scholarly journals Effect of errors in pedigree on the accuracy of estimated breeding value for carcass traits in Korean Hanwoo cattle

2020 ◽  
Vol 33 (7) ◽  
pp. 1057-1067 ◽  
Author(s):  
Chiemela Peter Nwogwugwu ◽  
Yeongkuk Kim ◽  
Yun Ji Chung ◽  
Sung Bong Jang ◽  
Seung Hee Roh ◽  
...  
Keyword(s):  
Genetic Gain ◽  
Carcass Traits ◽  
Error Rates ◽  
Breeding Value ◽  
Marbling Score ◽  
Muscle Area ◽  
Data Set ◽  
Eye Muscle ◽  
Estimated Breeding Value ◽  
Hanwoo Cattle

Objective: This study evaluated the effect of pedigree errors (PEs) on the accuracy of estimated breeding value (EBV) and genetic gain for carcass traits in Korean Hanwoo cattle.Methods: The raw data set was based on the pedigree records of Korean Hanwoo cattle. The animals’ information was obtained using Hanwoo registration records from Korean animal improvement association database. The record comprised of 46,704 animals, where the number of the sires used was 1,298 and the dams were 38,366 animals. The traits considered were carcass weight (CWT), eye muscle area (EMA), back fat thickness (BFT), and marbling score (MS). Errors were introduced in the pedigree dataset through randomly assigning sires to all progenies. The error rates substituted were 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, and 80%, respectively. A simulation was performed to produce a population of 1,650 animals from the pedigree data. A restricted maximum likelihood based animal model was applied to estimate the EBV, accuracy of the EBV, expected genetic gain, variance components, and heritability (h2) estimates for carcass traits. Correlation of the simulated data under PEs was also estimated using Pearson’s method.Results: The results showed that the carcass traits per slaughter year were not consistent. The average CWT, EMA, BFT, and MS were 342.60 kg, 78.76 cm<sup>2, 8.63 mm, and 3.31, respectively. When errors were introduced in the pedigree, the accuracy of EBV, genetic gain and h2 of carcass traits was reduced in this study. In addition, the correlation of the simulation was slightly affected under PEs.Conclusion: This study reveals the effect of PEs on the accuracy of EBV and genetic parameters for carcass traits, which provides valuable information for further study in Korean Hanwoo cattle.

scholarly journals Estimation of Genetic Correlations of Primal Cut Yields with Carcass Traits in Hanwoo Beef Cattle

Animals ◽  
2021 ◽  
Vol 11 (11) ◽  
pp. 3102
Author(s):  
Masoumeh Naserkheil ◽  
Deukmin Lee ◽  
Kihoon Chung ◽  
Mi Na Park ◽  
Hossein Mehrban
Keyword(s):  
Consumer Preferences ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
Market Price ◽  
Marbling Score ◽  
Beef Industry ◽  
Genetic Progress ◽  
Muscle Area ◽  
Eye Muscle ◽  
Hanwoo Cattle

This study was carried out to estimate the variance components, heritability, and genetic correlations between the carcass traits and primal cut yields in Hanwoo cattle. Carcass traits comprising 5622 records included back fat thickness (BFT), carcass weight (CW), eye muscle area (EMA), and marbling score (MS). The 10 primal cut yields from 3467 Hanwoo steers included the tenderloin (TLN), sirloin (SLN), striploin (STLN), chuck (CHK), brisket (BSK), top round (TRD), bottom round (BRD), rib (RB), shank (SK), and flank (FK). In addition, three composite traits were formed by combining primal cut yields as novel traits according to consumer preferences and market price: high-value cuts (HVC), medium-value cuts (MVC), and low-value cuts (LVC). Heritability estimates for the interest of traits were moderate to high, ranging from 0.21 ± 0.04 for CHK to 0.59 ± 0.05 for MS. Except genetic correlations between RB and other primal cut traits, favorable and moderate to high correlations were observed among the yields of primal cut that ranged from 0.38 ± 0.14 (CHK and FK) to 0.93 ± 0.01 (TRD and BRD). Moreover, the estimated genetic correlations of CW and EMA with primal cut yields and three composite traits were positive and moderate to strong, except for BFT, which was negative. These results indicate that genetic progress can be achieved for all traits, and selection to increase the yields of primal cuts can lead to considerable profitability in the Hanwoo beef industry.

scholarly journals Estimation of Genetic Parameters by Single-Trait and Multi-Trait Models for Carcass Traits in Hanwoo Cattle

Animals ◽  
2019 ◽  
Vol 9 (12) ◽  
pp. 1061
Author(s):  
Swati Srivastava ◽  
Bryan Irvine Lopez ◽  
Sara de las Heras-Saldana ◽  
Jong-Eun Park ◽  
Dong-Hyun Shin ◽  
...  
Keyword(s):  
Genetic Parameters ◽  
Carcass Traits ◽  
Meat Production ◽  
Nucleotide Polymorphisms ◽  
Genomic Information ◽  
Marbling Score ◽  
Muscle Area ◽  
Eye Muscle ◽  
Hanwoo Cattle ◽  
Genomic Model

Hanwoo breed is preferred in South Korea because of the high standards in marbling and the palatability of its meat. Numerous studies have been conducted and are ongoing to increase the meat production and quality in this beef population. The aim of this study was to estimate and compare genetic parameters for carcass traits using BLUPF90 software. Four models were constructed, single trait pedigree model (STPM), single-trait genomic model (STGM), multi-trait pedigree model (MTPM), and multi-trait genomic model (MTGM), using the pedigree, phenotype, and genomic information of 7991 Hanwoo cattle. Four carcass traits were evaluated: Back fat thickness (BFT), carcass weight (CWT), eye muscle area (EMA), and marbling score (MS). Heritability estimates of 0.40 and 0.41 for BFT, 0.33 and 0.34 for CWT, 0.36 and 0.37 for EMA, and 0.35 and 0.38 for MS were obtained for the single-trait pedigree model and the multi-trait pedigree model, respectively, in Hanwoo. Further, the genomic model showed more improved results compared to the pedigree model, with heritability of 0.39 (CWT), 0.39 (EMA), and 0.46 (MS), except for 0.39 (BFT), which may be due to random events. Utilization of genomic information in the form of single nucleotide polymorphisms (SNPs) has allowed more capturing of the variance from the traits improving the variance components.

Genetic relationships between live animal scan traits and carcass traits of Australian Angus bulls and heifers

2013 ◽  
Vol 53 (10) ◽  
pp. 1075
Author(s):  
Vinzent Börner ◽  
David J. Johnston ◽  
Hans-Ulrich Graser
Keyword(s):  
Genetic Gain ◽  
Genetic Parameters ◽  
Genetic Relationships ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
Age Effect ◽  
Breeding Value ◽  
Muscle Area ◽  
Live Animal ◽  
Eye Muscle

Genetic parameters of four ultrasound live-scan traits and five carcass traits of Australian Angus cattle were examined with regard to sex and age of the scanned individuals. Live-scans were subdivided according to whether the observation was obtained from a bull or a heifer. In addition, two age subset (‘young’ and ‘old’) within sex were formed by k-means clustering around two centres within sex according to the age at scanning. REML estimates for heritabilities, genetic, residual and phenotypic correlations for each trait and trait combination were derived from a series of uni-, bi- and tri-variate analysis. Statistically significant age effects could be found for heritablities of scan intra-muscular fat content in heifers and scan fat depth at P8 site and scan rib fat depth in bulls, and for genetic correlations between the scan traits fat depth at P8 site, rib fat depth and eye muscle area. However, differences in heritablities between age sets within sex did not exceed 0.05, and genetic correlations between scan traits of ‘young’ and ‘old’ animals were at least 0.9. Differences between genetic correlations of abattoir carcass traits and ‘young’ and ‘old’ live-scan traits, respectively, were not significant due to high standard errors but up to 0.44. The larger of these differences were found for combinations of scan-traits and non-target carcass traits and not for combination of scan-traits and their actual carcass target traits. Thus, although some results suggest an age effect on the genetic parameters of scan traits, the extent of this effect is of limited impact on breeding value accuracy and genetic gain of scan traits. Furthermore, a possible age effect on correlations to economically important carcass traits need to be underpinned by more carcass traits observations in order to get unambiguous results allowing to draw consequences of scanning younger individuals for accuracy of breeding values and genetic gain in carcass traits.

scholarly journals The effectiveness of genomic selection for milk production traits of Holstein dairy cattle

2020 ◽  
Vol 33 (3) ◽  
pp. 382-389 ◽  
Author(s):  
Yun-Mi Lee ◽  
Chang-Gwon Dang ◽  
Mohammad Z. Alam ◽  
You-Sam Kim ◽  
Kwang-Hyeon Cho ◽  
...  
Keyword(s):  
Genomic Selection ◽  
Milk Production ◽  
Genetic Gain ◽  
Milk Fat ◽  
Breeding Value ◽  
Production Traits ◽  
Milk Production Traits ◽  
Data Set ◽  
Selection For ◽  
Estimated Breeding Value

Objective: This study was conducted to test the efficiency of genomic selection for milk production traits in a Korean Holstein cattle population.Methods: A total of 506,481 milk production records from 293,855 animals (2,090 heads with single nucleotide polymorphism information) were used to estimate breeding value by single step best linear unbiased prediction.Results: The heritability estimates for milk, fat, and protein yields in the first parity were 0.28, 0.26, and 0.23, respectively. As the parity increased, the heritability decreased for all milk production traits. The estimated generation intervals of sire for the production of bulls (L<sub>SB</sub>) and that for the production of cows (L<sub>SC</sub>) were 7.9 and 8.1 years, respectively, and the estimated generation intervals of dams for the production of bulls (L<sub>DB</sub>) and cows (L<sub>DC</sub>) were 4.9 and 4.2 years, respectively. In the overall data set, the reliability of genomic estimated breeding value (GEBV) increased by 9% on average over that of estimated breeding value (EBV), and increased by 7% in cows with test records, about 4% in bulls with progeny records, and 13% in heifers without test records. The difference in the reliability between GEBV and EBV was especially significant for the data from young bulls, i.e. 17% on average for milk (39% vs 22%), fat (39% vs 22%), and protein (37% vs 22%) yields, respectively. When selected for the milk yield using GEBV, the genetic gain increased about 7.1% over the gain with the EBV in the cows with test records, and by 2.9% in bulls with progeny records, while the genetic gain increased by about 24.2% in heifers without test records and by 35% in young bulls without progeny records.Conclusion: More genetic gains can be expected through the use of GEBV than EBV, and genomic selection was more effective in the selection of young bulls and heifers without test records.

scholarly journals Genetic Analysis of Major Carcass Traits of Korean Hanwoo Males Raised for Thirty Months

Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1792
Author(s):  
Mahboob Alam ◽  
Soo Hyun Lee ◽  
Do Hyun Lee ◽  
Chungil Cho ◽  
Mi Na Park
Keyword(s):  
Genetic Parameters ◽  
Carcass Traits ◽  
Production Cycle ◽  
Marbling Score ◽  
Multiple Trait ◽  
Muscle Area ◽  
Eye Muscle ◽  
Future Studies ◽  
Genetic Potential ◽  
First Time

Understanding animals’ genetic potential for carcass traits is the key to genetic improvements in any beef cattle. In this study, we investigated the genetic merits of carcass traits using Hanwoo males raised in a 30-month production system (PROD30). We achieved this using a dataset comprising 6092 Hanwoo males born between 2005 and 2017 and measures of four carcass traits (carcass weight, CWT; eye muscle area, EMA; backfat thickness, BFT; and marbling score, MS). Genetic parameters were estimated using a multiple-trait animal model through the AIREMLF90 program. According to the multiple-trait model, the h2 of CWT, EMA, BFT, and MS were 0.35 ± 0.04, 0.43 ± 0.05, 0.48 ± 0.05, and 0.56 ± 0.05, respectively. The strongest genetic correlation (rg) was obtained between CWT and EMA (0.49 ± 0.07), whereas it was negligible between CWT and BFT. EMA and MS were also moderately correlated, whereas there was a relatively low negative correlation between EMA and BFT (−0.26 ± 0.08). Our study revealed a consistent indirect genetic improvement in animals from 2005 onwards. Although Hanwoo improvement has mainly focused on males under a 24-month production cycle, we observed PROD30 males to have somewhat similar genetic potential. Our results provide useful insights into the genetic merits of PROD30 males for the first time, which may facilitate future studies on them and their integration into the Hanwoo National Evaluation for genomic selection.

scholarly journals Estimation of Genetic Parameters and Correlation between Yearling Ultrasound Measurements and Carcass Traits in Hanwoo Cattle

Animals ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 1425
Author(s):  
Masoumeh Naserkheil ◽  
Deuk-Hwan Lee ◽  
Hong-Sik Kong ◽  
Jiyeon Seong ◽  
Hossein Mehrban
Keyword(s):  
Genetic Correlation ◽  
Genetic Parameters ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
Backfat Thickness ◽  
Marbling Score ◽  
Muscle Area ◽  
Eye Muscle ◽  
Ultrasound Measurements ◽  
Heritability Estimates

Genetic parameters have a significant role in designing a breeding program and are required to evaluate economically important traits. The objective of this study was to estimate heritability and genetic correlation between yearling ultrasound measurements, such as backfat thickness (UBFT), eye muscle area (UEMA), intramuscular fat content (UIMF), and carcass traits, such as backfat thickness (BFT), carcass weight (CW), eye muscle area (EMA), marbling score (MS) at approximately 24 months of age, as well as yearling weight (YW) in Hanwoo bulls (15,796) and steers (5682). The (co) variance components were estimated using a multi-trait animal model. Moderate to high heritability estimates were obtained and were 0.42, 0.50, 0.56, and 0.59 for CW, EMA, BFT, and MS, respectively. Heritability estimates for yearling measurements of YW, UEMA, UBFT, and UIMF were 0.31, 0.32, 0.30, and 0.19, respectively. Favorable and strong genetic correlations were observed between UIMF and MS (0.78), UBFT and BFT (0.63), and UEMA and EMA (0.65). Moreover, the estimated genetic correlation between YW and CW was high (0.84) and relatively moderate between YW and EMA (0.43). These results suggest that genetic improvement can be achieved for carcass traits when using yearling ultrasound measurements as selection criteria in ongoing Hanwoo breeding programs.

scholarly journals Weighted Genomic Best Linear Unbiased Prediction for Carcass Traits in Hanwoo Cattle

Genes ◽  
2019 ◽  
Vol 10 (12) ◽  
pp. 1019 ◽  
Author(s):  
Bryan Irvine Lopez ◽  
Seung-Hwan Lee ◽  
Jong-Eun Park ◽  
Dong-Hyun Shin ◽  
Jae-Don Oh ◽  
...  
Keyword(s):  
Genomic Prediction ◽  
Carcass Traits ◽  
Best Linear Unbiased Prediction ◽  
Birth Date ◽  
Muscle Area ◽  
Eye Muscle ◽  
Linear Unbiased Prediction ◽  
Best Linear Unbiased ◽  
Hanwoo Cattle ◽  
Unbiased Prediction

The genomic best linear unbiased prediction (GBLUP) method has been widely used in routine genomic evaluation as it assumes a common variance for all single nucleotide polymorphism (SNP). However, this is unlikely in the case of traits influenced by major SNP. Hence, the present study aimed to improve the accuracy of GBLUP by using the weighted GBLUP (WGBLUP), which gives more weight to important markers for various carcass traits of Hanwoo cattle, such as backfat thickness (BFT), carcass weight (CWT), eye muscle area (EMA), and marbling score (MS). Linear and different nonlinearA SNP weighting procedures under WGBLUP were evaluated and compared with unweighted GBLUP and traditional pedigree-based methods (PBLUP). WGBLUP methods were assessed over ten iterations. Phenotypic data from 10,215 animals from different commercial herds that were slaughtered at approximately 30-month-old of age were used. All these animals were genotyped using Illumina Bovine 50k SNP chip and were divided into a training and a validation population by birth date on 1 November 2015. Genomic prediction accuracies obtained in the nonlinearA weighting methods were higher than those of the linear weighting for all traits. Moreover, unlike with linear methods, no sudden drops in the accuracy were noted after the peak was reached in nonlinearA methods. The average accuracies using PBLUP were 0.37, 0.49, 0.40, and 0.37, and 0.62, 0.74, 0.67, and 0.65 using GBLUP for BFT, CWT, EMA, and MS, respectively. Moreover, these accuracies of genomic prediction were further increased to 4.84% and 2.70% for BFT and CWT, respectively by using the nonlinearA method under the WGBLUP model. For EMA and MS, WGBLUP was as accurate as GBLUP. Our results indicate that the WGBLUP using a nonlinearA weighting method provides improved predictions for CWT and BFT, suggesting that the ability of WGBLUP over the other models by weighting selected SNPs appears to be trait-dependent.

scholarly journals THI Modulation of Genetic and Non-genetic Variance Components for Carcass Traits in Hanwoo Cattle

2020 ◽  
Vol 11 ◽  
Author(s):  
Yoonji Chung ◽  
Seung Hwan Lee ◽  
Hak-Kyo Lee ◽  
Dajeong Lim ◽  
Julius van der Werf ◽  
...  
Keyword(s):  
Beef Cattle ◽  
Carcass Traits ◽  
Reaction Norm ◽  
Genetic Effects ◽  
Additive Models ◽  
Residual Effects ◽  
Environment Interaction ◽  
Marbling Score ◽  
Muscle Area ◽  
Eye Muscle

The phenotype of carcass traits in beef cattle are affected by random genetic and non-genetic effects, which both can be modulated by an environmental variable such as Temperature-Humidity Index (THI), a key environmental factor in cattle production. In this study, a multivariate reaction norm model (MRNM) was used to assess if the random genetic and non-genetic (i.e., residual) effects of carcass weight (CW), back fat thickness (BFT), eye muscle area (EMA), and marbling score (MS) were modulated by THI, using 9,318 Hanwoo steers (N = 8,964) and cows (N = 354) that were genotyped on the Illumina Bovine SNP50 BeadChip (50K). THI was measured based on the period of 15–45 days before slaughter. Both the correlation and the interaction between THI and random genetic and non-genetic effects were accounted for in the model. In the analyses, it was shown that the genetic effects of EMA and the non-genetic effects of CW and MS were significantly modulated by THI. No significant THI modulation of such effects was found for BFT. These results highlight the relevance of THI changes for the genetic and non-genetic variation of CW, EMA, and MS in Hanwoo beef cattle. Importantly, heritability estimates for CW, EMA, and MS from additive models without considering THI interactions were underestimated. Moreover, the significance of interaction can be biased if not properly accounting for the correlation between THI and genetic and non-genetic effects. Thus, we argue that the estimation of genetic parameters should be based on appropriate models to avoid any potential bias of estimates. Our finding should serve as a basis for future studies aiming at revealing genotype by environment interaction in estimation and genomic prediction of breeding values.

scholarly journals Estimation of environmental effects and genetic parameters of carcass traits on Chikso (Korean brindle cattle)

2020 ◽  
Vol 33 (4) ◽  
pp. 525-530 ◽  
Author(s):  
Byoungho Park ◽  
Tae Jeong Choi ◽  
Mi Na Park ◽  
Sang-Hyon Oh
Keyword(s):  
Linear Model ◽  
Environmental Effects ◽  
Genetic Parameters ◽  
Coat Color ◽  
Carcass Traits ◽  
National Level ◽  
Pedigree Information ◽  
Small Scale ◽  
Muscle Area ◽  
Eye Muscle

Objective: The purpose of this study was i) to identify the characteristics of carcass traits in Chikso by gender, region, age at slaughter, and coat color using the carcass data collected from the nationwide pedigree information and coat color investigation, and ii) to estimate genetic parameters for breed improvement.Methods: A linear model was used to analyze the environmental effects on the carcass traits and to estimate genetic parameters. Analysis of variance was performed using TYPE III sum of squares for the unbalanced data provided by the general linear model procedure. Variance components for genetic parameters was estimated using REMLF90 of the BLUPF90 family programs.Results: Phenotypic performance of carcass weight (CW), eye muscle area (EMA), and backfat thickness (BF) in Chikso were lower than those of Hanwoo. This is a natural outcome because Hanwoo have undergone significant efforts for improvement at the national level, a phenomenon not observed in Chikso. Another factor influencing the above outcome was the smaller population size of Chikso compared to that of Hanwoo’s. The heritabilities of CW, EMA, BF, and marbling score in Chikso were estimated as 0.50, 0.37, 0.35, and 0.53, respectively, which were was higher than those of Hanwoo.Conclusion: Based on the genetic parameters that were estimated in this study, it is expected that the carcass traits will improve when the livestock research institutes at each province conduct small-scale performance tests and the semen is provided to farmers after selecting proven bulls using the state-of-art selection technique such as genomic selection.

scholarly journals Effect of boars own performance on progeny fattening and carcass traits in two different environments

2004 ◽  
Vol 20 (3-4) ◽  
pp. 55-63 ◽  
Author(s):  
I. Bahelka ◽  
P. Fľak ◽  
Anna Lukácová
Keyword(s):  
Performance Test ◽  
Average Daily Gain ◽  
Carcass Traits ◽  
Live Weight ◽  
Feed Consumption ◽  
Muscle Area ◽  
Eye Muscle ◽  
Carcass Parameters ◽  
Performance Traits ◽  
Progeny Performance

The effect of own performance traits of meat breed boars on fattening and carcass parameters of progeny in two different test stations (Bucany and Nitra) was evaluated. Own performance traits of boars were average daily gain (ADG) from birth to 100 kg live weight, backfat thickness (BF) and lean meat content (LMC) in field conditions. Progeny of boars was housed in pairs (gilt and barrow) and fed standardized feed mixture semi ad libitum. Progeny test lasted from 30 to 100 kg live weight. There were evaluated following parameters: ADG and feed consumption/kg gain (FC) at test from 30 to 100 kg live weight, slaughter weight (SW), proportion of meaty cuts (PMC) proportion of ham (PHAM), eye muscle area (EMA), and BF. At Bucany and Nitra was found the effect of genotype of boars on progeny BF and/or FC respectively. Better tested boars from own performance test individually as well as a group achieved in progeny better fattening and carcass traits than worse tested boars at Bucany (+33 g ADG, -0.21 cm BF, +2.34 % PMC). Progeny performance from better evaluated boars at Nitra did not exceed the progeny performance from worse tested boars. There was found significant effect of dams on progeny performance.

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