Plant speciation in the Namib Desert: origin of a widespread derivative species from a narrow endemic

Background: Parapatric (or budding) speciation is increasingly recognized as an important phenomenon in plant evolution but its role in extreme (e.g. desert) environments is poorly documented. Aims: To test this speciation model in a hypothesized sister pair, the Southwest and North African disjunct Senecio flavus and its putative progenitor, the Namibian Desert endemic S. englerianus. Methods: Phylogenetic inferences were combined with niche divergence tests, morphometrics, and experimental genetic approaches. We also evaluated the potential role of an African Dry Corridor (ADC) in promoting the hypothesized northward expansion of S. flavus (from Namibia), using palaeodistribution models. Results: Belonging to an isolated (potentially relict) clade, the two morphologically distinct species show pronounced niche divergence in Namibia and signs of digenic epistatic hybrid incompatibility (based on F2 pollen fertility). The presence of connate fluked pappus hairs in S. flavus, likely increasing dispersal ability, is controlled by a single gene locus. Conclusions: Our results provide support for a rare example of budding speciation in which a wider ranged derivative (S. flavus) originated at the periphery of a smaller ranged progenitor (S. englerianus) in the Namib Desert region. The Southwest and North African disjunction of S. flavus could have been established by dispersal across intermediate ADC areas during periods of (Late) Pleistocene aridification.

Respiratory Strategies in Relation to Ecology and Behaviour in Three Diurnal Namib Desert Tenebrionid Beetles

The respiratory physiology of three diurnal ultraxerophilous tenebrionid beetles inhabiting either the dune slipface or gravel plain in the Namib Desert was investigated. The role of the mesothoracic spiracles and subelytral cavity in gas exchange was determined by flow-through respirometry. All three species exhibited the discontinuous gas exchange cycles with a distinct convection based flutter period and similar mass specific metabolic rates. There was variation in their respiration mechanics that related to the ecology of the species. The largest beetle species, Onymacris plana, living on the dune slipface, has a leaky subelytral cavity and used all its spiracles for gas exchange. Thus, it could use evaporative cooling from its respiratory surface. This species is a fog harvester as well as able to replenish water through metabolising fats while running rapidly. The two smaller species inhabiting the gravel plains, Metriopus depressus and Zophosis amabilis, used the mesothoracic spiracles almost exclusively for gas exchange as well as increasing the proportional length of the flutter period to reduce respiratory water loss. Neither species have been reported to drink water droplets, and thus conserving respiratory water would allow them to be active longer.

Climate change effects on desert ecosystems: A case study on the keystone species of the Namib Desert Welwitschia mirabilis

Deserts have been predicted to be one of the most responsive ecosystems to global climate change. In this study, we examine the spatial and demographic response of a keystone endemic plant of the Namib Desert (Welwitschia mirabilis), for which displacement and reduction of suitable climate has been foreseen under future conditions. The main aim is to assess the association between ongoing climate change and geographical patterns of welwitschia health, reproductive status, and size. We collected data on welwitschia distribution, health condition, reproductive status, and plant size in northern Namibia. We used ecological niche models to predict the expected geographic shift of suitability under climate change scenarios. For each variable, we compared our field measurements with the expected ongoing change in climate suitability. Finally, we tested the presence of simple geographical gradients in the observed patterns. The historically realized thermal niche of welwitschia will be almost completely unavailable in the next 30 years in northern Namibia. Expected reductions of climatic suitability in our study sites were strongly associated with indicators of negative population conditions, namely lower plant health, reduced recruitment and increased adult mortality. Population condition does not follow simple latitudinal or altitudinal gradients. The observed pattern of population traits is consistent with climate change trends and projections. This makes welwitschia a suitable bioindicator (i.e. a ‘sentinel’) for climate change effect in the Namib Desert ecosystems. Our spatially explicit approach, combining suitability modeling with geographic combinations of population conditions measured in the field, could be extensively adopted to identify sentinel species, and detect population responses to climate change in other regions and ecosystems.

Dryland dunes and other dryland environmental archives as proxies for Late Quaternary stratigraphy and environmental and climate change in southern Africa

The Namib Desert and the Kalahari constitute the drylands of southern Africa, with the current relatively humid portions of the latter having experienced periodically drier conditions during the Late Quaternary. This study explores the range of dryland archives and proxies available for the past ~190 ka. These include classic dryland geomorphological proxies, such as sand dunes, as well as water-lain sediments within former lakes and ephemeral fluvial systems, lake shorelines, sand ramps, water-lain calcrete and tufa sediments at the interface of surface hydrological and hydrogeological, speleothems and groundwater hydrogeological records, and hyrax middens. Palaeoenvironmental evidence can also be contained within geoarchaeological archives in caves, overhangs and rockshelters. This integration of records is undertaken with the aim of identifying a (or a number of) terrestrial regional chronostratigraphic framework(s) for this time period within southern Africa, because this is missing from the Quaternary stratigraphy lexicon. Owing to a lack of long, near-continuous terrestrial sequences in these drylands, the correspondence between nearby terrestrial records are explored as a basis for parasequences to build this chronostratigraphy. Recognising the modern climatological diversity across the subcontinent, four broad spatial subdivisions are used to explore potential sub-regional parasequences, which capture current climatic gradients, including the hyper-arid west coast and the decrease in aridity from the southwest Kalahari toward the north and east. These are the Namib Desert, the northern Kalahari, the southern Kalahari and the eastern fringes of the southern Kalahari. Terrestrial chronostratigraphies must start from premise that climate-driven environmental shifts may have occurred independently to those in other terrestrial locations and may be diachronous compared to the marine oxygen isotope stratigraphy (MIS), which serves as a global-scale master climatostratigraphy relating to global ice volume. The fragmented nature of preserved evidence means that we are still some way from producing unambiguous parasequences. There is however, a rich record to consider, compile and compare, within which seven broad wetter intervals are identified, with breaks between these inferred to be relatively drier, and some also have proxy evidence for drying. The onset and cessation of these wetter intervals does not align with MIS: they occur with greater frequency, but not with regular periodicity. Precession-paced insolation forcing is often invoked as a key control on southern African climate, but this does not explain the pacing of all of the identified events. Overall, the pattern is complex with some corresponding wetter intervals across space and others with opposing west-east trends. The evidence for drying over the past 10 ka is pronounced in the west (Namib Desert), with ephemerally wet conditions in the south (southern Kalahari). The patterns identified here provide a framework to be scrutinised and to inspire refinements to proposed terrestrial chronostratigraphies for southern Africa. Considering changes across this large geographic area also highlights the complexity in environmental responses across space as we continue to test a range of hypotheses about the nature of climatic forcing in this region.

Genomic Characterization of a Prophage, Smhb1, That Infects Salinivibrio kushneri BNH Isolated from a Namib Desert Saline Spring

Recent years have seen the classification and reclassification of many viruses related to the model enterobacterial phage P2. Here, we report the identification of a prophage (Smhb1) that infects Salinivibrio kushneri BNH isolated from a Namib Desert salt pan (playa). Analysis of the genome revealed that it showed the greatest similarity to P2-like phages that infect Vibrio species and showed no relation to any of the previously described Salinivibrio-infecting phages. Despite being distantly related to these Vibrio infecting phages and sharing the same modular gene arrangement as seen in most P2-like viruses, the nucleotide identity to its closest relatives suggest that, for now, Smhb1 is the lone member of the Peduovirus genus Playavirus. Although host range testing was not extensive and no secondary host could be identified for Smhb1, genomic evidence suggests that the phage is capable of infecting other Salinivibrio species, including Salinivibrio proteolyticus DV isolated from the same playa. Taken together, the analysis presented here demonstrates how adaptable the P2 phage model can be.

Long-Term Population Dynamics of Namib Desert Tenebrionid Beetles Reveal Complex Relationships to Pulse-Reserve Conditions

Noy-Meir’s paradigm concerning desert populations being predictably tied to unpredictable productivity pulses was tested by examining abundance trends of 26 species of flightless detritivorous tenebrionid beetles (Coleoptera, Tenebrionidae) in the hyper-arid Namib Desert (MAP = 25 mm). Over 45 years, tenebrionids were continuously pitfall trapped on a gravel plain. Species were categorised according to how their populations increased after 22 effective rainfall events (>11 mm in a week), and declined with decreasing detritus reserves (97.7–0.2 g m−2), while sustained by nonrainfall moisture. Six patterns of population variation were recognised: (a) increases triggered by effective summer rainfalls, tracking detritus over time (five species, 41% abundance); (b) irrupting upon summer rainfalls, crashing a year later (three, 18%); (c) increasing gradually after series of heavy (>40 mm) rainfall years, declining over the next decade (eight, 15%); (d) triggered by winter rainfall, population fluctuating moderately (two, 20%); (e) increasing during dry years, declining during wet (one, 0.4%); (f) erratic range expansions following heavy rain (seven, 5%). All species experienced population bottlenecks during a decade of scant reserves, followed by the community cycling back to its earlier composition after 30 years. By responding selectively to alternative configurations of resources, Namib tenebrionids showed temporal patterns and magnitudes of population fluctuation more diverse than predicted by Noy-Meir’s original model, underpinning high species diversity.

A sedimentological record of fluvial-aeolian interactions and climate variability in the hyperarid northern Namib Desert, Namibia

The aeolian regime of the 100 km wide, hyperarid Namib Desert has been sporadically punctuated by the deposition of fluvial sediments generated during periods of higher humidity either further inland or well within the desert from Late Oligocene to Late Holocene. Four new Late Cenozoic formations are described from the northern Skeleton Coast and compared with formations further south: the Klein Nadas, Nadas (gravels, sands), Vulture’s Nest (silts) and Uniab Boulder Formations. The Klein Nadas Formation is a trimodal mass-flow fan consisting of thousands of huge, remobilised, end-Carboniferous Dwyka glacial boulders, many >3 m in length, set in an abundant, K-feldspar-rich and sandy matrix of fine gravel. Deluge rains over the smallest catchments deep within the northern Namib were the driving agent for the Klein Nadas Fan, the termination of which, with its contained boulders, rests on the coastal salt pans. These rains also resulted in catastrophic mass flows in several of the other northern Namib rivers. The Uniab Boulder Formation, being one, consists only of huge free-standing boulders. Gravelly fluvial deposition took place during global interglacial and glacial events. The Skeleton Coast Erg and other smaller dune trains blocked the rivers at times. The low-energy, thinly bedded silt deposits of the central and northern Namib are quite distinctive from the sands and gravels of older deposits. Their intermittent deposition is illustrated by bioturbation and pedogenesis of individual layers. Published offshore proxy climatological data (pollens, upwelling, wind, sea surface temperatures) point to expansion of the winter-rainfall regime of the southern Cape into southwestern Angola during strong glacial periods between the Upper Pleistocene and Holocene. In contrast to deposition initiated by short summer thunder storms, we contend that the silt successions are river-end accumulations within which each layer was deposited by runoff from comparatively gentle winter rains that lasted several days.