scholarly journals Identification of arsenic resistant bacterial isolates from semi arid coal mine tailings of Assam using 16S rRNA phylogeny

2020 ◽  
Vol 15 (12) ◽  
pp. 869-874
Author(s):  
Alka Singh ◽  
Zootaxa ◽  
2004 ◽  
Vol 593 (1) ◽  
pp. 1 ◽  
Author(s):  
CHARLES E. COOK ◽  
JEREMY J. AUSTIN ◽  
R. HENRY L. DISNEY

Phylogenetic analysis of mitochondrial 12S and 16S rRNA gene sequences supports the monophyly of the Phoridae. Within this family the Phorinae clade includes two aberrant termitophilous subfamilies, the Thaumatoxeninae and the Termitoxeniinae, which cluster with Dohrniphora and Diplonevra. These two genera include termitophiles and parasitoids of termites, so we hypothesize that these termitophilous phorids are a monophyletic group. While the data neither refute nor support the assumed monophyly of the Metopininae, the genera of this subfamily were not monophyletic in our analysis, but fell into two subclades that correspond with the tribes Metopinini and Gymnophorini.


2005 ◽  
Vol 71 (7) ◽  
pp. 4127-4131 ◽  
Author(s):  
Laura Steindler ◽  
Dorothée Huchon ◽  
Adi Avni ◽  
Micha Ilan

ABSTRACT Phylogenetic analyses of 16S rRNA sequences of sponge-associated cyanobacteria showed them to be polyphyletic, implying that they derived from multiple independent symbiotic events. Most of the symbiont sequences were affiliated to a group of Synechococcus and Prochlorococcus species. However, other symbionts were related to different groups, such as the Oscillatoriales.


2010 ◽  
Vol 192 (23) ◽  
pp. 6315-6316 ◽  
Author(s):  
Ilnam Kang ◽  
Hyun-Myung Oh ◽  
Kevin L. Vergin ◽  
Stephen J. Giovannoni ◽  
Jang-Cheon Cho

ABSTRACT Here we announce the genome sequence of a marine bacterium, HTCC2150, that was isolated off the Oregon coast using dilution-to-extinction culturing and that is affiliated with the Roseobacter clade. The 16S rRNA phylogeny showed that the strain was closely related to members of the RCA clade. The genome sequence suggests that strain HTCC2150 is an organoheterotroph carrying diverse metabolic potential, including a close relationship with phytoplankton.


Toxics ◽  
2021 ◽  
Vol 9 (7) ◽  
pp. 164
Author(s):  
Honorine Gauthier-Manuel ◽  
Diane Radola ◽  
Flavien Choulet ◽  
Martine Buatier ◽  
Raphaël Vauthier ◽  
...  

Over the course of history, the development of human societies implied the exploitation of mineral resources which generated huge amounts of mining wastes leading to substantial environmental contamination by various metal(loid)s. This is especially the case of coal mine tailings which, subjected to weathering reactions, produce acid mine drainage (AMD), a recurring ecological issue related to current and past mining activities. In this study, we aimed to determine the origin, the fate and the ecotoxicity of metal(loid)s leached from a historical coal tailing heap to the Beuveroux river (Franche-Comté, France) using a combination of mineralogical, chemical and biological approaches. In the constitutive materials of the tailings, we identified galena, tetrahedrite and bournonite as metal-rich minerals and their weathering has led to massive contamination of the water and suspended particles of the river bordering the heap. The ecotoxicity of the AMD has been assessed using Chironomus riparius larvae encaged in the field during a one-month biomonitoring campaign. The larvae showed lethal and sub-lethal (growth and emergence inhibition and delay) impairments at the AMD tributary and near downstream stations. Metal bioaccumulation and subcellular fractionation in the larvae tissues revealed a strong bioavailability of, notably, As, Pb and Tl explaining the observed biological responses. Thus, more than 70 years after the end of mining operations, the coal tailings remain a chronic source of contamination and environmental risks in AMD effluent receiving waters.


Author(s):  
O. Aleruchi ◽  
O. Obire

This investigation focuses on molecular identification of antibiotic resistant bacteria isolated from petroleum producing vicinity using 16S rRNA sequencing based technique. The bacterial 16s rRNA gene sequences were amplified using polymerase chain reaction, sequenced,  characterized and compared by using primers which has been compared to national center for biotechnology information (NCBI) sequence database. The presence of the plasmid mediated antibiotic resistance determinants CTX-M and QNRB genes in the bacterial isolates were analyzed. A total of four bacterial isolates that were resistant to all the antibiotic agents used were identified molecularly. The BLAST results showed 100 % similarity and phylogenetic study indicated that the genes were evolutionarily related to Morganella morganii, Pseudomonas xiamenensis, Chryseobacterium cucumeris and Staphylococcus sp., respectively. The genes obtained were submitted to the NCBI gene bank and were assigned accession number; MN094330, MN094331, MN094332 and MN094333, respectively. CTX-M and QNRB genes were however absent in the bacterial isolates. The result identified some peculiar abilities of the bacterial isolates to be resistant to antibiotics and suggests a correlation with resistance and hydrocarbon utilizing bacteria. The level of resistance could be as a result of the disinfection process during wastewater treatment procedure or the same adaptive mechanisms possessed by the isolates to control the hydrocarbon concentration in their cell. The study also clearly indicates that these wastewaters, when discharged into the environment directly may pose a risk for the spread of antibiotic resistant bacteria.


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