scholarly journals Unexpected mitochondrial lineage diversity within the genus Alonella Sars, 1862 (Crustacea: Cladocera) across the Northern Hemisphere

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e10804
Author(s):  
Anna N. Neretina ◽  
Dmitry P. Karabanov ◽  
Veronika Sacherova ◽  
Alexey A. Kotov
Keyword(s):  
Species Diversity ◽  
Northern Hemisphere ◽  
Distribution Patterns ◽  
Mitochondrial Lineage ◽  
Broad Distribution ◽  
Distribution Ranges ◽  
Coi Sequences ◽  
Phylogenetic Lineages ◽  
Rrna Sequences ◽  
Lineage Diversity

Representatives of the genus Alonella Sars (Crustacea: Cladocera: Chydorinae) belong to the smallest known water fleas. Although species of Alonella are widely distributed and often abundant in acidic and mountain water bodies, their diversity is poorly studied. Morphological and genetic approaches have been complicated by the minute size of these microcrustaceans. As a result, taxonomists have avoided revising these species. Here, we present genetic data on Alonella species diversity across the Northern Hemisphere with particular attention to the A. excisa species complex. We analyzed 82 16S rRNA sequences (all newly obtained), and 78 COI sequences (39 were newly obtained). The results revealed at least twelve divergent phylogenetic lineages, possible cryptic species, of Alonella, with different distribution patterns. As expected, the potential species diversity of this genus is significantly higher than traditionally accepted. The A. excisa complex is represented by nine divergent clades in the Northern Hemisphere, some of them have relatively broad distribution ranges and others are more locally distributed. Our results provide a genetic background for subsequent morphological analyses, formal descriptions of Alonella species and detailed phylogeographical studies.

scholarly journals Toward a global reference database of COI barcodes for marine zooplankton

2021 ◽  
Vol 168 (6) ◽  
Author(s):  
Ann Bucklin ◽  
Katja T. C. A. Peijnenburg ◽  
Ksenia N. Kosobokova ◽  
Todd D. O’Brien ◽  
Leocadio Blanco-Bercial ◽  
...  
Keyword(s):  
Species Diversity ◽  
Dna Sequences ◽  
Reference Sequence ◽  
Global Ocean ◽  
Reference Database ◽  
Data Repositories ◽  
Marine Zooplankton ◽  
The North ◽  
Coi Sequences ◽  
Taxonomic Groups

AbstractCharacterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change.

scholarly journals Southeast Asia as One of World’s Primary Sources of Biotic Recolonization Following Anthropocene Extinctions

2021 ◽  
Vol 9 ◽  
Author(s):  
Şerban Procheş ◽  
Syd Ramdhani ◽  
Alice C. Hughes ◽  
Lian Pin Koh
Keyword(s):  
Distribution Patterns ◽  
Climatic Conditions ◽  
Habitat Destruction ◽  
Conservation Priorities ◽  
High Survival ◽  
The North ◽  
Starting Point ◽  
Ancient Lineage ◽  
The Face ◽  
Lineage Diversity

The plight of Southeast Asia’s animals, plants and ecosystems in the face of unsustainable exploitation and habitat destruction has been illustrated in several recent studies, despite often falling outside the global discourse on global conservation priorities. Here, we collate biogeographic and phylogenetic information to argue that this beleaguered region is one of world’s primary macrorefugia, and possibly its best chance of regaining its natural biodiversity distribution patterns after the current Anthropocene upheaval. The region uniquely combines top diversity values in (a) ancient lineage diversity and (b) cosmopolitan lineage diversity, suggesting that it has acted in the past as a biodiversity museum and source of global colonization. This is at least partly due to the interplay between latitudinal diversity gradients and continental connectivity patterns. However, the peak values in South China/North Indochina for cosmopolitan tetrapods and their sister lineages suggest that a key feature is also the availability of diverse climatic conditions. In particular, the north-south orientation of the mountain ranges here has allowed for rapid recolonization within the region following past climatic changes, resulting in high survival values and overall exceptional relict lineage diversity. From this starting point, global colonization occurred on multiple occasions. It is hoped that, with urgent action, the region can once again fulfill this function.

scholarly journals Phytogeographic support tor the theory of Pleistocene forest refuges in the Amazon Basin, based on evidence from distribution patterns in Caryocaraceae, Chrysobalanaceae, Dichapetalaceae and Lecythidaceae

1973 ◽  
Vol 3 (3) ◽  
pp. 5-26 ◽  
Author(s):  
Ghillean T. Prance
Keyword(s):  
Species Diversity ◽  
Amazon Basin ◽  
Forest Cover ◽  
Woody Plant ◽  
Distribution Patterns ◽  
Genetic Isolation ◽  
Lowland Forest ◽  
Previous Evidence ◽  
Plant Families ◽  
Refuge Areas

Abstract In recent years it has generally been accepted that Amazonia was subject to long dry periods in the late Pleistocene and post-Pleistocene which induced forest cover to a few limited areas or refuges. It has been proposed that the subsequent genetic isolation into separate populations is a mnjor factor in the evolution of the species diversity within the lowland forest of Amazonia. Most of the previous evidence for this theory is based on studies of animals, for example: lizards, butterflies, and birds. Here data are presented to confirm the theory of forest refuges using evidence from phytogeography. Distribution patterns of the lowland species of the woody plant families Caryocaraceae, Chrysobalanaceae, Dichapetalaceae and Lecythidaceae are discussed and concur with the possibility of forest refuges. A map is given of the refuge areas that seem most likely, based on evidence from species distribution of the above plant families. The refuges proposed here correspond closely with the refuge areas proposed by Haffer and Brown rather than the extremely reduced areas proposed by Vanzolini.

Species diversity, distribution patterns, and substrate specificity of Strobilurus

Mycologia ◽  
2018 ◽  
Vol 110 (3) ◽  
pp. 584-604 ◽  
Author(s):  
Jiao Qin ◽  
Egon Horak ◽  
Flavius Popa ◽  
Karl-Heinz Rexer ◽  
Gerhard Kost ◽  
...  
Keyword(s):  
Species Diversity ◽  
Substrate Specificity ◽  
Distribution Patterns

scholarly journals Subfossil chironomids (Diptera, Chironomidae) of lakes in the Tatra Mountains: an illustrated guide

Zootaxa ◽  
2020 ◽  
Vol 4819 (2) ◽  
pp. 216-264
Author(s):  
TÍMEA CHAMUTIOVÁ ◽  
LADISLAV HAMERLÍK ◽  
PETER BITUŠÍK
Keyword(s):  
Surface Sediments ◽  
Type A ◽  
Distribution Patterns ◽  
Type B ◽  
Tatra Mountains ◽  
Broad Distribution ◽  
Subfossil Chironomids ◽  
Carpathian Region ◽  
Tatra Mts ◽  
The Tatra Mountains

Here we present a summary of subfossil chironomids (Diptera: Chironomidae) found in the surface sediments of 52 Tatra Mts. lakes (Slovakia, Poland). Head capsules of 73 morphotypes of 5 subfamilies are described and illustrated. In addition to the previously documented subfossils by Brooks et al. (2007), we present 15 new morphotypes: Diamesa Tatra-type A, Diamesa Tatra-type B, Pseudodiamesa branickii-type, Pseudodiamesa nivosa-type, Pseudokiefferiella parva, Brillia bifida-type, Cricotopus (Paratrichocladius) skirwithensis-type, Cricotopus (Cricotopus) tremulus-type, Cricotopus/Orthocladius I, Eukiefferiella brevicalcar-type, Eukiefferiella claripennis-type B, Orthocladius (Orthocladius) dentifer-type, O. (Mesorthocladius) frigidus, Orthocladius (Euorthocladius) sp. and Tanytarsini indet. Most of these types have possibly broad distribution patterns in Europe. We believe that due to specific features of each region, this paper will serve as a helpful manual for limnologists and paleolimnologists working not only in the Tatra Mts. but also in the whole Carpathian region.

scholarly journals Marine Cyanophages Demonstrate Biogeographic Patterns throughout the Global Ocean

2014 ◽  
Vol 81 (1) ◽  
pp. 441-452 ◽  
Author(s):  
Sijun Huang ◽  
Si Zhang ◽  
Nianzhi Jiao ◽  
Feng Chen
Keyword(s):  
Strong Correlation ◽  
Multivariate Analyses ◽  
Distribution Patterns ◽  
Mantel Test ◽  
Global Ocean ◽  
Broad Host Range ◽  
Content Type ◽  
Biogeographic Patterns ◽  
Phylogenetic Lineages ◽  
Distinct Distribution

ABSTRACTMyoviruses and podoviruses that infect cyanobacteria are the two major groups of marine cyanophages, but little is known of how their phylogenetic lineages are distributed in different habitats. In this study, we analyzed the phylogenetic relationships of cyanopodoviruses and cyanomyoviruses based on the existing genomes. The 28 cyanomyoviruses were classified into four clusters (I to IV), and 19 of the 20 cyanopodoviruses were classified into two clusters, MPP-A and MPP-B, with four subclusters within cluster MPP-B. These genomes were used to recruit cyanophage-like fragments from microbial and viral metagenomes to estimate the relative abundances of these cyanophage lineages. Our results showed that cyanopodoviruses and cyanomyoviruses are both abundant in various marine environments and that clusters MPP-B, II and III appear to be the most dominant lineages. Cyanopodoviruses and cluster I and IV cyanomyoviruses exhibited habitat-related variability in their relative levels of abundance, while cluster II and III cyanomyoviruses appeared to be consistently dominant in various habitats. Multivariate analyses showed that reads that mapped toSynechococcusphages andProchlorococcusphages had distinct distribution patterns that were significantly correlated to those ofSynechococcusandProchlorococcus, respectively. The Mantel test also revealed a strong correlation between the community compositions of cyanophages and picocyanobacteria. Given that cyanomyoviruses tend to have a broad host range and some can cross-infectSynechococcusandProchlorococcus, while cyanopodoviruses are commonly host specific, the observation that their community compositions both correlated significantly with that of picocyanobacteria was unexpected. Although cyanomyoviruses and cyanopodoviruses differ in host specificity, their biogeographic distributions are likely both constrained by the picocyanobacterial community.

scholarly journals Species Diversity and Distribution Patterns of the Ants of Amazonian Ecuador

PLoS ONE ◽  
2010 ◽  
Vol 5 (10) ◽  
pp. e13146 ◽  
Author(s):  
Kari T. Ryder Wilkie ◽  
Amy L. Mertl ◽  
James F. A. Traniello
Keyword(s):  
Species Diversity ◽  
Distribution Patterns ◽  
Amazonian Ecuador

Underestimated anuran radiations in the high Andes: five new species and a new genus of Holoadeninae, and their phylogenetic relationships (Anura: Craugastoridae)

2017 ◽  
Vol 182 (1) ◽  
pp. 129-172 ◽  
Author(s):  
Ignacio De la Riva ◽  
Juan C Chaparro ◽  
Santiago Castroviejo-Fisher ◽  
José M Padial
Keyword(s):  
New Species ◽  
Species Diversity ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Distribution Patterns ◽  
Southern Peru ◽  
The Andes ◽  
Close Relationship ◽  
Molecular Phylogenetic ◽  
Taxonomic Research

AbstractDespite recent efforts to accelerate exploration and species description, the diversity of high Andean frogs remains highly underestimated. We report high levels of species diversity in direct-developing frogs or terraranas inhabiting the wet puna and adjacent cloud forests of the Amazonian versant of the Andes in Bolivia and Peru. Descriptive evidence of external morphology, distribution patterns and molecular phylogenetic analyses support the existence of nine unnamed species in two clades, which represents a 30% increase in species diversity for those clades. The relationships of these species and their relatives in Holoadeninae are tested using nuclear and mitochondrial genes for 159 terminals representing the 11 genera in this subfamily and 25 species of previously unknown relationships. Our results corroborate species monophyly in all but three cases and support the monophyly of all Holoadeninae genera, albeit the position of some differs between analyses. We propose a new genus (Microkayla gen. nov.) for the clade containing all Bolivian species formerly in Psychrophrynella plus five species from southern Peru. The new genus is monophyletic and supported by anatomical synapomorphies. Psychrophrynella is re-diagnosed and redefined to include three species from the Andes of southern Peru. We discuss the taxonomic instability associated with Noblella and Psychrophrynella due to the fact that the type species of both genera share a number of traits that support a close relationship. We also name and describe three new species of Bryophryne and two of Microkayla from Peru, provide baseline data for the future description of four Bolivian species of Microkayla, and describe the unknown mating calls of two species. Our results support that the grasslands of the Amazonian versant of the Andes harbour a large diversity of species with small altitudinal and horizontal distributions that replace each other along a latitudinal axis. These species belong to different lineages whose closest relatives are forest species, often from distant parts of the continent. These patterns suggest that high Andean environments were colonized several times independently by species with forest ancestors and which radiated into a multitude of species with remarkably similar ecomorphologies. The extent of these radiations remains obscured by a still rudimentary knowledge of species diversity due to insufficient fieldwork and taxonomic research.

scholarly journals On the Life Cycle and Natural History of Hymenitis Nero (Lepidoptera: Ithomiinae) in Costa Rica

1972 ◽  
Vol 79 (4) ◽  
pp. 284-294 ◽  
Author(s):  
Allen M. Young
Keyword(s):  
Life Cycle ◽  
Costa Rica ◽  
Natural History ◽  
Population Biology ◽  
Distribution Patterns ◽  
Broad Distribution ◽  
Tropical Plant ◽  
History Of ◽  
Local Patterns ◽  
Tropical Plant Communities

A knowledge of life cycle and natural history are often important prerequisites to studies of population biology in butterflies. Although studies on the systematics and broad distribution patterns of that familiar New World Tropical group, the Ithomiinae, have been conducted (Seitz, 194; Fox, 1956; Fox, 1968), a lot remains to be known about the biology of many species in Central America. This is surprising in light of the considerable interest in these butterflies as members of mimicry complexes. In this spirit, this paper summarizes life cycle and natural history data on a clear wing ithoreiine Hymenitis nero (Hewitson) (Nymphalidae: Ithomiinae) in Costa Rica. Similar studies of several other sympatric ithomiines have either been completed (Young, in prep.) or begun, as a preliminary step towards understanding the local patterns of diversity of this family in selected tropical plant communities.

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