High throughput phenotyping of cross-sectional morphology to assess stalk lodging resistance

Background Stalk lodging (mechanical failure of plant stems during windstorms) leads to global yield losses in cereal crops estimated to range from 5% to 25% annually. The cross-sectional morphology of plant stalks is a key determinant of stalk lodging resistance. However, previously developed techniques for quantifying cross-sectional morphology of plant stalks are relatively low-throughput, expensive and often require specialized equipment and expertise. There is need for a simple and cost-effective technique to quantify plant traits related to stalk lodging resistance in a high-throughput manner. Results A new phenotyping methodology was developed and applied to a range of plant samples including, maize (Zea mays), sorghum (Sorghum bicolor), wheat (Triticum aestivum), poison hemlock (Conium maculatum), and Arabidopsis (Arabis thaliana). The major diameter, minor diameter, rind thickness and number of vascular bundles were quantified for each of these plant types. Linear correlation analyses demonstrated strong agreement between the newly developed method and more time-consuming manual techniques (R2 > 0.9). In addition, the new method was used to generate several specimen-specific finite element models of plant stalks. All the models compiled without issue and were successfully imported into finite element software for analysis. All the models demonstrated reasonable and stable solutions when subjected to realistic applied loads. Conclusions A rapid, low-cost, and user-friendly phenotyping methodology was developed to quantify two-dimensional plant cross-sections. The methodology offers reduced sample preparation time and cost as compared to previously developed techniques. The new methodology employs a stereoscope and a semi-automated image processing algorithm. The algorithm can be used to produce specimen-specific, dimensionally accurate computational models (including finite element models) of plant stalks.

Identification of Quantitative Trait Loci for Related Traits of Stalk Lodging Resistance Using Genome-wide Association Studies in Maize (Zea mays L.)

Background: Stalk lodging is one of the main factors affecting maize (Zea mays L.) yield and limiting mechanized harvesting. Developing maize varieties with high stalk lodging resistance requires exploring the genetic basis of lodging resistance-associated agronomic traits. Stalk strength is an important indicator to evaluate maize lodging and can be evaluated by measuring stalk rind penetrometer resistance (RPR) and stalk buckling strength (SBS). And morphological traits of the stalk for the third internodes length (TIL), fourth internode length (FIL), third internode diameter (TID), and the fourth internode diameter (FID) traits are associated with stalk lodging resistance.Results: In this study, 248 genome-wide association study (GWAS) panel with 83,057 single nucleotide polymorphisms (SNPs) were used to detect the quantitative trait loci (QTLs) for six stalk lodging resistance-related traits. The heritability of all traits ranged from 0.59 to 0.72 in the association mapping panel. A total of 85 significant SNPs were identified for the association mapping panel using best linear unbiased prediction (BLUP) values of all traits. Additionally, five candidate genes were associated with stalk strength traits, which were either directly or indirectly associated with cell wall components. Conclusions: These findings contribute to our understanding of the genetic basis of maize stalk lodging and provide valuable theoretical guidance for lodging resistance in maize breeding in the future.

Physiological Influence of Stalk Rot on Maize Lodging after Physiological Maturity

The stalk lodging caused by stalk rot after physiological maturity (PM) is a major factor restricting further development of mechanical grain harvesting in China. The physiological mechanism of stalk rot on maize stalk lodging after PM is not clear. This study, based on investigating stalk rot under natural field conditions, demonstrated the relation between stalk rot caused by Fusarium spp. and lodging of 35 maize cultivars after PM. In addition, three widely-planted maize cultivars were inoculated with Fusarium spp. at PM to analyze the pathogen of stalk rot causing lodging, by measuring the infection process, carbohydrate contents, and mechanical strength of stalks. Stalk lodging increased by 0.11–0.32% for each 1% incidence of stalk rot. The stalk rot pathogen infected stalks from the pith to the rind. At the level of longitudinal section, the stalk rot pathogen spread from the inoculation internode upwardly and downwardly. These infections gradually increased with the days after PM. Inoculated plants had decreased soluble sugar content; however, cellulose and lignin contained in the inoculated plants were both higher than that in the non-inoculated treatment. Crushing strength was significantly and positively correlated with percentage of soluble sugar. This indicated that the reduction of soluble sugar content during the natural senescence of maize stalk after PM was an important factor for the decrease of stalk strength and the increase of stalk lodging. The occurrence of stalk rot accelerated the decomposition of soluble sugar, which accelerated the decrease of stalk strength and greatly increased risk of stalk lodging.

Cross-Sectional Geometry Predicts Failure Location in Maize Stalks

Background: Stalk lodging (breaking of agricultural plant stalks prior to harvest) is a multi-billion dollar a year problem. Stalk lodging occurs when high winds induce bending moments in the stalk which exceed the bending strength of the plant. Previous biomechanical models of plant stalks have investigated the effect of cross-sectional morphology on stalk lodging resistance (e.g., diameter and rind thickness). However, it is unclear if the location of stalk failure along the length of stem is determined by morphological or compositional factors. It is also unclear if the crops are structurally optimized, i.e., if the plants allocate structural biomass to create uniform and minimal bending stresses in the plant tissues. The purpose of this paper is twofold: (1) to investigate the relationship between bending stress and failure location of maize stalks, and (2) to investigate the potential of phenotyping for internode-level bending stresses to assess lodging resistance. Results: 868 maize specimens representing 16 maize hybrids were successfully tested in bending to failure. Internode morphology was measured, and bending stresses were calculated. It was found that bending stress is highly and positively associated with failure location. A user-friendly computational tool is presented to help plant breeders in phenotyping for internode-level bending stress. Phenotyping for internode-level bending stresses could potentially be used to breed for more biomechanically optimal stalks that are resistant to stalk lodging. Conclusions: Internode-level bending stress plays a potentially critical role in the structural integrity of plant stems. Equations and tools provided herein enable researchers to account for this phenotype, which has the potential to increase the bending strength of plants without increasing overall structural biomass.

The Overlooked Biomechanical Role of the Clasping Leaf Sheath in Wheat Stalk Lodging

The biomechanical role of the clasping leaf sheath in stalk lodging events has been historically understudied. Results from this study indicate that in some instances the leaf sheath plays an even larger role in reinforcing wheat against stalk lodging than the stem itself. Interestingly, it appears the leaf sheath does not resist bending loads by merely adding more material to the stalk (i.e., increasing the effective diameter). The radial preload of the leaf sheath on the stem, the friction between the sheath and the stem and several other complex biomechanical factors may contribute to increasing the stalk bending strength and stalk flexural rigidity of wheat. Results demonstrated that removal of the leaf sheath induces alternate failure patterns in wheat stalks. In summary the biomechanical role of the leaf sheath is complex and has yet to be fully elucidated. Many future studies are needed to develop high throughput phenotyping methodologies and to determine the genetic underpinnings of the clasping leaf sheath and its relation to stalk lodging resistance. Research in this area is expected to improve the lodging resistance of wheat.

High Throughput Phenotyping of Cross-sectional Morphology to Assess Stalk Lodging Resistance

Background Stalk lodging (mechanical failure of plant stems during windstorms) leads to global yield losses in cereal crops estimated to range from 5% - 25% annually. The cross-sectional morphology of plant stalks is a key determinant of stalk lodging resistance. However, previously developed techniques for quantifying cross-sectional morphology of plant stalks are relatively low-throughput, expensive and often require specialized equipment and expertise. There is need for a simple and cost-effective technique to quantify plant traits related to stalk lodging resistance in a high-throughput manner.Results A new phenotyping methodology was developed and applied to a range of plant samples including, maize (Zea mays), sorghum (Sorghum bicolor), wheat (Triticum aestivum), poison hemlock (Conium maculatum), and Arabidopsis (Arabis thaliana). The major diameter, minor diameter, rind thickness and number of vascular bundles were quantified for each of these plant types. Linear correlation analyses demonstrated strong agreement between the newly developed method and more time-consuming manual techniques (R2>0.9). In addition, the new method was used to generate several specimen-specific finite element models of plant stalks. All the models compiled without issue and were successfully imported into finite element software for analysis. All the models demonstrated reasonable and stable solutions when subjected to realistic applied loads.Conclusions A rapid, low-cost, and user-friendly phenotyping methodology was developed to quantify two-dimensional plant cross-sections. The methodology offers reduced sample preparation time and cost as compared to previously developed techniques. The new methodology employs a stereoscope and a semi-automated image processing algorithm. The algorithm can be used to produce specimen-specific, dimensionally accurate computational models (including finite element models) of plant stalks.

Large Deflection Model for Multiple, Inline, Interacting Cantilever Beams

Numerous natural and synthetic systems can be modeled as clusters of interacting cantilever beams. However, a closed-form mathematical model capable of representing the mechanics of multiple interacting cantilever beams undergoing large deflections has yet to be presented. In this work, a pioneering mathematical model of the force–deflection response of multiple, inline, interacting (i.e., contacting) cantilever beams is presented. The math model enables the determination of the force–deflection response of a system of interacting cantilever beams and is predicated upon the “Pseudo Rigid Body Model” concept. The model was validated through data triangulation experiments which included both physical and computational studies. An analysis of the mathematical model indicates it is most accurate with deflections less than 50 deg. In the future, the model may be used in high throughput phenotyping applications for investigating stalk lodging and estimating the flexural rigidity of crop stems. The model can also be used to gain intuition and aid in the design of synthetic systems composed of multiple cantilever beams.