Genome Size Evaluations in Cockroaches: New Entries

Background: Ten years ago the main Genome Size (GS) database contained records for 830 insects; although this number has now nearly doubled, 1645 (Gregory 2011 vs Gregory 2021 databases), the paucity of records highlights both the difficulty of animal field trapping and the time-consuming laboratory techniques to evaluate them. Thus, new entries are necessary to reach a satisfactory GS panorama for cockroaches. Results: We report GS values for nine cockroaches (order Blattodea, families Blattidae, Blaberidae and Ectobiidae, ex Blattelidae,), three of which are original additions to the ten already present in the GS database: the death’s head roach (Blaberus craniifer), the Surinam cockroach (Pycnoscelus surinamensis) and the Madeira cockroach (Leucophaea maderae). Three of our values confirm the existing data for the German (Blattella germanica), the oriental (Blatta orientalis) and the giant Mexican (Blabera fusca) cockroaches. Regarding the GS of the American cockroach (Periplaneta americana) the GS database contains two contrasting values (2.72 vs 3.41 pg). We suggest that the 2.72 pg value is likely to be the correct GS as it strikingly similar to our sperm DNA content evaluation (2.80 ± 0.11 pg). Finally, we suggest halving the published GS of the Argentine cockroach Blaptica dubia and the spotted cockroach (the gray cockroach) Nauphoeta cinerea as our estimates come from the evaluation of the sperm DNA content. The data already reported in the literature are based on DNA contents of neural cells (likely polyploid) obtained by grinding entire heads of animals.Conclusions: Although the paucity of the GS data does not allow firm considerations on the possible evolutionary role played by the GS in diversifying cockroach species, we offer two speculative hypotheses that need to be validated by increasing the available GS records: (i) the occurrence of a correlation between increasing 2N chromosome number and GS within the order Blattodea; and (ii) the possible occurrence of a polyploidization phenomenon doubling a basic GS of 0.58 pg of some termite families (superfamily Blattoidea, epifamily Termitoidae) up to the maximum GS value of 3.24 for the Blaberidae family within the order Blattodea (super-order Dictyoptera).

Scaling between DNA and cell size governs bacterial growth homeostasis and resource allocation

Bacteria maintain a stable cell size and a certain DNA content through proliferation as described by classic growth laws. How cells behave when this inherent scaling is broken, however, has rarely been interrogated. Here we engineered Escherichia coli cells with extremely low DNA contents using a tunable synthetic tool CRISPRori that temporarily inhibited chromosome replication initiation. A detailed mechanistic model coupling DNA replication, cell growth, and division revealed a fundamental DNA-centric growth law, which was validated by two observations. First, lineage dynamics were robust to large CRISPRori perturbations with division cycles rapidly restoring through a timer mechanism rather than the adder rule. Second, cellular growth transitioned into a linear regime at low DNA-cytoplasm ratios. Experiments and theory showed that in this regime, cellular resource was redirected to plasmid-borne gene expression. Together with the ability of CRISPRori to bi-directionally modulate plasmid copy numbers, these findings suggest a novel strategy for bio-production enhancement.

Genetic diversity and comparative study of genomic DNA extraction protocols in Tamarix L. species

The genus Tamarix consists of about 54 species that mainly grow in saline areas of deserts and semi-deserts. This genus is chemically characterized by the presence of tannins, flavonoids, anthocyanins and essential oils which interfere with the extraction of pure genomic DNA. Thus it is necessary to optimize extraction protocols to minimize the influence of these compounds to the lowest level. The present study compares the efficiency of five different approaches to extract total genomic DNA in Tamarix species, showing significant differences in the extracted DNA contents and quality,by using Kit (DNP TM Kit), CTAB DNA extraction method by Murray and Thompson, Sahu et al., Nalini et al. and Bi et al., for the extraction of DNA from Tamarix species. Our results showed significant differences in DNA contents between these five methods. The quantity and quality of extracted genomic DNA were checked by the spectrophotometer, Nano-Drop and and agarose gel electrophoresis analysis. Finally, a PCR-based method was also applied to verify the amplification efficiency for two molecular markers (ITS and ISSR).. In the present study, the genetic diversity of 96 Tamarix individuals species and 8 populations were studied using 10 ISSR markerswhile for nrDNA ITS 8 species samples were used. The method of Nalini et al., provided best results (207 ng/μL) in terms of quantity and quality ofDNA. Our results proposed that this method could be effective for plants with the same polysaccharides, proteins and polyphenols components. The advantage of this method is simple and fast as it does not involve time consuming steps such as incubation at higher temperatures, and also do not requires expensive chemicals such as proteinase K, liquid nitrogen. ,. The success of this method in obtaining high-quality genomic DNA has been demonstrated in the Tamarix species group and the reliability of this method has been discussed.

First genome size assessments for Marshallia and Balduina (Asteraceae, Helenieae) reveal significant cytotype diversity

The genus Marshallia is made up by seven to ten species of perennial herbs growing mainly in open habitats, whereas the genus Balduina is represented by three sympatric species; two perennial herbs and one annual, growing in open pine forest habitats. Both genera belong to the family Asteraceae, tribe Helenieae, and are endemic to the southeast United States, in North America. Cytogenetic studies concerning these two genera are scarce and genome size data is lacking for both. The main goals of this study were to (i) generate novel insights into the evolution of the genome size and (ii), contribute to filling existing gaps on our knowledge of the Asteraceae family from this point of view. Nuclear DNA contents range from 11.42 pg/2C in Marshallia trinervia to 31.58 pg/2C in Marshallia mohrii. The combination of genome size with chromosome data (and inferred cytotypes) suggests the existence of multiple cytotypes, and provides interesting insights into the potential impact of polyploidy in the evolution of these genera in general, and the shaping of genome size diversity, in particular.

Sex selection techniques and their implications.

Sex selection techniques provide economic benefits to dairy and beef herd management. Therefore, the development of such techniques has attracted the attention of reproductive biologists. There have been numerous studies concerning the development of sex selection techniques. As the sex of the offspring is determined by certain chromosomes, namely the X and Y chromosomes in mammals, most studies have focused on sperm sexing, attempting to separate the X and Y chromosome-bearing sperm based on differences in deoxyribonucleic acid (DNA) content, head size/volume, motility, and immunological specificity. However, most of these methods have failed to show reproducibility. Only the flow cytometric method has been confirmed to be accurate and reliable thus far. More than three decades have passed since this technique was first developed. The sexed semen produced with the method is currently commercialized and widely used for artificial insemination (AI) in cattle around the world. Recently, however, another technique based on differences in DNA contents using a fluidics device was developed by a commercial company. Studies focused on immunological approaches and the modification of sperm motility have also described the successful separation of the two types of sperm. Therefore, the present review evaluated the available sex selection techniques and their implications.

The Effectiveness of Mini Primer STR CODIS in DNA Degradation as the Effect of High-Temperature Exposure

Background. More and more today, forensic identification through deoxyribonucleic acid (DNA) examination has achieved greater recognition in supporting Indonesia’s law enforcement. Such examination is to determine the origin of a child, paternity cases, genealogical relation, or identifying unknown crime victims. However, along with the development of this DNA material examination, problems arise. DNA undergoes a degradation, commonly known as degraded DNA, which is one of the serious issues frequently encountered by forensic and DNA experts. Some forensic DNA experts take one of the alternatives to overcome this issue by implementing a mini primer set that is through a method to reduce the size of STR assays on DNA core locus examination. Methods. In this study, the writers conduct research using the mini primers of CSF1PO, FGA, and D21S11 of the molar teeth exposed to 500°C temperature for 20 and 30 minutes and 750°C for the same amount of time.Result. The findings show the DNA contents of molar teeth significantly ( p < 0.05 ) decreased as the effect of high-temperature exposure. PCR result visualization shows CSF1PO is the only locus detected with mini primer exposed to 750°C temperature for 30 minutes (the highest exposure during this research). Conclusions. This finding suggests that this locus is potential in examining identification through DNA analysis, especially on a degraded condition as the effect of high-temperature exposure. Besides, this could accelerate the identification process especially on mass disaster events or criminal cases.

Small but mighty: the causes and consequences of micronucleus rupture

Micronuclei are small DNA-containing nuclear structures that are spatially isolated from the main nucleus. They are frequently found in pathologies, including cancer. It was recently shown that these nuclear structures are not only biomarkers of disease but also play an active role in tumor biology. Many consequences of micronucleus formation on tumor biology are dependent on the frequent and irreversible rupture of their nuclear envelopes, which results in the exposure of their DNA contents to the cytoplasm. In this review, we discuss models of defective nuclear envelope deposition on missegregated chromosomes that lead to nuclear envelope rupture. Furthermore, we expound upon the various downstream consequences of micronucleus nuclear envelope rupture on cells. These consequences include a massive DNA rearrangement phenomenon called chromothripsis and activation of the cGAS-STING innate immune signaling pathway, which can be a double-edged sword with tumorigenesis and tumor prevention functions. Although micronuclei are small structures, the impact they have on cells and their microenvironment is quite large.

Development and Characteristics of Interspecific Hybrids between Brassica oleracea L. and B. napus L.

Interspecific hybridization between B. oleracea inbred lines of head cabbage, Brussels sprouts, kale and B. taurica and inbred lines of rapeseed (B. napus L.) were performed aiming at the development of the new sources of genetic variability of vegetable Brassicas. Using conventional crossings and the embryo-rescue techniques the following interspecific hybrids were developed: 11 genotypes of F1 generation, 18 genotypes of F2 and F1 × F2 generations (produced after self- and cross-pollination of interspecific F1 hybrids), 10 plants of the BC1 generation (resulted from crossing head cabbage cytoplasmic male-sterile lines with interspecific hybrids of the F2 and F1 generations) and 8 plants of BC1 × (F1 × F2). No viable seeds of the BC2 generation (B. oleracea) were obtained due to the strong incompatibility and high mortality of embryos. The morphological characteristics during the vegetative and generative stages, pollen characteristics, seed development and propagation, nuclear DNA contents and genome compositions of interspecific hybrids were analyzed. All the interspecific F1 hybrids were male-fertile with a majority of undeveloped and malformed pollen grains. They showed intermediate values for morphological traits and nuclear DNA contents and had nearly triploid chromosomal numbers (27 to 29) compared with parental lines. The F2 generation had a doubled nuclear DNA content, with 52 and 56 chromosomes, indicating their allohexaploid nature. F2 hybrids were characterized by a high heterosis of morphological characteristics, viable pollen and good seed development. F1 × F2 hybrids were male-fertile with a diversified DNA content and intermediate pollen viability. BC1 plants were male-sterile with an intermediate nuclear DNA content between the F2 and head cabbage, having 28 to 38 chromosomes. Plants of the BC1 × (F1 × F2) generation were in majority male-fertile with 38–46 chromosomes, high seed set, high heterosis and intermediate values for morphological traits. The obtained interspecific hybrids are valuable as new germplasm for improving Brassica-breeding programs.