Comparative Genomics Analyses Support the Reclassification of Bisgaard Taxon 40 as Mergibacter gen. nov., With Mergibacter septicus sp. nov. as Type Species: Novel Insights Into the Phylogeny and Virulence Factors of a Pasteurellaceae Family Member Associated With Mortality Events in Seabirds

The Pasteurellaceae family has been associated with fatal diseases in numerous avian species. Several new taxa within this family, including Bisgaard taxon 40, have been recently described in wild birds, but their genomic characteristics and pathogenicity are not well understood. We isolated Bisgaard taxon 40 from four species of seabirds, including one sampled during a mass, multi-species mortality event in Florida, United States. Here, we present a comprehensive phenotypic and genetic characterization of Bisgaard taxon 40 and comparative genomic analysis with reference strains from the Pasteurellaceae family, aiming at determining its phylogenetic position, antimicrobial susceptibility profile, and identifying putative virulence factors. In silico multilocus sequence-based and whole-genome-based phylogenetic analysis clustered all Bisgaard taxon 40 strains together on a distinct branch separated from the other members of the Pasteurellaceae family, indicating that Bisgaard taxon 40 could represent a new genus. These findings were further supported by protein similarity analyses using the concatenation of 31 conserved proteins and other taxonomic approaches such as the percentage of conserved protein test. Additionally, several putative virulence factors were identified, including those associated with adhesion (capsule, ompA, ompH) and colonization (exbD, fur, galU, galE, lpxA, lpxC, and kdsA) of the host and a cytolethal distending toxin (cdt), which may have played a role in disease development leading to the mortality event. Considerably low minimum inhibitory concentrations (MICs) were found for all the drugs tested, in concordance with the absence of antimicrobial resistance genes in these genomes. The novel findings of this study highlight genomic and phenotypic characteristics of this bacterium, providing insights into genome evolution and pathogenicity. We propose a reclassification of these organisms within the Pasteurellaceae family, designated as Mergibacter gen. nov., with Mergibacter septicus sp. nov. as the type species. The type strain is Mergibacter septicus A25201T (=DSM 112696).

The Importance of Including Water Temperature Simulations in a 2D Fish Habitat Model for the St. Lawrence River

Extreme climatic conditions likely caused a massive fish mortality during the summer of 2001 in the St. Lawrence River. To corroborate this hypothesis, we used a physical habitat simulation approach incorporating hydraulic and water temperature models. Spawning Habitat Suitability Indices (HSI) for common carp (Cyprinus carpio) were developed using fuzzy logic and applied to the model outputs to estimate habitat weighted usable area during the event. The results revealed that areas suitable for common carp spawning (HSI > 0.3) were severely reduced by high water temperatures, which exceeded 28 °C during the mortality event. During the mortality event, the amount of suitable habitat was reduced to <200 ha/day, representing less than 15% of the maximum potential suitable habitat in the study reach. In addition, the availability of cooler habitats that could have been used as thermal refuges was also reduced. These results indicate that the high water temperature in spawning areas and reduced accessibility to thermal refuge habitats exposed the carp to substantial physiological and environmental stress. The high water temperatures were highly detrimental to the fish and eventually led to the observed mortalities. This study demonstrates the importance of including water temperature in habitat suitability models.

Disease Outbreak in a Keystone Grazer Population Brings Hope to the Recovery of Macroalgal Forests in a Barren Dominated Island

Macroalgal forests play a key role in shallow temperate rocky reefs worldwide, supporting communities with high productivity and providing several ecosystem services. Sea urchin grazing has been increasingly influencing spatial and temporal variation in algae distributions and it has become the main cause for the loss of these habitats in many coastal areas, causing a phase shift from macroalgae habitats to barren grounds. The low productive barrens often establish as alternative stable states and only a major reduction in sea urchin density can trigger the recovery of macroalgal forests. The present study aims to assess if the 2018 disease outbreak, responsible for a strong reduction in the sea urchin Diadema africanum densities in Madeira Island, was able to trigger a reverse shift from barren grounds into macroalgae-dominated state. By assessing the diversity and abundance of benthic sessile organisms, macroinvertebrates and fishes before, during and after that particular mass mortality event, we evaluate changes in benthic assemblages and relate them to variations in grazer and herbivore densities. Our results revealed a clear shift from barren state to a macroalgae habitat, with barrens characterized by bare substrate, sessile invertebrate and Crustose Coralline Algae (CCA) disappearing after the mortality event. Overall variations in benthic assemblages was best explained by four taxa (among grazers and herbivores species). However, it was the 2018 demise of D. africanum and its density reduction that most contributed to the reverse shift from a long stable barren state to a richer benthic assemblage with higher abundance of macroalgae. Despite this recent increase in macroalgae dominated habitats, their stability and persistence in Madeira Island is fragile, since it was triggered by an unpredictable disease outbreak and depends on how D. africanum populations will recover. With no control mechanisms, local urchin populations can easily reach the tipping point needed to promote a new shift into barren states. New conservation measures and active restoration are likely required to maintain and promote the local stability of macroalgal forests.

Twenty years of drought‐mediated change in snag populations in mixed‐conifer and ponderosa pine forests in Northern Arizona

Background Snags (standing dead trees) are important biological legacies in forest systems, providing numerous resources as well as a record of recent tree mortality. From 1997 to 2017, we monitored snag populations in drought-influenced mixed-conifer and ponderosa pine (Pinus ponderosa) forests in northern Arizona. Results Snag density increased significantly in both forest types. This increase was driven largely by a pulse in snag recruitment that occurred between 2002 and 2007, following an extreme drought year in 2002, with snag recruitment returning to pre-pulse levels in subsequent time periods. Some later years during the study also were warmer and/or drier than average, but these years were not as extreme as 2002 and did not trigger the same level of snag recruitment. Snag recruitment was not equal across tree species and size classes, resulting in significant changes in species composition and size-class distributions of snag populations in both forest types. Because trees were far more abundant than snags in these forests, the effect of this mortality pulse on tree populations was far smaller than its effect on snag populations. Snag loss rates increased over time during the study, even though many snags were newly recruited. This may reflect the increasing prevalence of white fir snags and/or snags in the smaller size classes, which generally decay faster than snags of other species or larger snags. Thus, although total numbers of snags increased, many of the newly recruited snags may not persist long enough to be valuable as nesting substrates for native wildlife. Conclusions Increases in snag abundance appeared to be due to a short-term tree mortality “event” rather than a longer-term pattern of elevated tree mortality. This mortality event followed a dry and extremely warm year (2002) embedded within a longer-term megadrought. Climate models suggest that years like 2002 may occur with increasing frequency in the southwestern U.S. Such years may result in additional mortality pulses, which in turn may strongly affect trajectories in abundance, structure, and composition of snag populations. Relative effects on tree populations likely will be smaller, but, over time, also could be significant.

Host Range of Carp Edema Virus (CEV) during a Natural Mortality Event in a Minnesota Lake and Update of CEV Associated Mortality Events in the USA

Mass mortality events of common carp (Cyprinus carpio, carp) associated with carp edema virus (CEV) alone or in coinfections with koi herpesvirus (KHV), is an emerging issue. Despite recent outbreaks of CEV in wild carp populations, the host range of North American species has not been well studied. To that end, we intensively sampled carp (n = 106) and co-habiting native fish species (n = 5 species; n = 156 total fish) from a CEV-suspect mass-mortality event of carp in a small Minnesota lake (Lake Swartout). Additionally, fecal and regurgitant samples (n = 73 each) from double-crested cormorants (Phalacrocorax auritus, DCCO) were sampled to test the potential of DCCO to act as a vector for virus transmission. CEV was confirmed to be widespread in the Lake Swartout carp population during the outbreak with high viral loads and histological confirmation, suggesting that CEV was the cause of the mortality event. There were no detections of CEV in any native fish species; however, DCCO regurgitant and fecal samples were positive for CEV DNA. In addition, three CEV-positive and one CEV + KHV-positive mortality events were confirmed with no observed mortality or morbidity of non-carp species in other lakes. This study provides evidence that CEV infection and disease may be specific to carp during mortality events with mixed-species populations, identifies DCCO as a potential vector for CEV, and further expands the known range of CEV, as well as coinfections with KHV, in North America.