Microbial and Geochemical Evidence of Permafrost Formation at Mamontova Gora and Syrdakh, Central Yakutia

Biotracers marking the geologic history and permafrost evolution in Central Yakutia, including Yedoma Ice Complex (IC) deposits, were identified in a multiproxy analysis of water chemistry, isotopic signatures, and microbial datasets. The key study sections were the Mamontova Gora and Syrdakh exposures, well covered in the literature. In the Mamontova Gora section, two distinct IC strata with massive ice wedges were described and sampled, the upper and lower IC strata, while previously published studies focused only on the lower IC horizon. Our results suggest that these two IC horizons differ in water origin of wedge ice and in their cryogenic evolution, evidenced by the differences in their chemistry, water isotopic signatures and the microbial community compositions. Microbial community similarity between ground ice and host deposits is shown to be a proxy for syngenetic deposition and freezing. High community similarity indicates syngenetic formation of ice wedges and host deposits of the lower IC horizon at the Mamontova Gora exposure. The upper IC horizon in this exposure has much lower similarity metrics between ice wedge and host sediments, and we suggest epigenetic ice wedge development in this stratum. We found a certain correspondence between the water origin and the degree of evaporative transformation in ice wedges and the microbial community composition, notably, the presence of Chloroflexia bacteria, represented by Gitt-GS-136 and KD4-96 classes. These bacteria are absent at the ice wedges of lower IC stratum at Mamontova Gora originating from snowmelt, but are abundant in the Syrdakh ice wedges, where the meltwater underwent evaporative isotopical fractionation. Minor evaporative transformation of water in the upper IC horizon of Mamontova Gora, whose ice wedges formed by meltwater that was additionally fractionated corresponds with moderate abundance of these classes in its bacterial community.

Types and Micromorphology of Authigenic Carbonates in the Kolyma Yedoma Ice Complex, Northeast Siberia

The study focuses on authigenic carbonates that are widespread in different deposition environments and are a component part of the terrestrial biogeochemical cycle of carbon. Samples from the Kolyma Yedoma Ice Complex that formed during the Sartan Cryochrone (MIS 2), the coldest period of the Late Pleistocene, in the northeastern Siberian lowlands, have been studied utilizing scanning electron microscopy and energy-dispersive spectroscopy with replica technique. The samples bear signatures of irreversible multistage cryogenic changes in structure and composition, with the formation of authigenic minerals. Authigenic carbonates as secondary phases in the Ice Complex deposits are remarkable by local changes in chemical, physical, and other properties, which induce gradual changes in the lattice and conversion of one mineral species to another. As a result, the sediments may contain stable and metastable minerals. Crystalline species like calcite or aragonite precipitate from aqueous solutions and their presence are restricted to free pore space in segregation ice. Metastable phases may be produced as an initial reaction product between the CO2 and the aqueous phase, while mineral surfaces and small pores act as possible nucleation sites. Organic matter is also an important agent in the cryometamorphism of sediments, including precipitation of authigenic phases due to the freezing of colloids and high-molecular compounds.

Paleo-Ecology of the Yedoma Ice Complex on Sobo-Sise Island (EasternLena Delta, Siberian Arctic)

Late Pleistocene permafrost of the Yedoma type constitutes a valuable paleo-environmental archive due to the presence of numerous and well-preserved floral and faunal fossils. The study of the fossil Yedoma inventory allows for qualitative and quantitative reconstructions of past ecosystem and climate conditions and variations over time. Here, we present the results of combined paleo-proxy studies including pollen, chironomid, diatom and mammal fossil analyses from a prominent Yedoma cliff on Sobo-Sise Island in the eastern Lena Delta, NE Siberia to complement previous and ongoing paleo-ecological research in western Beringia. The Yedoma Ice Complex (IC) cliff on Sobo-Sise Island (up to 28 m high, 1.7 km long) was continuously sampled at 0.5 m resolution. The entire sequence covers the last about 52 cal kyr BP, but is not continuous as it shows substantial hiatuses at 36–29 cal kyr BP, at 20–17 cal kyr BP and at 15–7 cal kyr BP. The Marine Isotope Stage (MIS) 3 Yedoma IC (52–28 cal kyr BP) pollen spectra show typical features of tundra–steppe vegetation. Green algae remains indicate freshwater conditions. The chironomid assemblages vary considerably in abundance and diversity. Chironomid-based TJuly reconstructions during MIS 3 reveal warmer-than-today TJuly at about 51 cal kyr BP, 46-44 and 41 cal kyr BP. The MIS 2 Yedoma IC (28–15 cal kyr BP) pollen spectra represent tundra-steppe vegetation as during MIS 3, but higher abundance of Artemisia and lower abundances of algae remains indicate drier summer conditions. The chironomid records are poor. The MIS 1 (7–0 cal kyr BP) pollen spectra indicate shrub-tundra vegetation. The chironomid fauna is sparse and not diverse. The chironomid-based TJuly reconstruction supports similar-as-today temperatures at 6.4–4.4 cal kyr BP. Diatoms were recorded only after about 6.4 cal kyr BP. The Sobo-Sise Yedoma record preserves traces of the West Beringian tundra-steppe that maintained the Mammoth fauna including rare evidence for woolly rhinoceros’ presence. Chironomid-based TJuly reconstructions complement previous plant-macrofossil based TJuly of regional MIS 3 records. Our study from the eastern Lena Delta fits into and extends previous paleo-ecological Yedoma studies to characterize Beringian paleo-environments in the Laptev Sea coastal region.

A multimethod dating study of ancient permafrost, Batagay megaslump, east Siberia

Dating of ancient permafrost is essential for understanding long-term permafrost stability and interpreting palaeoenvironmental conditions but presents substantial challenges to geochronology. Here, we apply four methods to permafrost from the megaslump at Batagay, east Siberia: (1) optically stimulated luminescence (OSL) dating of quartz, (2) post-infrared infrared-stimulated luminescence (pIRIR) dating of K-feldspar, (3) radiocarbon dating of organic material, and (4) 36Cl/Cl dating of ice wedges. All four chronometers produce stratigraphically consistent and comparable ages. However, OSL appears to date Marine Isotope Stage (MIS) 3 to MIS 2 deposits more reliably than pIRIR, whereas the latter is more consistent with 36Cl/Cl ages for older deposits. The lower ice complex developed at least 650 ka, potentially during MIS 16, and represents the oldest dated permafrost in western Beringia and the second-oldest known ice in the Northern Hemisphere. It has survived multiple interglaciations, including the super-interglaciation MIS 11c, though a thaw unconformity and erosional surface indicate at least one episode of permafrost thaw and erosion occurred sometime between MIS 16 and 6. The upper ice complex formed from at least 60 to 30 ka during late MIS 4 to 3. The sand unit above the upper ice complex is dated to MIS 3–2, whereas the sand unit below formed at some time between MIS 4 and 16.

Sub-Surface Carbon Stocks in Northern Taiga Landscapes Exposed in the Batagay Megaslump, Yana Upland, Yakutia

The most massive and fast-eroding thaw slump of the Northern Hemisphere located in the Yana Uplands of Northern Yakutia was investigated to assess in detail the cryogenic inventory and carbon pools of two distinctive Ice Complex stratigraphic units and the uppermost cover deposits. Differentiating into modern and Holocene near-surface layers (active layer and shielding layer), highest total carbon contents were found in the active layer (18.72 kg m−2), while the shielding layer yielded a much lower carbon content of 1.81 kg m−2. The late Pleistocene upper Ice Complex contained 10.34 kg m−2 total carbon, and the mid-Pleistocene lower Ice Complex 17.66 kg m−2. The proportion of organic carbon from total carbon content is well above 70% in all studied units with 94% in the active layer, 73% in the shielding layer, 83% in the upper Ice Complex and 79% in the lower Ice Complex. Inorganic carbon is low in the overall structure of the deposits.

Sub-surface Carbon Stocks in Northern Taiga Landscapes Exposed in the Batagay Megaslump, Yana Upland, Yakutia

The most massive and fast-eroding thaw slump of the Northern Hemisphere located in the Yana uplands of northern Yakutia was investigated to assess in detail the cryogenic inventory and carbon pools of two distinctive Ice Complex stratigraphic units and the uppermost cover deposits. Differentiating into modern and Holocene near-surface layers (active layer and shielding layer), highest total carbon contents were found in the active layer (18.7 kg m-2), while the shielding layer yielded much lower carbon content of 1.8 kg m-2. The late Pleistocene upper Ice Complex contained 10.4 kg m-2 total carbon, and the mid-Pleistocene lower Ice Complex 17.7 kg m-2. The proportion of organic carbon from total carbon content is well above 70% in all studied units with 94 % in the active layer, 73% in the shielding layer, 83% in the upper Ice Complex and 79% in the lower Ice Complex. Inorganic carbon is low in the overall structure of the deposits.

Mechanistic insights into heme-mediated transcriptional regulation via a bacterial manganese-binding iron regulator, iron response regulator (Irr)

The transcription factor iron response regulator (Irr) is a key regulator of iron homeostasis in the nitrogen-fixating bacterium Bradyrhizobium japonicum. Irr acts by binding to target genes, including the iron control element (ICE), and is degraded in response to heme binding. Here, we examined this binding activity using fluorescence anisotropy with a 6-carboxyfluorescein-labeled ICE-like oligomer (FAM-ICE). In the presence of Mn2+, Irr addition increased the fluorescence anisotropy, corresponding to formation of the Irr–ICE complex. The addition of EDTA to the Irr–ICE complex reduced fluorescence anisotropy, but fluorescence was recovered after Mn2+ addition, indicating that Mn2+ binding is a prerequisite for complex formation. Binding activity toward ICE was lost upon introduction of substitutions in a His-cluster region of Irr, revealing that Mn2+ binds to this region. We observed that the His-cluster region is also the heme binding site; results from fluorescence anisotropy and electrophoretic mobility shift analyses disclosed that the addition of a half-equivalent of heme dissociates Irr from ICE, likely because of Mn2+ release due to heme binding. We hypothesized that heme binding to another heme binding site, Cys-29, would also inhibit the formation of the Irr–ICE complex because it is proximal to the ICE binding site, which was supported by the loss of ICE binding activity in a Cys-29–mutated Irr. These results indicate that Irr requires Mn2+ binding to form the Irr–ICE complex and that the addition of heme dissociates Irr from ICE by replacing Mn2+ with heme or by heme binding to Cys-29.

The genesis of Yedoma Ice Complex permafrost – grain-size endmember modeling analysis from Siberia and Alaska

The late Pleistocene Yedoma Ice Complex is an ice-rich and organic-bearing type of permafrost deposit widely distributed across Beringia and is assumed to be especially prone to deep degradation with warming temperature, which is a potential tipping point of the climate system. To better understand Yedoma formation, its local characteristics, and its regional sedimentological composition, we compiled the grain-size distributions (GSDs) of 771 samples from 23 Yedoma locations across the Arctic; samples from sites located close together were pooled to form 17 study sites. In addition, we studied 160 samples from three non-Yedoma ice-wedge polygon and floodplain sites for the comparison of Yedoma samples with Holocene depositional environments. The multimodal GSDs indicate that a variety of sediment production, transport, and depositional processes were involved in Yedoma formation. To disentangle these processes, a robust endmember modeling analysis (rEMMA) was performed. Nine robust grain-size endmembers (rEMs) characterize Yedoma deposits across Beringia. The study sites of Yedoma deposits were finally classified using cluster analysis. The resulting four clusters consisted of two to five sites that are distributed randomly across northeastern Siberia and Alaska, suggesting that the differences are associated with rather local conditions. In contrast to prior studies suggesting a largely aeolian contribution to Yedoma sedimentation, the wide range of rEMs indicates that aeolian sedimentation processes cannot explain the entire variability found in GSDs of Yedoma deposits. Instead, Yedoma sedimentation is controlled by local conditions such as source rocks and weathering processes, nearby paleotopography, and diverse sediment transport processes. Our findings support the hypothesis of a polygenetic Yedoma origin involving alluvial, fluvial, and niveo-aeolian transport; accumulation in ponding waters; and in situ frost weathering as well as postdepositional processes of solifluction, cryoturbation, and pedogenesis. The characteristic rEM composition of the Yedoma clusters will help to improve how grain-size-dependent parameters in permafrost models and soil carbon budgets are considered. Our results show the characteristic properties of ice-rich Yedoma deposits in the terrestrial Arctic. Characterizing and quantifying site-specific past depositional processes is crucial for elucidating and understanding the trajectories of this unique kind of ice-rich permafrost in a warmer future.