scholarly journals Qualidade microbiológica da água da área de preservação ambiental: Fazenda Guajuviras – Canoas (RS)

2019 ◽  
Vol 11 (2) ◽  
pp. 13-21
Author(s):  
Priscila Ribeiro Jankoski ◽  
Mateus De Oliveira Negreiros ◽  
Anelise Beneduzi da Silveira ◽  
Francisco Fernando de Castilho Koller

As áreas úmidas compreendem vários ecossistemas, dentre eles, os banhados, que são locais estratégicos para conservação devido à sua alta diversidade biológica e produtividade resultante das relações estabelecidas entre a água, solo, vegetação e fauna. A Área de Proteção Ambiental (APA) Fazenda Guajuviras está localizada no município de Canoas (RS) e compreende cerca de 560ha. O objetivo desse estudo foi analisar os níveis de contaminação por bactérias heterotróficas e do grupo coliforme, traçar o perfil bioquímico e identificar alguns isolados bacterianos presentes em dois banhados da APA Guajuviras. Para tanto, as coletas foram realizadas em março de 2015, sendo que cada banhado foi dividido em quatro quadrantes, de onde foram coletadas amostras de 250mL de água. O banhado 2 foi o que apresentou os maiores níveis tanto para coliformes totais como para termotolerantes. Na quantificação das bactérias heterotróficas, os maiores níveis encontrados foram no quadrante norte do banhado 1 e 2. Foram isoladas oito linhagens bacterianas destes banhados. Das linhagens bacterianas obtidas destes banhados, foi possível a identificação, a partir do sequenciamento do gene 16S rRNA, de oito isolados de dois gêneros: Pseudomonas sp. e Serratia sp., e de mais três espécies: Bacillus subtilis, Lactococcus garvieae e Pseudomonas fluorescens.

2012 ◽  
Vol 554-556 ◽  
pp. 1498-1506
Author(s):  
Wei Qing Lan ◽  
Jing Xie

In this study, the main microbe dynamic changes of cutlassfish (Trichiurus haumela) treated with composite natural preservatives under the cold storage (4±1) °C were studied by the methods of culture-dependent and denaturing gradient gel electrophoresis (DGGE) fingerprinting analysis based on the sequence of 16S rRNA V3 region gene, which provided the theory basis and reference to the composite natural preservatives’ mechanism and extended the shelf-life of aquatic products. The results showed that 13 kinds of bacteria were identified by the culture-dependent methods, the dominant bacteria belonged to Shewanella putrefaciens and Pseudomonas fluorescens. By sequencing analysis, 12 kinds of bacteria in main DGGE spectra stripe of cutlassfish. In the later periods, the specific spoilage organism (SSO) for the treatment group with composite natural preservatives and the controlled of cutlassfish were highly similar. Psychrobacter sp. was the main bacterium in the initial stage of the storage. With the extension of storage time, the proportion of Shewanella sp. and Pseudomonas sp. increased gradually and they took the place of Psychrobacter sp. to be the dominant bacteria in the process of storage. Thereinto, Pseudomonas fluorescens and Vibrio sp. both took high proportions in the process of storage. At the same time, composite natural preservatives had an obvious growth inhibition effects on the bacteria of cutlassfish such as Shewanella sp. and Pseudomonas sp..


2017 ◽  
Vol 13 (9) ◽  
Author(s):  
Tielly De Mattos Padilha ◽  
Jamilla Sampaio ◽  
Letícia Longoni ◽  
Anelise Beneduzi

O petróleo e seus derivados são responsáveis por impactos ambientais significativos e a fração dos hidrocarbonetos aromáticos BTEX é amplamente utilizada, mesmo sendo considerada altamente tóxica. Sabendo que áreas com histórico de contaminação de hidrocarbonetos possuem microrganismos capazes de sobreviver ao contaminante e que a biodegradação pode ser utilizada para minimizar ou remover estes poluentes do ambiente, o objetivo deste trabalho foi isolar e identificar linhagens bacterianas degradadoras de hidrocarbonetos do tipo BTEX, provenientes de um solo com histórico de vinte e dois anos de contaminação do setor petroquímico em Triunfo/RS. Para isso foram coletadas amostras de solo em células de landfarming, com histórico de disposição de compostos derivados do petróleo e estas foram preparadas em três concentrações de BTEX (0,5%; 1%; 1,5%) como única fonte de carbono. Foram obtidos 122 isolados e estes foram testados quanto à sua capacidade de biodegradação de 5%, 10% e 20% do contaminante, sendo selecionados onze isolados promissores (linhagens 8, 10, 15, 17, 23, 24, 62, 64, 99, 126 e 128), destacando-se a linhagem 62 (Pseudomonas sp.) que cresceu em 20% de BTEX. Através do sequenciamento do gene 16S rRNA foi possível identificar principalmente isolados dos gêneros Bacillus (linhagens 8, 10, 15, 17 e 23), Pseudomonas (linhagens 24,62, 64, 99 e 128) e um isolado de Paenibacillus jamilae (linhagem 126).O petróleo e seus derivados são responsáveis por impactos ambientais significativos e a fração dos hidrocarbonetos aromáticos BTEX é amplamente utilizada, mesmo sendo considerada altamente tóxica. Sabendo que áreas com histórico de contaminação de hidrocarbonetos possuem microrganismos capazes de sobreviver ao contaminante e que a biodegradação pode ser utilizada para minimizar ou remover estes poluentes do ambiente, o objetivo deste trabalho foi isolar e identificar linhagens bacterianas degradadoras de hidrocarbonetos do tipo BTEX, provenientes de um solo com histórico de vinte e dois anos de contaminação do setor petroquímico em Triunfo/RS. Para isso foram coletadas amostras de solo em células de landfarming, com histórico de disposição de compostos derivados do petróleo e estas foram preparadas em três concentrações de BTEX (0,5%; 1%; 1,5%) como única fonte de carbono. Foram obtidos 122 isolados e estes foram testados quanto à sua capacidade de biodegradação de 5%, 10% e 20% do contaminante, sendo selecionados onze isolados promissores (linhagens 8, 10, 15, 17, 23, 24, 62, 64, 99, 126 e 128), destacando-se a linhagem 62 (Pseudomonas sp.) que cresceu em 20% de BTEX. Através do sequenciamento do gene 16S rRNA foi possível identificar principalmente isolados dos gêneros Bacillus (linhagens 8, 10, 15, 17 e 23), Pseudomonas (linhagens 24,62, 64, 99 e 128) e um isolado de Paenibacillus jamilae (linhagem 126).<w:LsdException Locked="false" Priority="72" Na


2020 ◽  
Vol 22 (1) ◽  
pp. 45-59
Author(s):  
Daniela Hernanández-Sáenz ◽  
Cindy Stephanie Puentes-Morales ◽  
Juan Felipe Mateus-Maldonado ◽  
Lucas David Pedroza-Camacho ◽  
Julio Ramírez-Rodríguez ◽  
...  

Los residuos líquidos producidos al elaborar tinciones biológicas contienen mezclas de compuestos químicos y microorganismos, que generan un elevado impacto ambiental si no son tratados adecuadamente. Por esta razón, en el presente trabajo se evaluaron a Pleurotus ostreatus, Trametes versicolor, Enterobacter xianfangensis, Pseudomonas azotoformans, Pseudomonas sp., Bacillus subtilis y Pseudomonas fluorescens, para el tratamiento de un residuo líquido que contenía colorantes trifenilmetánicos y azóicos, a escala de laboratorio. Inicialmente, se seleccionaron las cepas con menor efecto antagónico y se determinó su potencial para producir las enzimas Lacasa, Manganeso Peroxidasa y Lignino Peroxidasa, al emplear sustratos inductores y mezclas de colorantes. Para el consorcio fúngico/bacteriano la disminución del color y demanda química de oxígeno fueron del 99 % y 70 % a las 96 h. La remoción de estos parámetros se relacionó con la interacción positiva entre las poblaciones de hongos, bacterias y la producción de enzimas ligninolíticas, obteniendo valores a las 96 h de 7.0 y 14.0 unidades logarítmicas para hongos y bacterias, con unas actividades enzimáticas de 75 U/L, 205 U/L y 0.63 U/L para Lacasa, MnP y LiP, respectivamente.


2015 ◽  
Vol 10 (1) ◽  
pp. 51
Author(s):  
Mulyasari Mulyasari ◽  
Irma Melati ◽  
Mas Tri Djoko Sunarno
Keyword(s):  

Kecernaan karbohidrat oleh ikan dapat ditingkatkan antara lain melalui penambahan bakteri selulolitik dalam pakan. Salah satu sumber bakteri selulolitik adalah rumput laut. Oleh karena itu, suatu penelitian dilakukan dengan tujuan untuk mendapatkan bakteri selulolitik dari rumput laut Turbinaria sp. dan Sargassum sp. Bakteri selulolitik diisolasi dengan metode pengenceran, streaking dan spreading pada media carboxymethylcellulose (CMC). Koloni yang didapat dimurnikan dan diseleksi dengan menggunakan uji aktivitas enzim selulase secara kualitatif (zona bening) dan kuantitatif, serta diidentifikasi secara biokimia dan molekuler menggunakan gen 16S-rRNA. Pada penelitian ini diperoleh 22 isolat murni bakteri dengan dua isolat yang mempunyai aktivitas selulolitik tertinggi, yaitu TS2b dan SS4b. Hasil uji biokimia dan karakterisasi secara molekuler menunjukkan bahwa kedua isolat tersebut adalah Bacillus subtilis dan B. megaterium.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Eric J. Raes ◽  
Kristen Karsh ◽  
Swan L. S. Sow ◽  
Martin Ostrowski ◽  
Mark V. Brown ◽  
...  

AbstractGlobal oceanographic monitoring initiatives originally measured abiotic essential ocean variables but are currently incorporating biological and metagenomic sampling programs. There is, however, a large knowledge gap on how to infer bacterial functions, the information sought by biogeochemists, ecologists, and modelers, from the bacterial taxonomic information (produced by bacterial marker gene surveys). Here, we provide a correlative understanding of how a bacterial marker gene (16S rRNA) can be used to infer latitudinal trends for metabolic pathways in global monitoring campaigns. From a transect spanning 7000 km in the South Pacific Ocean we infer ten metabolic pathways from 16S rRNA gene sequences and 11 corresponding metagenome samples, which relate to metabolic processes of primary productivity, temperature-regulated thermodynamic effects, coping strategies for nutrient limitation, energy metabolism, and organic matter degradation. This study demonstrates that low-cost, high-throughput bacterial marker gene data, can be used to infer shifts in the metabolic strategies at the community scale.


Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1519
Author(s):  
Meinan Chang ◽  
Fengtao Ma ◽  
Jingya Wei ◽  
Junhao Liu ◽  
Xuemei Nan ◽  
...  

Previous studies have shown that Bacillus subtilis natto affects rumen fermentation and rumen microbial community structure, which are limited to detect a few microbial abundances using traditional methods. However, the regulation of B. subtilis natto on rumen microorganisms and the mechanisms of microbiota that affect rumen fermentation is still unclear. This study explored the effects of live and autoclaved B. subtilis natto on ruminal microbial composition and diversity in vitro using 16S rRNA gene sequencing and the underlying mechanisms. Rumen fluid was collected, allocated to thirty-six bottles, and divided into three treatments: CTR, blank control group without B. subtilis natto; LBS, CTR with 109 cfu of live B. subtilis natto; and ABS, CTR with 109 cfu of autoclaved B. subtilis natto. The rumen fluid was collected after 0, 6, 12, and 24 h of fermentation, and pH, ammonia nitrogen (NH3-N), microbial protein (MCP), and volatile fatty acids (VFAs) were determined. The diversity and composition of rumen microbiota were assessed by 16S rRNA gene sequencing. The results revealed LBS affected the concentrations of NH3-N, MCP, and VFAs (p < 0.05), especially after 12 h, which might be attributed to changes in 18 genera. Whereas ABS only enhanced pH and NH3-N concentration compared with the CTR group (p < 0.05), which might be associated with changes in six genera. Supplementation with live B. subtilis natto improved ruminal NH3-N and propionate concentrations, indicating that live bacteria were better than autoclaved ones. This study advances our understanding of B. subtilis natto in promoting ruminal fermentation, providing a new perspective for the precise utilization of B. subtilis natto in dairy rations.


2020 ◽  
Vol 16 (1) ◽  
pp. 37-48
Author(s):  
Ratna Sari Dewi ◽  
Giyanto Giyanto ◽  
Meity Suradji Sinaga ◽  
Dadang Dadang ◽  
Bambang Nuryanto

Saat ini teknologi pengendalian hayati penyakit utama padi terus berkembang. Dalam pengembangan teknologi pengendalian hayati, mekanisme penghambatan patogen dalam perkembangan penyakit pada suatu populasi tumbuhan dalam area tertentu menjadi hal yang penting. Penelitian bertujuan mendapatkan bakteri agens hayati potensial dalam pengendalian penyakit penting padi di antaranya yang disebabkan Pyricularia oryzae, Xanthomnas oryzae pv. oryzae, Rhizoctonia solani, Burkholderia glumae, dan Drechlera oryzae, berdasarkan mekanisme antagonisme, kemampuan menginduksi ketahanan dan mendukung kebugaran tanaman, serta kompatibilitas antaragens hayati. Ralstonia pickettii TT47, Pseudomonas fluorescens P12, Chromobacterium sp. T51118, Bacillus subtilis 451 dan 154, serta Streptomyces sp. T51105 dibuktikan memiliki mekanisme antibiosis dengan menghasilkan metabolit sekunder dan senyawa volatil. Berdasarkan uji produksi enzim kitinolitik Chromobacterium sp. dan Streptomyces sp. memiliki mekanisme lisis. Aktivitas antibiotik R. pickettii dan P. fluorescens tergolong kuat terhadap P. oryzae dengan penekanan secara berurutan sebesar 79.68% dan 77.59% pada uji biakan ganda. Penekanan pertumbuhan miselium P. oryzae dan R. solani pada uji volatil mencapai 100% oleh Chromobacterium sp. Semua agens hayati umumnya mampu menginduksi ketahanan dan mendukung kebugaran tanaman. Uji kompatibilitas menunjukan R. pickettii, P. fluorescens, dan Chromobacterium sp. bersifat kompatibel. Dari hasil penelitian diperoleh tiga bakteri agens hayati dengan kategori unggul, yaitu P. fluorescens P12, R. pickettii TT47, dan Chromobacterium sp. T51118. Ketiganya mampu menekan pertumbuhan patogen, menginduksi ketahanan dan mendukung kebugaran tanaman, memiliki patogen sasaran yang lebih beragam, serta bersifat kompatibel.


2021 ◽  
Vol 43 (3) ◽  
pp. 27-35
Author(s):  
Pham Viet Cuong ◽  
Nguyen Phuong Hoa

The bacteria capable of fixing atmospheric nitrogen were isolated from cassava cultivated soils of Vietnam. The potential isolates were identified by analyzing the 16S rRNA gene and by morphological, biochemical, cultural characteristics. The selected isolates were assigned to the species Bacillus sp. DQT2 M17, Bacillus subtilis DTAN6 M17, and Bacillus megaterium DSHB I8. The effect of culture conditions on the nitrogen-fixing activity of three selected isolates were studied and the obtained results showed that the highest amount of accumulated ammonia was detected after 6 days of incubation at 35 oC, pH 7.0 with sucrose as a carbon source. The selected strains could be exploited as inoculants for microbial fertilizer production.


Author(s):  
Umeh Odera Richard ◽  
E. I. Chukwura ◽  
Ibo Eziafakaego Mercy

A fish pond with recommended water quality will produce healthy fishes. Fish ponds with poor water quality will cause fish mortality and outbreak of diseases to fish consumers. Physicochemical analysis was done using standard analytical methods, the total bacterial count was determined by dilution and membrane filtration techniques. Parasitological analysis was done using the centrifugation method. A total of fifteen well waters were sampled during wet season. Results showed that the temperature ranged from 27°C to 29°C, pH, 6.21 to 8.15; dissolved oxygen, 4.28 mg/l to 5.78 mg/l, electrical conductivity, 166.36 µs/cm to 394.00 µs/cm; total dissolved solids, 41 mg/l to 121 mg/l; total suspended solids, 1.00 mg/l to 19.40 mg/l; total solids, 42.00 mg/l to 140.4 mg/l; turbidity values, 7.01 NTU to 10.36 NTU; nitrate, 3.10 mg/l to 28.00 mg/l; total alkalinity, 36 mg/l to 91 mg/l; phosphate, 1.26 mg/l to 13.11 mg/l; sulphate, 0.39 mg/l to 4.37 mg/l; total chloride, 7.08 mg/l to 14.19 mg/l; carbonates, 1.33 mg/l to 2.35 mg/l; bicarbonates, 34.59 mg/l to 89.38 mg/l; total hardness, 25.31 mg/l to 53.04 mg/l; calcium hardness, 23.94 mg/l to 51.96 mg/l; magnesium hardness, 1.08 mg/l to 4.20 mg/l; total acidity, 2 mg/l to 22 mg/l; potassium, 0.04 mg/l to 2.23 mg/l; cadmium, 0.00 mg/l to 0.04 mg/l; lead, 0.01 mg/l - 0.16 mg/l; chromium, 0.00 mg/l - 0.03 mg/l; mercury was not detected, copper, 0.00 mg/l - 0.04 mg/l; arsenic, 0.00 mg/l - 0.02 mg/l; zinc, 0.00 mg/l to 0.02 mg/l; iron, 0.01 mg/l - 1.19 mg/l. The total bacterial counts ranged from 3.60-4.12 log cfu/ml; total coliforms, 14-46 cfu/100ml, Vibrio cholerae, 0-11 cfu/100ml; Vibrio parahaemolyticus, 0-15 cfu/100ml; faecal coliform, 1-9 cfu/100 ml; Acinetobacter calcoaceticus, 0-8 cfu/100 ml; Bacillus subtilis, 0-9 cfu/ml; Staphylococcus aureus, 0-5 cfu/ml; Pseudomonas aeruginosa, 0-12 cfu/100 ml; Pseudomonas fluorescens, 0-12 cfu/100 ml and Clostridium perfringens were not detected in any of the samples. Twelve bacterial species namely Klebsiella pneumoniae, Acinetobacter calcoaceticus, Escherichia coli, Staphylococcus aureus, Vibrio cholerae, Pseudomonas fluorescens, Pseudomonas aeruginosa, Proteus mirabilis, Vibrio parahaemolyticus, Bacillus subtilis, Shigella flexineri and Salmonella typhi were isolated and identified using standard analytical and molecular procedures. Parasites identified were Ichthyobodo species, Diplostomum species, Myxobolus species, Chilodonella species, Bothriocephalus species, Ambiphrya species and Leech species. Salmonella typhi had the highest frequency of isolation (20.63%) while Acinetobacter calcoaceticus and Staphylococcus aureus had the lowest frequency of isolation (2.83%). Ichthyobodo species had the highest frequency of isolation (21.43%) while Leech species had the lowest frequency of isolation (5.71%). Some of the physicochemical, bacteriological and parasitological parameters had values above World Health Organization admissible limits and therefore proper sanitary practices and water treatments must be employed to prevent epidemic among fish consumers.


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