In vitro plant growth promoter assay of actinobacteria potential for tidal land farming

The use of tidal land for agricultural still faces constraints, mainly due to high iron content. Actinobacteria produce bioactive compound with many functions. The aim of this work was to assess the growth of actinobacteria at various iron concentrations and its capability as plant growth promoter. Four actinobacteria isolates (Cal31t, Dbi28t, Crc32t and Cal24h) were grown at various iron concentrations. The isolates were examined for their capability to produce IAA and fix N2 under in vitro assay. The growth of actinobacteria under stress conditions was examined by cultivating them in ISP2 medium at pH 4, 3% NaCl, 750 mg.L−1 AlCl3 and 8 concentrations of FeCl3, i.e. 0, 500, 1000, 2000, 4000, 8000, 16000, 32000 mg.L−1. Actinobacteria isolates were able to grow under iron stress condition up to 32.000 mg.L−1. Both Cal3t and Dbi28t produced higher cell biomass compared with the other two tested isolates. All isolates produced IAA when grown under iron stress condition up to 4000 mg.L−1 of FeCl3, were able to grow under N-free medium and capable to produce ammonia at various concentrations. Crc32t produced the highest number of ammonia (0,354 mg.L−1). Cal31t and Crc32t isolates have the potency as plant growth promoter in tidal land farming.

Siderophores as an iron source for Prochlorococcus in deep chlorophyll maximum layers of the oligotrophic ocean

Prochlorococcus is one of the most abundant photosynthesizing organisms in the oligotrophic oceans. Gene content variation among Prochlorococcus populations in separate ocean basins often mirrors the selective pressures imposed by the region's distinct biogeochemistry. By pairing genomic datasets with trace metal concentrations from across the global ocean, we show that the genomic capacity for siderophore-mediated iron uptake is widespread in low-light adapted Prochlorococcus populations from iron-depleted regions of the oligotrophic Pacific and S. Atlantic oceans: Prochlorococcus siderophore consumers were absent in the N. Atlantic ocean (higher iron flux) but constituted up to half of all Prochlorococcus genomes from metagenomes in the N. Pacific (lower iron flux). Prochlorococcus siderophore consumers, like many other bacteria with this trait, also lack siderophore biosynthesis genes indicating that they scavenge exogenous siderophores from seawater. Statistical modeling suggests that the capacity for siderophore uptake is endemic to remote ocean regions where atmospheric iron fluxes are the smallest, particularly at deep chlorophyll maximum and primary nitrite maximum layers. We argue that abundant siderophore consumers at these two common oceanographic features could be a symptom of wider community iron stress, consistent with prior hypotheses. Our results provide a clear example of iron as a selective force driving the evolution of Prochlorococcus.

Mining Fiskeby III and Mandarin (Ottawa) Expression Profiles to Understand Iron Stress Tolerant Responses in Soybean

The soybean (Glycine max L. merr) genotype Fiskeby III is highly resistant to a multitude of abiotic stresses, including iron deficiency, incurring only mild yield loss during stress conditions. Conversely, Mandarin (Ottawa) is highly susceptible to disease and suffers severe phenotypic damage and yield loss when exposed to abiotic stresses such as iron deficiency, a major challenge to soybean production in the northern Midwestern United States. Using RNA-seq, we characterize the transcriptional response to iron deficiency in both Fiskeby III and Mandarin (Ottawa) to better understand abiotic stress tolerance. Previous work by our group identified a quantitative trait locus (QTL) on chromosome 5 associated with Fiskeby III iron efficiency, indicating Fiskeby III utilizes iron deficiency stress mechanisms not previously characterized in soybean. We targeted 10 of the potential candidate genes in the Williams 82 genome sequence associated with the QTL using virus-induced gene silencing. Coupling virus-induced gene silencing with RNA-seq, we identified a single high priority candidate gene with a significant impact on iron deficiency response pathways. Characterization of the Fiskeby III responses to iron stress and the genes underlying the chromosome 5 QTL provides novel targets for improved abiotic stress tolerance in soybean.

Phosphate and iron stress control global surface ocean dissolved organic phosphorus concentrations

Dissolved organic phosphorus (DOP) has a dual role in the surface ocean as both a product of primary production and as an organic nutrient fueling primary production and nitrogen fixation, especially in oligotrophic gyres. Though poorly constrained, understanding the geographic distribution and environmental controls of surface ocean DOP concentration is critical to estimating distributions and rates of primary production and nitrogen fixation in the global ocean. Here we pair DOP concentration measurements with a metric of phosphate (PO43−) stress (P*), and satellite-based chlorophyll a concentrations and iron stress estimates to explore their relationship with upper 50 m DOP stocks. Our results show that PO43− and iron stress work together to control surface DOP concentrations at basin scales. Specifically, upper 50 m DOP stocks decrease with increasing phosphate stress, while alleviated iron stress leads to either surface DOP accumulation or loss depending on PO43− availability. Our work suggests an interdependence between DOP concentration, inorganic nutrient ratios, and iron availability, and establishes a predictive framework for DOP distributions in the global surface ocean.

Enhanced Lipid Production in Chlamydomonas reinhardtii Caused by Severe Iron Deficiency

Microalgae are used as a source of lipids for the production of biofuels. Most algae produce neutral lipids under stress conditions. Here, lipid accumulation by the unicellular alga Chlamydomonas reinhardtii was examined during cultivation under iron-limiting conditions. Severe iron stress caused the cells to accumulate a significant amount of lipid, specifically triacylglycerols (TAGs), by compromising the growth. Semi-quantitative measurements by Fourier transform infrared (FTIR) spectroscopy showed an increase in both carbohydrate and lipid content in iron-stressed C. reinhardtii cells compared to control. Analysis by flow cytometry and thin layer chromatography confirmed that severe iron deficiency-induced TAG accumulation to fourfold higher than in iron-replete control cells. This accumulation of TAGs was mostly degraded from chloroplast lipids accompanied by overexpression of diacylglycerol acyltransferase (DGAT2A) protein. Furthermore, liquid chromatography-mass spectrometry (LC-MS) analysis demonstrated significantly enhanced levels of C16:0, C18:2, and C18:3 fatty acids (FAs). These results indicate that iron stress triggers the rapid accumulation of TAGs in C. reinhardtii cells. The enhanced production of these lipids caused by the iron deficiency may contribute to the efficient production of algal biofuels if we escalate to the photobioreactor’s growth conditions.