Potted 1-year-old `Starking Spur' and `Golden Delicious' trees on MM.106 were used to characterize the metabolic changes in lateral buds and rrots during their transition from para- to endodormancy. Sampling period was from 4 Sept. to 25 Nov. 1999 at 10-day intervals. Well-formed lateral buds were collected from the apical section of current growth; while root samples were white rootlets. Isothermal calorimetry at 25 °C was used to evaluated metabolic activity (q), respiration rate (RCO2), metabolic efficiency (q/RCO2), and growth rate (RSG·ΔHB). In both cultivars, q from buds showed significant differences (P ≤ 0.05) among sampling dates; `Starking' rose from 1.8 to 3.7 μW/mg dry weight (dw), while in `Golden' change was from 2.1 to 3.3 μW/mg dw. RCO2, q/RCO2, and RSG·ΔHB showed a pattern similar to q. On each sampling date, cuttings were also forced to break and, in all dates, buds broke after 21 days, demonstrating a paradormant condition. MM.106 root tips q behave differently depending on the variety they were grafted on to. When grafted with `Starking', root tips produced a small, but significant, increase in q (from 9.1 to 15.7 μW/mg dw) as the season progressed. RCO2 and RSG·ΔHB behaved similarly, increasing from 27.6 to 57.6 mmol CO2/mg dw and 3.4 to 8.3 μW/mg dw, respectively. These conditions agreed with a dynamic root growth. A small decrease in q/RCO2 was observed. However, when grafted with `Golden' root tips metabolic responses did not increase; furthermore, q decreased while RCO2, q/RCO2, and RSG·ΔHB did not show a defined pattern. Four complete 2-year-old trees of each variety, kept in 1-m3 containers, were sampled. The relation of root/wood dry matter was estimated, with difference found between varieties.