spatial normalization
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IEEE Access ◽  
2022 ◽  
pp. 1-1
Author(s):  
Mingle Xu ◽  
Yongchae Jeong ◽  
Dong Sun Park ◽  
Sook Yoon

Author(s):  
Teng Zhang ◽  
Yuting Li ◽  
Shuilin Zhao ◽  
Yuanfan Xu ◽  
Xiaohui Zhang ◽  
...  

Abstract Background PET imaging has been widely used in diagnosis of neurological disorders; however, its application to pediatric population is limited due to lacking pediatric age–specific PET template. This study aims to develop a pediatric age–specific PET template (PAPT) and conduct a pilot study of epileptogenic focus localization in pediatric epilepsy. Methods We recruited 130 pediatric patients with epilepsy and 102 age-matched controls who underwent 18F-FDG PET examination. High-resolution PAPT was developed by an iterative nonlinear registration-averaging optimization approach for two age ranges: 6–10 years (n = 17) and 11–18 years (n = 50), respectively. Spatial normalization to the PAPT was evaluated by registration similarities of 35 validation controls, followed by estimation of potential registration biases. In a pilot study, epileptogenic focus was localized by PAPT-based voxel-wise statistical analysis, compared with multi-disciplinary team (MDT) diagnosis, and validated by follow-up of patients who underwent epilepsy surgery. Furthermore, epileptogenic focus localization results were compared among three templates (PAPT, conventional adult template, and a previously reported pediatric linear template). Results Spatial normalization to the PAPT significantly improved registration similarities (P < 0.001), and nearly eliminated regions of potential biases (< 2% of whole brain volume). The PAPT-based epileptogenic focus localization achieved a substantial agreement with MDT diagnosis (Kappa = 0.757), significantly outperforming localization based on the adult template (Kappa = 0.496) and linear template (Kappa = 0.569) (P < 0.05). The PAPT-based localization achieved the highest detection rate (89.2%) and accuracy (80.0%). In postsurgical seizure-free patients (n = 40), the PAPT-based localization also achieved a substantial agreement with resection areas (Kappa = 0.743), and the highest detection rate (95%) and accuracy (80.0%). Conclusion The PAPT can significantly improve spatial normalization and epileptogenic focus localization in pediatric epilepsy. Future pediatric neuroimaging studies can also benefit from the unbiased spatial normalization by PAPT. Trial registration. NCT04725162: https://clinicaltrials.gov/ct2/show/NCT04725162


Author(s):  
Kent Nagumo ◽  
Kosuke Oiwa ◽  
Akio Nozawa

AbstractHuman–computer interaction (HCI) is an interaction for mutual communication between humans and computers. HCI needs to recognize the human state quantitatively and in real-time. Although it is possible to quantitatively evaluate the human condition by measuring biological signals, the challenge is that it often requires physical constraints. There is an increasing interest in a non-contact method of estimating physiological and psychological states by measuring facial skin temperature using infrared thermography. However, due to individual differences in face shape, the accuracy of physiological and psychological state estimation using facial thermal images was sometimes low. To solve this problem, we hypothesized that spatial normalization of facial thermal image (SN-FTI) could reduce the effect of individual differences in facial shape. The objective of this study is to develop a method for SN-FTI and to evaluate the effect of SN-FTI on the estimation of physiological and psychological states. First, we attempted spatial normalization using facial features. The results suggested that SN-FTI would result in the same face shape among individuals. Since there are individual differences in facial skin temperature distribution, the inter-individual correlation coefficient is suggested to be lower than the intra-individual correlation coefficient. Next, we modeled the estimated drowsiness level using SN-FTIs and compared it with Normal. The results showed that SN-FTI slightly improved the discrimination rate of drowsiness level. SN-FTIs were suggested to reduce the effect of individual differences in facial structure on the estimation of physiological and psychological states.


2021 ◽  
Author(s):  
Alexander J. Dufford ◽  
C. Alice Hahn ◽  
Hannah Peterson ◽  
Silvia Gini ◽  
Saloni Mehta ◽  
...  

AbstractIn neuroimaging, spatial normalization is an important step that maps an individual’s brain onto a template brain permitting downstream statistical analyses. Yet, in infant neuroimaging, there remain several technical challenges that have prevented the establishment of a standardized template for spatial normalization. Thus, many different approaches are used in the literature. To quantify the popularity and variability of these approaches in infant neuroimaging studies, we performed a systematic review of infant MRI studies from 2000 to 2020. Here, we present results from 833 studies meeting inclusion criteria. Studies were classified into 1) processing data in single subject space, 2) using a predefined, or “off the shelf”, template, 3) creating a study specific template or 4) using a hybrid of these methods. We found that across the studies in the systematic review, single subject space was the most used (no common space). This was the most used common space for DWI and structural MRI studies while fMRI studies preferred off the shelf atlases. We found a pattern such that more recently published studies are more commonly using off the shelf atlases. When considering special populations, preterm studies most used single subject space while, when no special populations were being analyzed, an off the shelf template was most common. The most used off the shelf templates were the UNC Infant Atlases (26.1%). Using a systematic review of infant neuroimaging studies, we highlight a lack of an established “standard” template brain in these studies.


2021 ◽  
Vol 15 ◽  
Author(s):  
Catherine A. de Planque ◽  
Henk J. M. M. Mutsaerts ◽  
Vera C. Keil ◽  
Nicole S. Erler ◽  
Marjolein H. G. Dremmen ◽  
...  

Spatial normalization is an important step for group image processing and evaluation of mean brain perfusion in anatomical regions using arterial spin labeling (ASL) MRI and is typically performed via high-resolution structural brain scans. However, structural segmentation and/or spatial normalization to standard space is complicated when gray-white matter contrast in structural images is low due to ongoing myelination in newborns and infants. This problem is of particularly clinical relevance for imaging infants with inborn or acquired disorders that impair normal brain development. We investigated whether the ASL MRI perfusion contrast is a viable alternative for spatial normalization, using a pseudo-continuous ASL acquired using a 1.5 T MRI unit (GE Healthcare). Four approaches have been compared: (1) using the structural image contrast, or perfusion contrast with (2) rigid, (3) affine, and (4) nonlinear transformations – in 16 healthy controls [median age 0.83 years, inter-quartile range (IQR) ± 0.56] and 36 trigonocephaly patients (median age 0.50 years, IQR ± 0.30) – a non-syndromic type of craniosynostosis. Performance was compared quantitatively using the real-valued Tanimoto coefficient (TC), visually by three blinded readers, and eventually by the impact on regional cerebral blood flow (CBF) values. For both patients and controls, nonlinear registration using perfusion contrast showed the highest TC, at 17.51 (CI 6.66–49.38) times more likely to have a higher rating and 17.45–18.88 ml/100 g/min higher CBF compared with the standard normalization. Using perfusion-based contrast improved spatial normalization compared with the use of structural images, significantly affected the regional CBF, and may open up new possibilities for future large pediatric ASL brain studies.


Author(s):  
Sofiane Zeghoud ◽  
Saba Ghazanfar Ali ◽  
Egemen Ertugrul ◽  
Aouaidjia Kamel ◽  
Bin Sheng ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Kazuteru Shiraishi ◽  
Andrew J. Burghardt ◽  
Makoto Osaki ◽  
Sundeep Khosla ◽  
Julio Carballido-Gamio

BackgroundBone parameters derived from HR-pQCT have been investigated on a parameter-by-parameter basis for different clinical conditions. However, little is known regarding the interrelationships of bone parameters and the spatial distribution of these interrelationships. In this work: 1) we investigate compartmental interrelationships of bone parameters; 2) assess the spatial distribution of interrelationships of bone parameters; and 3) compare interrelationships of bone parameters between postmenopausal women with and without a recent Colles’ fracture.MethodsImages from the unaffected radius in fracture cases (n=84), and from the non-dominant radius of controls (n=98) were obtained using HR-pQCT. Trabecular voxel-based maps of local bone volume fraction (L.Tb.BV/TV), homogenized volumetric bone mineral density (H.Tb.BMD), homogenized μFEA-derived strain energy density (H.Tb.SED), and homogenized inter-trabecular distances (H.Tb.1/N) were generated; as well as surface-based maps of apparent cortical bone thickness (Surf.app.Ct.Th), porosity-weighted cortical bone thickness (Surf.Ct.SIT), mean cortical BMD (Surf.Ct.BMD), and mean cortical SED (Surf.Ct.SED). Anatomical correspondences across the parametric maps in the study were established via spatial normalization to a common template. Mean values of the parametric maps before spatial normalization were used to assess compartmental Spearman’s rank partial correlations of bone parameters (e.g., between H.Tb.BMD and L.Tb.BV/TV or between Surf.Ct.BMD and Surf.app.Ct.Th). Spearman’s rank partial correlations were also assessed for each voxel and vertex of the spatially normalized parametric maps, thus generating maps of Spearman’s rank partial correlation coefficients. Correlations were performed independently within each group, and compared between groups using the Fisher’s Z transformation.ResultsAll within-group global trabecular and cortical Spearman’s rank partial correlations were significant; and the correlations of H.Tb.BMD–L.Tb.BV/TV, H.Tb.BMD–H.Tb.1/N, L.Tb.BV/TV–H.Tb.1/N, Surf.Ct.BMD–Surf.Ct.SED and Surf.Ct.SIT–Surf.Ct.SED were significantly different between controls and fracture cases. The spatial analyses revealed significant heterogeneous voxel- and surface-based correlation coefficient maps across the distal radius for both groups; and the correlation maps of H.Tb.BMD–L.Tb.BV/TV, H.Tb.BMD–H.Tb.1/N, L.Tb.BV/TV–H.Tb.1/N, H.Tb.1/N–H.Tb.SED and Surf.app.Ct.Th - Surf.Ct.SIT yielded small clusters of significant correlation differences between groups.DiscussionThe heterogeneous spatial distribution of interrelationships of bone parameters assessing density, microstructure, geometry and biomechanics, along with their global and local differences between controls and fracture cases, may help us further understand different bone mechanisms of bone fracture.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yukai Zou ◽  
Wenbin Zhu ◽  
Ho-Ching Yang ◽  
Ikbeom Jang ◽  
Nicole L. Vike ◽  
...  

AbstractHuman brains develop across the life span and largely vary in morphology. Adolescent collision-sport athletes undergo repetitive head impacts over years of practices and competitions, and therefore may exhibit a neuroanatomical trajectory different from healthy adolescents in general. However, an unbiased brain atlas targeting these individuals does not exist. Although standardized brain atlases facilitate spatial normalization and voxel-wise analysis at the group level, when the underlying neuroanatomy does not represent the study population, greater biases and errors can be introduced during spatial normalization, confounding subsequent voxel-wise analysis and statistical findings. In this work, targeting early-to-middle adolescent (EMA, ages 13–19) collision-sport athletes, we developed population-specific brain atlases that include templates (T1-weighted and diffusion tensor magnetic resonance imaging) and semantic labels (cortical and white matter parcellations). Compared to standardized adult or age-appropriate templates, our templates better characterized the neuroanatomy of the EMA collision-sport athletes, reduced biases introduced during spatial normalization, and exhibited higher sensitivity in diffusion tensor imaging analysis. In summary, these results suggest the population-specific brain atlases are more appropriate towards reproducible and meaningful statistical results, which better clarify mechanisms of traumatic brain injury and monitor brain health for EMA collision-sport athletes.


2020 ◽  
Vol 54 (6) ◽  
pp. 305-314
Author(s):  
Sungwoo Bae ◽  
Hongyoon Choi ◽  
Wonseok Whi ◽  
Jin Chul Paeng ◽  
Gi Jeong Cheon ◽  
...  

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