Machine Learning Techniques Disclose the Combined Effect of Fermentation Conditions on Yeast Mixed-Culture Dynamics and Wine Quality

The use of yeast starter cultures consisting of a blend of Saccharomyces cerevisiae and non-Saccharomyces yeasts has increased in recent years as a mean to address consumers’ demands for diversified wines. However, this strategy is currently limited by the lack of a comprehensive knowledge regarding the factors that determine the balance between the yeast-yeast interactions and their responses triggered in complex environments. Our previous studies demonstrated that the strain Hanseniaspora guilliermondii UTAD222 has potential to be used as an adjunct of S. cerevisiae in the wine industry due to its positive impact on the fruity and floral character of wines. To rationalize the use of this yeast consortium, this study aims to understand the influence of production factors such as sugar and nitrogen levels, fermentation temperature, and the level of co-inoculation of H. guilliermondii UTAD222 in shaping fermentation and wine composition. For that purpose, a Central Composite experimental Design was applied to investigate the combined effects of the four factors on fermentation parameters and metabolites produced. The patterns of variation of the response variables were analyzed using machine learning methods, to describe their clustered behavior and model the evolution of each cluster depending on the experimental conditions. The innovative data analysis methodology adopted goes beyond the traditional univariate approach, being able to incorporate the modularity, heterogeneity, and hierarchy inherent to metabolic systems. In this line, this study provides preliminary data and insights, enabling the development of innovative strategies to increase the aromatic and fermentative potential of H. guilliermondii UTAD222 by modulating temperature and the availability of nitrogen and/or sugars in the medium. Furthermore, the strategy followed gathered knowledge to guide the rational development of mixed blends that can be used to obtain a particular wine style, as a function of fermentation conditions.

Evolution of floral characters and biogeography of Heloniadeae (Melanthiaceae): an example of breeding system shifts with inflorescence change

Heloniadeae (Melanthiaceae) presents an East Asia–North America disjunct distribution. Different molecular and morphological data nevertheless support the tribe as a monophyletic group. However, their phylogenetic relationships and biogeographic history, together with the character evolution, are not clear. Therefore, we constructed a Bayesian phylogenetic tree for Heloniadeae using cpDNA and inferred the historical biogeography and floral character evolution. The results revealed that Heloniadeae was distributed in high-latitudes of East Asia and North America, originating since 22.2 mya. The East Asia clade migrated into southwest China, and subsequently colonized the Korean Peninsula, Taiwan, the Ryukyus, and spread northward to Japan and southern Sakhalin. The evolution of the inflorescence and number of flowers were phylogenetically conserved, associated with the historical biogeography of Heloniadeae. The inflorescences transferred from raceme to sub-umbel, and the number of flowers decreased during the dispersal process, which may be accompanied by changes in the breeding system. Besides, the anthesis period was more affected by the habitat environment than phylogenetic constraints. The flowering temperature of was below 20 °C in most species, except H. kawanoi. Such a low temperature might not be conductive to pollinator activities, but it could be compensated by sustaining seed production with long-lasting flowers.

Influence of Skin-Contact Treatment on Aroma Profile of Malvasia Aromatica Wines in D.O. “Vinos de Madrid”

The effects of prefermentative cold skin-contact technique using Malvasia aromatica were studied as a first step to adapt to the climate change related effects in order to intensify the aroma potential of white wines of the D.O. “Vinos de Madrid” keeping the organoleptic characteristics of the region. Major volatile compounds were extracted by liquid–liquid extraction and quantified by GC-FID. Minor volatile compounds were determined by HS-SPME/GC–MS. Sensory analysis were also carried out to describe and quantify attributes of the wines. A total of 37 components were identified and quantified. Volatile components showed mixed behavior depending on the skin-contact time. Skin-contact for longer helps to enhance the floral character provided by some compounds contained in the skin, especially linalool and 2-phenyl etanol and were impact odorants of Malvasia aromatica wine based on odor activity values (OAVs).

Influence of Different Vinification Techniques on Volatile Compounds and the Aromatic Profile of Palomino Fino Wines

The aim of this study was to evaluate the influence of vinification techniques on volatile compounds and sensory profiles in young Palomino fino white wines. Four winemaking techniques (pellicular maceration, supra-extraction and use of commercial yeast strains and of β-glycosidase enzymes) were implemented to enhance the aromatic quality of wines elaborated from this neutral variety of grape. Volatile compound content, aromatic profile (OAVs) and sensorial analysis were determined. The results showed that all the vinification techniques studied led to an increase in volatile compounds compared to the control wine. Likewise, an influence of the vineyard and must extraction method on these compounds was observed. However, the greatest changes in aroma activity and sensory profile were a result of the pellicular maceration and supra-extraction techniques. The latter was differentiated by the highest content of terpenes and, consequently, the highest odour activity values of floral series. In addition, the supra-extraction was a very selective technique since it extracted terpenes and aromatic precursors, but not the acids responsible for the fatty characteristic, such as octanoic acid. In terms of sensory profile, the supra-extraction technique improved the intensity of the Palomino fino white wine and its aromatic quality with a previously not-determined floral character.

Pollinator-dependent evolution of floral trait combinations in an orchid herb

Aims As one of the most important agents driving floral evolution, pollinators shape the diversity of flowers in angiosperms. However, most previous studies have only quantified pollinators driving the evolution of a single floral trait, and experimental estimates of the potential role of pollinators in shaping the evolution of floral trait associations are relatively rare. Methods We experimentally identified and estimated the pollinator-mediated directional and correlational selection on single floral traits and trait combinations across 2 years in an orchid species, Spiranthes sinensis. Important Findings Pollinators mediated directional selection for an earlier flowering start date and larger corolla size. Pollinators mediated positive correlational selection on the combinations of floral display traits and negative correlational selection on the combinations of flowering phenology and floral display traits. In addition, the strength of selection differed over time. Our results highlight the potential role of pollinators in driving the evolution of floral trait combinations and suggest that it is necessary to consider floral character functional associations when seeking to understand and predict the evolutionary trajectory of flowers in angiosperms.

Phylogeny and Floral Character Evolution of Mentzelia Section Bicuspidaria (Loasaceae)

Abstract—Mentzelia section Bicuspidaria (Loasaceae) is a monophyletic group of desert ephemerals that inhabit the complex, heterogeneous landscapes of the southwestern United States and northwestern Mexico. To investigate species circumscriptions and evolutionary relationships in M. sect. Bicuspidaria, we employed phylogeny reconstructions based on DNA sequences from the plastid trnL-trnF, trnS-trnfM, ndhF-rpl32, and rpl32-trnL regions and the nuclear ribosomal ITS and ETS regions. Due to evidence of discordant relationships reconstructed from the plastid and nuclear partitions, we used coalescent-based methods in addition to concatenated data sets to estimate the species tree. Maximum likelihood reconstructions based on the combined plastid and nuclear data and coalescent-based reconstructions inferred congruent, fully-resolved species-level phylogenies of M. sect. Bicuspidaria. A monophyletic M. sect. Bicuspidaria was composed of two main clades, which corresponded to a clade of species endemic to the United States composed of M. reflexa, M. tricuspis, and M. tridentata that was sister to a clade of species at least partially distributed in Mexico, composed of M. hirsutissima and M. involucrata. Despite the unusual floral morphology of M. reflexa, molecular reconstructions placed M. reflexa sister to M. tridentata. All species of M. sect. Bicuspidaria were monophyletic, except for M. hirsutissima, which was composed of two distinct lineages and paraphyletic with respect to M. involucrata. The northern clade of M. hirsutissima from California and Baja California was sister to M. involucrata, and both, in turn, were sister to a geographically disjunct southern clade of M. hirsutissima from Baja California Sur and Cedros Island. These phylogeny reconstructions provide evidence for the inclusion of five species in M. sect. Bicuspidaria and have uncovered cryptic diversity that has been largely unrecognized. Character state reconstructions based on the phylogeny of M. sect. Bicuspidaria suggest innovative and, at times, homoplasious floral evolution.

Cheniella gen. nov. (Leguminosae: Cercidoideae) from southern China, Indochina and Malesia

For much of the last thirty years, the caesalpinioid genus Bauhinia has been recognised by numerous authors as a broadly circumscribed, ecologically, morphologically and palynologically diverse pantropical taxon, comprising several subgenera. One of these, Bauhinia subg. Phanera has recently been reinstated at generic rank based on a synthesis of morphological and molecular data. Nevertheless, there remains considerable diversity within Phanera. Following a review of palynological and molecular studies of Phanera in conjunction with a careful re-examination of the morphological heterogeneity within the genus, we have found strong evidence that the species of Phanera subsect. Corymbosae are a natural group that warrant generic status. We describe here the genus Cheniella R.Clark & Mackinder gen. nov. to accommodate them. It comprises 10 species and 3 subspecies, one newly described here. Generic characters include leaves that are simple and emarginate or bilobed; flowers with elongate hypanthia which are as long as or much longer than the sepals; pods that are glabrous, compressed, oblong, indehiscent or tardily dehiscent; and with numerous seeds, the seeds bearing an unusually long funicle extending most of the way around their circumference. A further distinctive floral character was found to be a fleshy disc on which the staminodes are mounted. An analysis carried out for this study reveals Cheniella to be characterised by a pollen type that is unique to the genus and previously unknown in the Leguminosae. Species diversity is richest in southern China, the full distribution extending westward to India and south- and eastward through Indochina into Malesia.

Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance

ABSTRACTPhylogenetic analyses of trait evolution can provide insight into the evolutionary processes that initiate and drive phenotypic diversification. However, recent phylogenomic studies have revealed extensive gene tree-species tree discordance, which can lead to incorrect inferences of trait evolution if only a single species tree is used for analysis. This phenomenon—dubbed “hemiplasy”—is particularly important to consider during analyses of character evolution in rapidly radiating groups, where discordance is widespread. Here we generate whole-transcriptome data for a phylogenetic analysis of 14 species in the plant genus Jaltomata (the sister clade to Solanum), which has experienced rapid, recent trait evolution, including in fruit and nectar color, and flower size and shape. Consistent with other radiations, we find evidence for rampant gene tree discordance due to incomplete lineage sorting (ILS) and several introgression events among the well-supported subclades. Since both ILS and introgression increase the probability of hemiplasy, we perform several analyses that take discordance into account while identifying genes that might contribute to phenotypic evolution. Despite discordance, the history of fruit color evolution in Jaltomata can be inferred with high confidence, and we find evidence of de novo adaptive evolution at individual genes associated with fruit color variation. In contrast, hemiplasy appears to strongly affect inferences about floral character transitions in Jaltomata, and we identify candidate loci that could arise either from multiple lineage-specific substitutions or standing ancestral polymorphisms. Our analysis provides a generalizable example of how to manage discordance when identifying loci associated with trait evolution in a radiating lineage.

Measuring relative flower size in Anthurium (Araceae) as a continuous quantitative character

Relative flower size (RFS) was studied quantitatively in natural populations of Anthurium erskinei (one population) and A. talmonii (two populations) to investigate its potential as a taxonomic descriptor. RFS is defined as the ratio of spadix diameter and transverse floral width in the same region of the spadix. Variation was examined within and between inflorescences, populations and species. Within a single spadix, RFS may vary significantly between basal and upper spadix zones but usually not between basal and middle zones. Within populations, RFS does not differ significantly between spadix zones. Log-transformed RFS values showed significant inter-population differences. In nested ANOVA, between-species variance accounted for >90% of total variance. In A. talmonii between-population within-species variance amounted to >78% of total variance (mean RFS values), and within-spadix-zone within-spadix variance accounted for >31% of total variance (individual values). Bootstrap sampling showed that five pairs of flower and spadix diameter measurements per spadix would provide an adequate estimate of mean RFS for each population. The study suggests that RFS can be a useful quantitative taxonomic floral character for comparing species and populations in the genus Anthurium.

Optimizing the Operation of Maceration to Obtain Quality White Wines

This study monitors the physico-chemical properties of wines from Dragasani under the influence of pectolytic enzymes in various temperature conditions. during maceration contact is made between the grape skins and selected the optimal time leads to wines with more pronounced floral character. The physico-chemical extraction maceration leads to a more pronounced specific compounds, the time of maceration is very important in this case. The curing time is of great importance in producing varieties Muscat Ottonel and Tămâioasă Românească primarily for successful extraction of aromatic components from grape. As noted in the literature flavored grapes contain large amounts of terpene compounds are in free form or bound. To optimize the technological process is able to extract these compounds and to achieve a harmonious and balanced wine. The variants considered in the study presents the results of physico-chemical and aromatic wines obtained from the Muscat Ottonel and Tămâioasă Românească, which took into consideration both during maceration and the use of selected yeasts and enzymes, which form the basis for the selection of the optimal procedure for obtaining aromatic white wines in Dragasani Vineyard.