scholarly journals Lineage tracing of genome-edited alleles reveals high fidelity axolotl limb regeneration

eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
Grant Parker Flowers ◽  
Lucas D Sanor ◽  
Craig M Crews

Salamanders are unparalleled among tetrapods in their ability to regenerate many structures, including entire limbs, and the study of this ability may provide insights into human regenerative therapies. The complex structure of the limb poses challenges to the investigation of the cellular and molecular basis of its regeneration. Using CRISPR/Cas, we genetically labelled unique cell lineages within the developing axolotl embryo and tracked the frequency of each lineage within amputated and fully regenerated limbs. This allowed us, for the first time, to assess the contributions of multiple low frequency cell lineages to the regenerating limb at once. Our comparisons reveal that regenerated limbs are high fidelity replicas of the originals even after repeated amputations.

2019 ◽  
Author(s):  
Ismael Fernández-Hernández ◽  
Evan B. Marsh ◽  
Michael A. Bonaguidi

ABSTRACTAuditory and vestibular mechanosensory hair cells do not regenerate following injury or aging in the adult mammalian inner ear, inducing irreversible hearing loss and balance disorders for millions of people. Research on model systems showing replacement of mechanosensory cells can provide mechanistic insights into developing new regenerative therapies. Here, we developed lineage tracing systems to reveal, for the first time, the generation of mechanosensory neurons in the Johnston’s Organ (JO) of intact adult Drosophila, which are the functional counterparts to hair cells in vertebrates. New JO neurons develop cilia, express an essential mechano-transducer gene and target central brain circuitry. Furthermore, we identified self-replication of JO neurons as an unexpected mechanism of neuronal plasticity, which is enhanced upon treatment with experimental and ototoxic compounds. Our findings introduce a new platform to expedite research about mechanisms and compounds mediating mechanosensory cell regeneration, with implications for hearing and balance restoration in humans.SUMMARY STATEMENTUsing refined lineage tracing and live imaging, we identified self-renewal of mechanosensory neurons in adult Drosophila, the functional counterparts to vertebrate hair cells, and their enhanced regeneration through pharmacological administration.


2021 ◽  
Vol 5 (1) ◽  
Author(s):  
Erik Buhmann ◽  
Sascha Diefenbacher ◽  
Engin Eren ◽  
Frank Gaede ◽  
Gregor Kasieczka ◽  
...  

AbstractAccurate simulation of physical processes is crucial for the success of modern particle physics. However, simulating the development and interaction of particle showers with calorimeter detectors is a time consuming process and drives the computing needs of large experiments at the LHC and future colliders. Recently, generative machine learning models based on deep neural networks have shown promise in speeding up this task by several orders of magnitude. We investigate the use of a new architecture—the Bounded Information Bottleneck Autoencoder—for modelling electromagnetic showers in the central region of the Silicon-Tungsten calorimeter of the proposed International Large Detector. Combined with a novel second post-processing network, this approach achieves an accurate simulation of differential distributions including for the first time the shape of the minimum-ionizing-particle peak compared to a full Geant4 simulation for a high-granularity calorimeter with 27k simulated channels. The results are validated by comparing to established architectures. Our results further strengthen the case of using generative networks for fast simulation and demonstrate that physically relevant differential distributions can be described with high accuracy.


2018 ◽  
Vol 32 (5) ◽  
pp. 23-25 ◽  
Author(s):  
Lucie Cuvelier

Purpose This paper aims to review the latest management developments across the globe and pinpoint practical implications from cutting-edge research and case studies. Design/methodology/approach This briefing is prepared by an independent writer who adds their own impartial comments and places the articles in context. Findings An operative approach is described that is designed to structure the debriefing along three axes. Practical implications The paper provides strategic insights and practical thinking that have influenced some of the world’s leading organizations. Originality/value The briefing saves busy executives and researchers hours of reading time by selecting only the very best, most pertinent information and presenting it in a condensed and easy-to-digest format.


2013 ◽  
Vol 3 (5) ◽  
pp. 851-863 ◽  
Author(s):  
Daniel L Mace ◽  
Peter Weisdepp ◽  
Louis Gevirtzman ◽  
Thomas Boyle ◽  
Robert H Waterston

Author(s):  
L. I. Menegbo ◽  
J. L. Konne ◽  
N. Boisa

The Electrochemical Impedance Spectroscopy (EIS) measurements of Sol-gel synthesized ZnO, CuO and their respective hydrogenated phases (ZnO:H and CuO:H) for  a proton-type battery model has been reported for the first time. The XRD patterns confirmed that CuO and ZnO were phase pure with minor impurities. However, that of CuO:H showed mixed phases of CuO and Cu2O with the later  appearing prominent. The estimated particle sizes of ZnO, ZnO:H, CuO and CuO:H obtained using Scherrers’ equation were 17.83, 17.75, 21.63 and 15.42 nm respectively, showing remarkable particle size reductions upon hydrogenation as oxygen vacancies were substituted with smaller hydrogen ions. Nyquist plots from the EIS experimental data recorded over a frequency range of 100 kHz – 5 mHz showed expected flat semicircles at the high frequency region and straight lines at the low frequency regions while resistance estimations from the intercepts of the Bode plots were 12.10, 7.80, 16.00 and 10.80 Ω for ZnO, ZnO:H, CuO and CuO:H respectively. It also indicated high gain margins suggesting impressive electrochemical properties for battery applications.


Fractals ◽  
2021 ◽  
Vol 29 (02) ◽  
pp. 2150123
Author(s):  
HAMIDREZA NAMAZI ◽  
ALI SELAMAT ◽  
ONDREJ KREJCAR

The coronavirus has influenced the lives of many people since its identification in 1960. In general, there are seven types of coronavirus. Although some types of this virus, including 229E, NL63, OC43, and HKU1, cause mild to moderate illness, SARS-CoV, MERS-CoV, and SARS-CoV-2 have shown to have severer effects on the human body. Specifically, the recent known type of coronavirus, SARS-CoV-2, has affected the lives of many people around the world since late 2019 with the disease named COVID-19. In this paper, for the first time, we investigated the variations among the complex structures of coronaviruses. We employed the fractal dimension, approximate entropy, and sample entropy as the measures of complexity. Based on the obtained results, SARS-CoV-2 has a significantly different complex structure than SARS-CoV and MERS-CoV. To study the high mutation rate of SARS-CoV-2, we also analyzed the long-term memory of genome walks for different coronaviruses using the Hurst exponent. The results demonstrated that the SARS-CoV-2 shows the lowest memory in its genome walk, explaining the errors in copying the sequences along the genome that results in the virus mutation.


Blood ◽  
2019 ◽  
Vol 134 (Supplement_1) ◽  
pp. 939-939
Author(s):  
Albert Kolomansky ◽  
Naamit Deshet-Unger ◽  
Nathalie Ben-Califa ◽  
Zamzam Awida ◽  
Maria Ibrahim ◽  
...  

Background and aims: Erythropoietin (EPO) is the key regulator of red blood cell production, commonly used in clinical practice to treat certain forms of anemia. Our studies and those of others have demonstrated that EPO administration induces substantial trabecular bone loss. We proposed that EPO-induced bone loss is partially mediated by subsets of bone marrow (BM) B cells that express EPO-R. Mechanistically, EPO upregulates the surface expression of RANKL by BM B cells and augments B cell-derived osteoclastogenesis in vitro. We showed that the latter is likely mediated by pro-B cells expressing the MCS-F receptor (CD115) and capable of transdifferentiation to osteoclasts (Abstract # 1007, EHA 2017). Here we address the role of B cell-specific EPO-R in EPO-induced bone loss (i.e. at supra-physiological EPO levels). Moreover, we demonstrate, for the first time, the occurrence of B cell-derived osteoclastogenesis in vivo, a finding of critical importance in the field of osteohematology. Methods: In order to trace the B cell lineage from its earliest precursors, we used the MB1-Cre mouse line combined with either the R26R-EYFP or the EPO-Rfl/fl mice for lineage tracing and B cell-specific EPO-R knockdown, respectively. Sequential fluorescence and light microscopy were used for the demonstration of B cell-derived osteoclastogenesis in vivo. Human recombinant EPO was administered in vivo at a dose of 180IU thrice weekly for two weeks. Immunophenotyping of BM B cell populations was assessed by multi-color flow cytometry. Results: Using female MB1-Cre; EPO-Rfl/fl (cKD) mice, we found that B cell-specific EPO-R knockdown attenuated the profound EPO-induced trabecular bone loss in the proximal part of the femoral distal metaphysis (proximal BV/TV 0.034±0.012% vs 0.007±0.003% in the cKD vs control mice, p<0.05, Figure 1). Remarkably, this effect was observed despite the fact that cKD mice attained higher hemoglobin levels following EPO treatment (21.1±0.1 mg/dL vs 20.4±0.2 mg/dL in the cKD vs control mice, p<0.05). An EPO-induced increase in CD115+ Pro-B cells was observed in EPO-treated control mice but was absent in the cKD mice. The latter finding correlates with the observed bone loss and indicates that the increased number of MCSF-R-expressing pro-B cells is dependent on B cell EPO-R. Supporting the osteoclastic potential of this specific B cell subpopulation is the fact that most of the CD115+ Pro-B cells also express β3 integrin (CD61) which is essential for osteoclast differentiation and function. Using the MB1-Cre;R26R-EYFP murine model for B cell lineage tracing, we could demonstrate that some of the TRAP+/ β3 integrin+ bone lining cells were also positive for EYFP (Figure 2). This demonstrates the B cell origin of some of the osteoclasts in vivo. Conclusions: Our work highlights B cells as an important extra-erythropoietic target of EPO-EPO-R signaling that regulates bone homeostasis and might also indirectly affect EPO-stimulated erythropoietic response. The relevance and the mechanisms of the latter phenomenon merits further investigation. Importantly, we present here, for the first time, histological evidence for B cell-derived osteoclastogenesis in vivo, thus opening novel research avenues. DN and YG Equal contribution Funded by the German Israel Foundation, Grant # 01021017 to YG, DN, MR and BW and by the Israel Science Foundation (ISF) Grant No. 343/17 to DN. Disclosures Mittelman: Novartis: Honoraria, Research Funding, Speakers Bureau.


2020 ◽  
Vol 494 (3) ◽  
pp. 3061-3079 ◽  
Author(s):  
D J Rosario ◽  
V A Fawcett ◽  
L Klindt ◽  
D M Alexander ◽  
L K Morabito ◽  
...  

ABSTRACT Red quasi-stellar objects (QSOs) are a subset of the luminous end of the cosmic population of active galactic nuclei (AGNs), most of which are reddened by intervening dust along the line of sight towards their central engines. In recent work from our team, we developed a systematic technique to select red QSOs from the Sloan Digital Sky Survey, and demonstrated that they have distinctive radio properties using the Faint Images of the Radio Sky at Twenty centimetres radio survey. Here we expand our study using low-frequency radio data from the LOFAR Two-metre Sky Survey (LoTSS). With the improvement in depth that LoTSS offers, we confirm key results: Compared to a control sample of normal ‘blue’ QSOs matched in redshift and accretion power, red QSOs have a higher radio detection rate and a higher incidence of compact radio morphologies. For the first time, we also demonstrate that these differences arise primarily in sources of intermediate radio loudness: Radio-intermediate red QSOs are × 3 more common than typical QSOs, but the excess diminishes among the most radio-loud systems and the most radio-quiet systems in our study. We develop Monte Carlo simulations to explore whether differences in star formation could explain these results, and conclude that, while star formation is an important source of low-frequency emission among radio-quiet QSOs, a population of AGN-driven compact radio sources is the most likely cause for the distinct low-frequency radio properties of red QSOs. Our study substantiates the conclusion that fundamental differences must exist between the red and normal blue QSO populations.


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