The meaning of absence: the primate tree that did not make it into Darwin's The Descent of Man

This paper engages with a specific image: Darwin's tree of the primates. Although this diagram was sketched in ink on paper in 1868, it did not make it into the publication of The Descent of Man (1871). This may seem all the more in need of an explanation because, as Adrian Desmond and James Moore have shown, Darwin strongly relied on the notion of familial genealogy in the development of his theory of organismic evolution, or rather descent. However, Darwin expressed scepticism towards visualizations of phylogenies in correspondence with Ernst Haeckel and in fact also in Descent, considering such representations at once too speculative and too concrete. An abstraction such as a tree diagram left little room to ponder possibilities or demarcate hypotheses from evidence. I thus bring Darwin's primate tree into communication with his view on primate and human phylogeny as formulated in Descent, including his rejection of polygenism. I argue that considering the tree's inherent teleology, as well as its power to suggest species status of human populations and to reify ‘racial’ hierarchies, the absence of the diagram in The Descent of Man may be a significant statement.

Interspecific sexual selection, a new theory for an old practice: the increase of artificial biodiversity through creation of modern, standardized breeds

Darwin set the pillars of organismic evolution when he defined natural and sexual selection in the 19th century. Concurrently, a frenzy of selective breeding programmes, generally supported by the wealthy and aristocratic, gave rise to novel breeds of plants and animals at a rate that was previously unforeseen. Since then, breeds selected over millennia and adapted to local conditions began to disappear or were threatened with extinction, being substituted by these new, standardized breeds. It is of interest to explore how new breeds emerged and what the main criteria of the founders of these breeds were. Darwin seemed to be unaware that his contemporaries were practicing a form of interspecific sexual selection responsible for the fixation of exaggerated traits, often plainly ornamental, in the new breeds they intended to create. Parent animals were chosen by individuals who were following particular goals, often with aesthetic criteria in mind. Here we investigated who were the founders of modern breeds in five domesticated species (dogs, cats, pigs, horses and cattle), as very often a single person is credited with the creation of a breed. We found information on founders of 459 breeds, 270 of which were created after 1800. Interestingly, for these species, breed creation is overwhelmingly attributed to men. In the wild, however, the choice of mate is usually performed by the female of a species and thought to be adaptive. Breeders in the Victorian era, nevertheless, lacked such adaptive skills and had little scientific knowledge. The selection of individuals with an extreme expression of the desired traits were often close relatives, resulting in high inbreeding and a variety of genetic disorders.

Origin of Species before Origin of Life: The Role of Speciation in Chemical Evolution

Speciation, an evolutionary process by which new species form, is ultimately responsible for the incredible biodiversity that we observe on Earth every day. Such biodiversity is one of the critical features which contributes to the survivability of biospheres and modern life. While speciation and biodiversity have been amply studied in organismic evolution and modern life, it has not yet been applied to a great extent to understanding the evolutionary dynamics of primitive life. In particular, one unanswered question is at what point in the history of life did speciation as a phenomenon emerge in the first place. Here, we discuss the mechanisms by which speciation could have occurred before the origins of life in the context of chemical evolution. Specifically, we discuss that primitive compartments formed before the emergence of the last universal common ancestor (LUCA) could have provided a mechanism by which primitive chemical systems underwent speciation. In particular, we introduce a variety of primitive compartment structures, and associated functions, that may have plausibly been present on early Earth, followed by examples of both discriminate and indiscriminate speciation affected by primitive modes of compartmentalization. Finally, we discuss modern technologies, in particular, droplet microfluidics, that can be applied to studying speciation phenomena in the laboratory over short timescales. We hope that this discussion highlights the current areas of need in further studies on primitive speciation phenomena while simultaneously proposing directions as important areas of study to the origins of life.

Paleontology: advancing China's international leadership

In recent years, Chinese scientists have achieved significant progress in paleontological discoveries and scientific studies. Series of studies published in top journals, such as Science, Nature and Proceedings of the National Academy of Sciences of the United States of America (PNAS), have astonished the world by presenting beautiful fossils that furnish robust evidence to enrich the understanding of organismic evolution, major extinctions and stratigraphy. It has been portrayed as the heyday in the paleontology of China. What is the status of the field? What factors have caused the avalanche of fossil discoveries in China? What implications can these new discoveries provide for our understanding of current evolution theories? How, given their significant contribution to the world's paleontology scholarship, can Chinese scientists play a due leadership role in the field? At an online forum organized by the National Science Review (NSR), its associate editor-in-chief, Zhonghe Zhou, asked four scientists in the field as well as NSR executive editor-in-chief Mu-ming Poo to join the discussion. Jin Meng Paleobiologist at American Museum of Natural History Mu-ming Poo Neurobiologist at Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences Shuzhong Shen Stratigrapher at Nanjing Institute of Geology and Paleontology, Chinese Academy of Sciences Shuhai Xiao Paleobiologist and geobiologist at Virginia Polytechnic Institute and State University Zhonghe Zhou (Chair) Paleobiologist at Institute of Vertebrate Paleontology and Paleoanthropology (IVPP), Chinese Academy of Sciences

Energy and Society

This chapter shows how energy has shaped society, from prehistoric times through today’s fossil fuel-driven civilization. It suggests that both prehistoric human evolution and the course of history can be interpreted as the quest for controlling greater stores and flows of more concentrated and more versatile forms of energy. It also views human dependence on ever-higher energy flows as an inevitable continuation of organismic evolution. The chapter first provides an overview of how energy flows and storages are measured before discussing how the combustion of fossil fuels and the generation of electricity gave rise to a new form of high-energy civilization whose primary energy sources now include renewable energy such as solar and wind energy. It then considers several first principles that underlie all conversions of energy, including those for calculating energy and power, and concludes with an assessment of complexities and caveats involved in measuring energy storages and flows.

Eukaryotic genome evolution: rearrangement and coevolution of compartmentalized genetic information

The plant cell operates with an integrated, compartmentalized genome consisting of nucleus/cytosol, plastids and mitochondria that, in its entirety, is regulated in time, quantitatively, in multicellular organisms and also in space. This genome, as do genomes of eukaryotes in general, originated in endosymbiotic events, with at least three cells, and was shaped phylogenetically by a massive and highly complex restructuring and intermixing of the genetic potentials of the symbiotic partners and by lateral gene transfer. This was accompanied by fundamental changes in expression signals in the entire system at almost all regulatory levels. The gross genome rearrangements contrast with a highly specific compartmental interplay, which becomes apparent in interspecific nuclear-plastid cybrids or hybrids. Organelle exchanges, even between closely related species, can greatly disturb the intracellular genetic balance (‘hybrid bleaching’), which is indicative of compartmental coevolution and is of relevance for speciation processes. The photosynthetic machinery of plastids, which is embedded in that genetic machinery, is an appealing model to probe into genomic and organismic evolution and to develop functional molecular genomics. We have studied the reciprocal Atropa belladonna-Nicotiana tabacum cybrids, which differ markedly in their phenotypes, and found that transcriptional and post-transcriptional processes can contribute to genome/plastome incompatibility. Allopolyploidy can influence this phenomenon by providing an increased, cryptic RNA editing potential and the capacity to maintain the integrity of organelles of different taxonomic origins.