg ha−1), and this was greater under the higher density (85.9–148.6 Mg ha−1 vs. 55.9–124.9 Mg ha−1). Fertilization significantly increased GSB on fertile soil but not marginal soils; a higher rate did not significantly enhance GSB. Leaf rust was higher for fertile soil (82%) than marginal soils (20–22%), and TD ‘185’ (51% vs. others 34%). C. scripta damage was higher for the higher density (+42%) than lower density, and TD ‘185’ (50% vs. others >38%). LAI was higher on fertile soil (1.85 m2 m−2) than marginal soils (1.35–1.64 m2 m−2), and under the lower density (1.67 m2 m−2 vs. 1.56 m2 m−2). The high GSB producer DD ‘356’ had the lowest LAI (1.39 m2 m−2 vs. 1.80 m2 m−2). Foliar nitrogen varied among genomic groups (DD ‘140’ 1.95%; TD ‘185’ 1.80%). Our plots were unprofitable at a 27 USD Mg−1 delivered price; the biggest profitability barriers were the high costs of higher density establishment and weed control. The best-case treatment combinations of DD (‘140’, ‘356’) would be cost-effective if the price increased by 50% (USD 37.54 Mg−1) or rotations were 12 years (fertile-soil) and longer (marginal soils). The requirement for cost-effectiveness of poplars includes stringent and site-specific weed control which are more important than fertilizer applications.

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An artificial neural network approach integrating plasma proteomics and genetic data identifies PLXNA4 as a new susceptibility locus for pulmonary embolism

Scientific Reports ◽

10.1038/s41598-021-93390-7 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Misbah Razzaq ◽

Maria Jesus Iglesias ◽

Manal Ibrahim-Kosta ◽

Louisa Goumidi ◽

Omar Soukarieh ◽

...

Keyword(s):

Pulmonary Embolism ◽

Genome Wide Association Study ◽

Susceptibility Gene ◽

Biological Traits ◽

Nucleotide Polymorphisms ◽

Ann Model ◽

Neural Network Approach ◽

A Genome ◽

Increased Risk ◽

Artificial Neural

AbstractVenous thromboembolism is the third common cardiovascular disease and is composed of two entities, deep vein thrombosis (DVT) and its potential fatal form, pulmonary embolism (PE). While PE is observed in ~ 40% of patients with documented DVT, there is limited biomarkers that can help identifying patients at high PE risk. To fill this need, we implemented a two hidden-layers artificial neural networks (ANN) on 376 antibodies and 19 biological traits measured in the plasma of 1388 DVT patients, with or without PE, of the MARTHA study. We used the LIME algorithm to obtain a linear approximate of the resulting ANN prediction model. As MARTHA patients were typed for genotyping DNA arrays, a genome wide association study (GWAS) was conducted on the LIME estimate. Detected single nucleotide polymorphisms (SNPs) were tested for association with PE risk in MARTHA. Main findings were replicated in the EOVT study composed of 143 PE patients and 196 DVT only patients. The derived ANN model for PE achieved an accuracy of 0.89 and 0.79 in our training and testing sets, respectively. A GWAS on the LIME approximate identified a strong statistical association peak (rs1424597: p = 5.3 × 10–7) at the PLXNA4 locus. Homozygote carriers for the rs1424597-A allele were then more frequently observed in PE than in DVT patients from the MARTHA (2% vs. 0.4%, p = 0.005) and the EOVT (3% vs. 0%, p = 0.013) studies. In a sample of 112 COVID-19 patients known to have endotheliopathy leading to acute lung injury and an increased risk of PE, decreased PLXNA4 levels were associated (p = 0.025) with worsened respiratory function. Using an original integrated proteomics and genetics strategy, we identified PLXNA4 as a new susceptibility gene for PE whose exact role now needs to be further elucidated.

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Is High Whitefly Abundance on Cassava in Sub-Saharan Africa Driven by Biological Traits of a Specific, Cryptic Bemisia tabaci Species?

Insects ◽

10.3390/insects12030260 ◽

2021 ◽

Vol 12 (3) ◽

pp. 260

Author(s):

Habibu Mugerwa ◽

Peter Sseruwagi ◽

John Colvin ◽

Susan Seal

Keyword(s):

Food Security ◽

Bemisia Tabaci ◽

Development Time ◽

Adult Emergence ◽

Sub Saharan Africa ◽

Biological Traits ◽

Population Development ◽

Species Classification ◽

First Instar ◽

Sub Saharan

In East Africa, the prevalent Bemisia tabaci whiteflies on the food security crop cassava are classified as sub-Saharan Africa (SSA) species. Economically damaging cassava whitefly populations were associated with the SSA2 species in the 1990s, but more recently, it has been to SSA1 species. To investigate whether biological traits (number of first instar nymphs, emerged adults, proportion of females in progeny and development time) of the cassava whitefly species are significant drivers of the observed field abundance, our study determined the development of SSA1 sub-group (SG) 1 (5 populations), SG2 (5 populations), SG3 (1 population) and SSA2 (1 population) on cassava and eggplant under laboratory conditions. SSA1-(SG1-SG2) and SSA2 populations’ development traits were similar. Regardless of the host plant, SSA1-SG2 populations had the highest number of first instar nymphs (60.6 ± 3.4) and emerged adults (50.9 ± 3.6), followed by SSA1-SG1 (55.5 ± 3.2 and 44.6 ± 3.3), SSA2 (45.8 ± 5.7 and 32.6 ± 5.1) and the lowest were SSA1-SG3 (34.2 ± 6.1 and 32.0 ± 7.1) populations. SSA1-SG3 population had the shortest egg–adult emergence development time (26.7 days), followed by SSA1-SG1 (29.1 days), SSA1-SG2 (29.6 days) and SSA2 (32.2 days). Regardless of the whitefly population, development time was significantly shorter on eggplant (25.1 ± 0.9 days) than cassava (34.6 ± 1.0 days). These results support that SSA1-(SG1-SG2) and SSA2 B. tabaci can become highly abundant on cassava, with their species classification alone not correlating with observed abundance and prevalence.

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Terpenoid Biosynthesis Dominates among Secondary Metabolite Clusters in Mucoromycotina Genomes

Journal of Fungi ◽

10.3390/jof7040285 ◽

2021 ◽

Vol 7 (4) ◽

pp. 285

Author(s):

Grzegorz Koczyk ◽

Julia Pawłowska ◽

Anna Muszewska

Keyword(s):

Secondary Metabolites ◽

Growth Promotion ◽

Iron Chelation ◽

Biological Traits ◽

Terpenoid Biosynthesis ◽

Gene Model ◽

Model Quality ◽

The Core ◽

Domain Composition ◽

Peptide Synthetase

Early-diverging fungi harbour unprecedented diversity in terms of living forms, biological traits and genome architecture. Before the sequencing era, non-Dikarya fungi were considered unable to produce secondary metabolites (SM); however, this perspective is changing. The main classes of secondary metabolites in fungi include polyketides, nonribosomal peptides, terpenoids and siderophores that serve different biological roles, including iron chelation and plant growth promotion. The same classes of SM are reported for representatives of early-diverging fungal lineages. Encouraged by the advancement in the field, we carried out a systematic survey of SM in Mucoromycotina and corroborated the presence of various SM clusters (SMCs) within the phylum. Among the core findings, considerable representation of terpene and nonribosomal peptide synthetase (NRPS)-like candidate SMCs was found. Terpene clusters with diverse domain composition and potentially highly variable products dominated the landscape of candidate SMCs. A uniform low-copy distribution of siderophore clusters was observed among most assemblies. Mortierellomycotina are highlighted as the most potent SMC producers among the Mucoromycota and as a source of novel peptide products. SMC identification is dependent on gene model quality and can be successfully performed on a batch scale with genomes of different quality and completeness.

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Biological traits of the predatory mirid Macrolophus praeclarus, a candidate biocontrol agent for the Neotropical region

Bulletin of Entomological Research ◽

10.1017/s0007485321000067 ◽

2021 ◽

pp. 1-9

Author(s):

Meritxell Pérez-Hedo ◽

Carolina Gallego ◽

Amy Roda ◽

Barry Kostyk ◽

Mónica Triana ◽

...

Keyword(s):

Developmental Rate ◽

Predation Rate ◽

Developmental Time ◽

Control Treatment ◽

Thermal Constant ◽

Biological Traits ◽

Pest Species ◽

Tomato Plants ◽

Defensive Responses ◽

Predatory Mirid

Abstract The predatory mirid Macrolophus praeclarus is widely distributed throughout the Americas, and is reported to prey upon several horticultural pest species. However, little is known about its biology, thermal requirements, crop odour preferences, phytophagy, and capability to induce defensive responses in plants. When five temperatures studied (20, 25, 30, 33 and 35°C) were tested and Ephestia kuehniella was used as prey, the developmental time from egg to adult on tomato, was longest at 20°C (56.3 d) and shortest at 33°C (22.7 d). The ability of nymphs to develop to adults decreased as the temperature increased, with the highest number of nymphs reaching the adult stage at 20°C (78.0%) and lowest at 35°C (0%). The lower and upper developmental thresholds were estimated at 11.2° and 35.3°C, respectively. The maximum developmental rate occurred at 31.7°C and the thermal constant was 454.0 ± 8.1 degree days. The highest predation rate of E. kuehniella eggs was obtained at 30°C. In Y-tube olfactory choice tests, M. praeclarus selected tomato, sweet pepper and eggplant odours more frequently than no plant control treatment. Macrolophus praeclarus feeding did not damage tomato plants compared to another zoophytophagous mirid, Nesidiocoris tenuis, which caused necrotic rings. The phytophagy of M. praeclarus induced defensive responses in tomato plants through the upregulation of the jasmonic acid metabolic pathway. The implications of the findings for using M. praeclarus in tomato biological control programmes in the Americas are discussed.

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Soft bottom macrofauna of an All Taxa Biodiversity Site: Hornsund (77○N, Svalbard)

Polish Polar Research ◽

10.2478/v10183-010-0008-y ◽

2010 ◽

Vol 31 (4) ◽

pp. 309-326 ◽

Cited By ~ 9

Author(s):

Monika Kędra ◽

Sławomira Gromisz ◽

Radomir Jaskuła ◽

Joanna Legeżyńska ◽

Barbara Maciejewska ◽

...

Keyword(s):

Bottom Fauna ◽

Sampling Effort ◽

Biological Traits ◽

Depth Range ◽

Concerted Action ◽

Soft Bottom ◽

Species List ◽

Biodiversity Inventory ◽

Arctic Fjord ◽

Large Material

Soft bottom macrofauna of an All Taxa Biodiversity Site: Hornsund (77○N, Svalbard) Hornsund, an Arctic fjord in the west coast of Spitsbergen (Svalbard), was selected as All Taxa Biodiversity Inventory (ATBI) site under EU 5th Framework Concerted Action BIOMARE (2000-2002), especially due to its pristine, undisturbed natural character. On the base of large material (89 stations located throughout the fjord and 129 Van Veen grab samples) collected during cruises of RV Oceania in July in 2002, 2003, 2005 and 2007 and literature search a comprehensive list of species recorded within Hornsund area, on the soft bottom with depth range of 30-250 m is provided. Over 220 species were identified including 93 species of Polychaeta, 62 species of Mollusca and 58 species of Crustacea. Species list is supported by information on the zoogeographical status, body length and biological traits of dominant species. Need for further research on Hornsund soft bottom fauna with more sampling effort is highlighted.

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