Assessment of woody plant species composition in secondary deciduous forests of Odisha, India

Plant species composition according to their functional types, distribution pattern are crucial for biodiversity conservation in tropical deciduous forest. The study assessed the woody plant species diversity, stand structure and population density in the secondary deciduous forest of Chandaka wildlife sanctuary, Odisha, India. A total of 70 species belonging to 63 genera and families were documented in this study.The stem density was found to be 1080 stems/ha with reverse J-shaped population structure indicating good regeneration potential of the forests. Shannon diversity Index varied from 0 to 2.31 whereas Simpson's index varied from 0 to 0.85. The correlation study between Importance Value Index and basal area were significant (p=40.63). The present study would be helpful for conservation and management of biodiversity in secondary dry deciduous forests of Chandaka Wildlife Sanctury in particular and tropical dry forests in general.

qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)

Background Affordable high-throughput DNA and RNA sequencing technologies are allowing genomic analysis of plant and animal populations and as a result empowering new systems genetics approaches to study complex traits. The availability of intuitive tools to browse and analyze the resulting large-scale genetic and genomic datasets remain a significant challenge. Furthermore, these integrative genomics approaches require innovative methods to dissect the flow and interconnectedness of biological information underlying complex trait variation. The Plant Genome Integrative Explorer (PlantGenIE.org) is a multi-species database and domain that houses online tools for model and woody plant species including Eucalyptus. Since the Eucalyptus Genome Integrative Explorer (EucGenIE) is integrated within PlantGenIE, it shares genome and expression analysis tools previously implemented within the various subdomains (ConGenIE, PopGenIE and AtGenIE). Despite the success in setting up integrative genomics databases, online tools for systems genetics modelling and high-resolution dissection of complex trait variation in plant populations have been lacking. Results We have developed qtlXplorer (https://eucgenie.org/QTLXplorer) for visualizing and exploring systems genetics data from genome-wide association studies including quantitative trait loci (QTLs) and expression-based QTL (eQTL) associations. This module allows users to, for example, find co-located QTLs and eQTLs using an interactive version of Circos, or explore underlying genes using JBrowse. It provides users with a means to build systems genetics models and generate hypotheses from large-scale population genomics data. We also substantially upgraded the EucGenIE resource and show how it enables users to combine genomics and systems genetics approaches to discover candidate genes involved in biotic stress responses and wood formation by focusing on two multigene families, laccases and peroxidases. Conclusions qtlXplorer adds a new dimension, population genomics, to the EucGenIE and PlantGenIE environment. The resource will be of interest to researchers and molecular breeders working in Eucalyptus and other woody plant species. It provides an example of how systems genetics data can be integrated with functional genetics data to provide biological insight and formulate hypotheses. Importantly, integration within PlantGenIE enables novel comparative genomics analyses to be performed from population-scale data.

The Role of Woody Plant Functional Traits for Sustainable Soil Management in the Agroforestry System of Ethiopia

A woody plant functional trait that directly affects its fitness and environment is decisive to ensure the success of an Agroforestry practice. Hence, recognizing the woody plant functional traits is very important to boost and sustain the productivity of the system when different plants are sharing common resources, like in Agroforestry system. Therefore, the objective of this paper was to understand how woody plant functional traits contribute to sustainable soil management in Agroforestry system and to give the way forward in the case of Ethiopia. The contribution of woody plant species in improving soil fertility and controlling soil erosion is attributed by litter accumulation rate and the season, decomposability and nutrient content of the litter, root physical and chemical trait, and spread canopy structure functional trait. However, spread canopy structure functional trait is used in coffee based Agroforestry system, while with management in Parkland Agro forestry System. Woody species of Agroforestry system added a significant amount of soil TN, OC, Av.P, K, Na, Ca, and Mg nutrients to the soil. Woody plant species of Agroforestry system and their functional traits are very important to ensure sustainable soil management. Thus, further investigation of the woody plant functional traits especially the compatibility of trees with cops is needed to fully utilize the potential of woody species for sustainable soil management practice.

Effects of rainfall, temperature and photoperiod on the phenology of ephemeral resources for selected bushveld woody plant species in southern Africa

Variability of ephemeral resources provided by woody plants is related to fluctuating environmental conditions, specifically the predominant climate variables temperature and rainfall. Photoperiod has less impact but also plays a role in the onset of resource pulses. In the seasonally affected bushveld of southern Africa, declining resources could have dire consequences to various animals that depend on these resources. Understanding the impact that rainfall, temperature and photoperiod has on woody plant resources allows managers of natural areas to plan for times when resources are scarce. Using a series of General Linear Models, this baseline study investigates the effects that these variables have on flower production, numbers of new fruit/pods and numbers of new leaves for 113 tagged trees from 26 woody plant species. Leads, lags and coincidental relationships observed between environmental predictor and phenological response variables were explored using time-series cross-correlations and concomitant correlograms. Model results indicated that temperature was the predominant indicator for flowering, with initial flowering starting when temperatures increase in September. A significant lead was observed between flowering and rainfall, suggesting that flower numbers increase approximately one month before rainfall increases. Temperature had the biggest effect on the number of species with new fruits and pods. Significant lags were observed between new fruits and pods and all environmental variables investigated, indicating that these resources depend on rainfall, temperature and photoperiod to reach their full potential. Photoperiod, temperature and the interaction between these variables had a noticeable effect on the number of species with new leaves. Peaks in species with new leaves coincide with peaks in rainfall, temperature and photoperiod. No leading or lagging indicators were observed between new leaves and the environmental variables investigated. In areas containing wildlife populations, recommendations are to undertake regular monitoring of climatic variables investigated, and the ephemeral resources on woody plant species.