Embryo Rescue and Moleclar Marker-Assisted Selection of Hybrid Seedless Grape

Seedless grapes play an important role in fresh food and dry production. New varieties breeding by hybridization with seedless varieties as female parents is the most effective way to cultivate seedless varieties. However, the embryos of Seedless varieties can not develop normally, so it is difficult to obtain hybrid offspring as hybrid female parent. Moreover, grape is a perennial tree species with highly heterozygous genes, with long breeding cycle and low efficiency. In this study, embryo rescue technology was used to cultivate hybrid offspring by crossing with ‘Ruby Seedless’ as female parent and ‘Hongqitezao’ as male parent, so as to solve the problem that seedless varieties can not be female parent; and molecular technology was used to carry out assisted breeding research to solve the problems of long cycle and low efficiency. TP-M13-SSR technique was used to carry out authenticity breeding. SCAR marker SCF27-2000 was used to detect the seedless traits of hybrid plants, phenotypic traits was used to verify the results of molecular markers, and Seedless trait-related SSR markers VMC7F2, VrSD10 and P3_VvAGL11 was used to detect and verify the genotypes of individual plants with inconsistent detection results by the two methods. In this study, a total of 384 hybrid offspring were finally obtained, and the hybridization rate was 84.43%. A total of 163 fruit-bearing plants were identified, and the phenotypes of their seeds were identified. The coincidence rate of genotypic and phenotypic analyses was 93.88%. Additionally, 305 F1 plants were detected using the SCF27-2000 marker, and the abortion rate was 64.92%. We speculate that the inconsistent results were caused by parthenocarpy, SCF27 marker limitation, among other factors. Overall, this study shows that embryo rescue is an effective method for breeding seedless grape cultivars, and the application of molecular markers could facilitate the early identification of hybrid traits,and improve breeding efficiency.

Reticulate evolution in a neutral model: speciation, extinctions, and hybridizations

Evolution is usually pictured as a tree where ancient species branch into new ones and eventually disappear. In this simplified view, the balance between speciation and extinction fully determines the diversity of life. Hybridization, however, introduces another level of complexity, allowing neighboring branches of the tree to interact, mixing their genetic content. This generates further diversity leading to reticulated phylogenetic trees. In this paper we study processes of speciation, extinction and hybridization using a genetically and spatially explicit neutral model of diversification. Speciation, extinction and hybridization events are tracked throughout the evolutionary process leading to complete and exact phylogenetic trees. We found that genome size played a key role in these processes, increasing the extinction rate and decreasing the hybridization rate. In our simulations, hybridization after one speciation event occurred throughout the evolutionary process but hybridization after two speciation events was only observed during the initial radiation. Most hybridization occurred between relatively abundant species, discarding lack of sexual partners or small population sizes as potential causes. We found that hybridization occurred mostly because of opportunity (genetic similarity and spatial proximity) between recently branched species, when the number of accumulated mutations is not yet too large.

Optimal Sizing of Fuel Cell Hybrid Power Sources with Reliability Consideration

This paper addresses the issue of optimal sizing reliability applied to a fuel cell/battery hybrid system. This specific problem raises the global problem of strong coupling between hardware and control parameters. To tackle this matter, the proposed methodology uses nested optimization loops. Furthermore, to increase the optimal design relevance, a reliability assessment of the optimal sizing set is introduced. This new paradigm enables showing the early impact of the reliability criteria on design choices regarding energetic performance index. It leads to a smart design methodology permitting to avoid complexity and save computing time. It considerably helps design engineers set up the best hybridization rate and enables practicing tradeoffs, including reliability aspects in the early design stages.

Defining Species When There is Gene Flow

Whatever one’s definition of species, it is generally expected that individuals of the same species should be genetically more similar to each other than they are to individuals of another species. Here, we show that in the presence of cross-species gene flow, this expectation may be incorrect. We use the multispecies coalescent model with continuous-time migration or episodic introgression to study the impact of gene flow on genetic differences within and between species and highlight a surprising but plausible scenario in which different population sizes and asymmetrical migration rates cause a genetic sequence to be on average more closely related to a sequence from another species than to a sequence from the same species. Our results highlight the extraordinary impact that even a small amount of gene flow may have on the genetic history of the species. We suggest that contrasting long-term migration rate and short-term hybridization rate, both of which can be estimated using genetic data, may be a powerful approach to detecting the presence of reproductive barriers and to define species boundaries.[Gene flow; introgression; migration; multispecies coalescent; species concept; species delimitation.]

A sexual hybrid and autopolyploids detected in seed from crosses between Neslia paniculata and Camelina sativa (Brassicaceae)

It is important to understand the probability of hybridization and potential for introgression of transgenic crop alleles into wild populations as part of pre-release risk assessment. Here we completed bidirectional crosses between the emerging crop, camelina [Camelina sativa (L.) Crantz] and its weedy relative, ball mustard [Neslia paniculata (L.) Desv.]. Ball mustard is a self-compatible annual that produces hard ball-like seeds similar to canola or mustard seed in size and shape. A total of 1593 crosses were completed and collected with camelina as the maternal parent, while 3253 crosses were successfully collected in the reverse direction. Putatively hybrid seedlings were screened with flow cytometry and species-specific nuclear ribosomal internal transcribed spacer (ITS) markers. Three plants had DNA contents close to expectations for hybrids, but only one of these, formed on camelina, had the expected ITS markers. This hybrid exhibited low fertility, and neither self-pollination nor backcrossing produced viable progeny. The other two plants, formed on ball mustard, had high pollen and seed fertility and were identified as ball mustard neoautotetraploids. Therefore, the hybridization rate between camelina and ball mustard is relatively low at one in 20 000 ovules pollinated when camelina is the maternal parent. However, autotetraploids may form frequently in ball mustard, and tetraploid populations may exist in nature.

Characterisation of the Swarming Behavior of An. coluzzii and An. Gambiae Populations from a Hybrid Zone of Senegal.

Background Anopheles gambiae s.s. and An. coluzzii, two major malaria vectors in Africa, exist in the nature as two incipient, sympatric or allopatric species. In most of their sympatric areas, the reproductive isolation between these two distinct species is thought to be the main barrier to hybridization. However, in Senegal, barriers to the gene flow seems to be leaky in some areas with relatively higher than expected hybridization rates. Here, we characterized the swarming behavior of these two species to investigate its role in the observed high hybridization.Methods The study was carried out in the south and center of Senegal during the 2018 rainy season. Swarms were surveyed at sunset towards the lightest part of the sky, about 0.5–4 m above the ground. Once located, swarm were collected using a net. Indoor resting populations were also collected during the same period from each sentinel village by pyrethrum spray catch earlier the morning. All specimens collected were identified morphologically followed by PCR to estimate the frequency of the two species and female hybrids.Results Results showed that An. gambiae swarmed mainly over bare ground whereas An. coluzzii swarms over various objects forming a dark-light contrast with the ground. The height of swarms varied between 0.5 to 2.5 meters and the swarming duration was about 10 minutes. Start of swarming was mainly correlated with sunset and no mixed swarms were found in areas of sympatry despite the high level of hybridization rate (2.4% − 4.4%).Conclusion As found elsewhere in West Africa, swarming site segregation is an important pre-mating reproductive barrier between An. coluzzii and An. gambiae in Senegal. No link was found between swarming behavior and hybridization, but the lack of mixed swarms may be the result of low number of samples obtained in the sympatric area.

Admixture between Ancient Lineages, Selection, and the Formation of Sympatric Stickleback Species-Pairs

Ecological speciation has become a popular model for the development and maintenance of reproductive isolation in closely related sympatric pairs of species or ecotypes. An implicit assumption has been that such pairs originate (possibly with gene flow) from a recent, genetically homogeneous ancestor. However, recent genomic data have revealed that currently sympatric taxa are often a result of secondary contact between ancestrally allopatric lineages. This has sparked an interest in the importance of initial hybridization upon secondary contact, with genomic reanalysis of classic examples of ecological speciation often implicating admixture in speciation. We describe a novel occurrence of unusually well-developed reproductive isolation in a model system for ecological speciation: the three-spined stickleback (Gasterosteus aculeatus), breeding sympatrically in multiple lagoons on the Scottish island of North Uist. Using morphological data, targeted genotyping, and genome-wide single-nucleotide polymorphism data, we show that lagoon resident and anadromous ecotypes are strongly reproductively isolated with an estimated hybridization rate of only ∼1%. We use palaeoecological and genetic data to test three hypotheses to explain the existence of these species-pairs. Our results suggest that recent, purely ecological speciation from a genetically homogeneous ancestor is probably not solely responsible for the evolution of species-pairs. Instead, we reveal a complex colonization history with multiple ancestral lineages contributing to the genetic composition of species-pairs, alongside strong disruptive selection. Our results imply a role for admixture upon secondary contact and are consistent with the recent suggestion that the genomic underpinning of ecological speciation often has an older, allopatric origin.