chemical selection
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Materials ◽  
2021 ◽  
Vol 14 (19) ◽  
pp. 5579
Author(s):  
Sergey A. Kukushkin ◽  
Andrey V. Osipov

In the present work, a new method for obtaining silicon carbide of the cubic polytype 3C-SiC with silicon vacancies in a stable state is proposed theoretically and implemented experimentally. The idea of the method is that the silicon vacancies are first created by high-temperature annealing in a silicon substrate Si(111) doped with boron B, and only then is this silicon converted into 3C-SiC(111), due to a chemical reaction with carbon monoxide CO. A part of the silicon vacancies that have bypassed “chemical selection” during this transformation get into the SiC. As the process of SiC synthesis proceeds at temperatures of ~1350 °C, thermal fluctuations in the SiC force the carbon atom C adjacent to the vacancy to jump to its place. In this case, an almost flat cluster of four C atoms and an additional void right under it are formed. This stable state of the vacancy, by analogy with NV centers in diamond, is designated as a C4V center. The C4V centers in the grown 3C-SiC were detected experimentally by Raman spectroscopy and spectroscopic ellipsometry. Calculations performed by methods of density-functional theory have revealed that the C4V centers have a magnetic moment equal to the Bohr magneton μB and lead to spin polarization in the SiC if the concentration of C4V centers is sufficiently high.



Author(s):  
Luis Francisco Salomé-Abarca ◽  
Dejan Gođevac ◽  
Min Sun Kim ◽  
Geum-Sook Hwang ◽  
Sang Cheol Park ◽  
...  

AbstractBased on the hypothesis that the variation of the metabolomes of latex is a response to selective pressure and should thus be affected differently from other organs, their variation could provide an insight into the defensive chemical selection of plants. Metabolic profiling was used to compare tissues of three Euphorbia species collected in diverse regions. The metabolic variation of latexes was much more limited than that of other organs. In all the species, the levels of polyisoprenes and terpenes were found to be much higher in latexes than in leaves and roots of the corresponding plants. Polyisoprenes were observed to physically delay the contact of pathogens with plant tissues and their growth. A secondary barrier composed of terpenes in latex and in particular, 24-methylenecycloartanol, exhibited antifungal activity. These results added to the well-known role of enzymes also present in latexes, show that these are part of a cooperative defense system comprising biochemical and physical elements.



2021 ◽  
Vol 220 (2) ◽  
Author(s):  
Xiaowei Yan ◽  
Nico Stuurman ◽  
Susana A. Ribeiro ◽  
Marvin E. Tanenbaum ◽  
Max A. Horlbeck ◽  
...  

CRISPR (clustered regularly interspaced short palindromic repeats)-based gene inactivation provides a powerful means for linking genes to particular cellular phenotypes. CRISPR-based screening typically uses large genomic pools of single guide RNAs (sgRNAs). However, this approach is limited to phenotypes that can be enriched by chemical selection or FACS sorting. Here, we developed a microscopy-based approach, which we name optical enrichment, to select cells displaying a particular CRISPR-induced phenotype by automated imaging-based computation, mark them by photoactivation of an expressed photoactivatable fluorescent protein, and then isolate the fluorescent cells using fluorescence-activated cell sorting (FACS). A plugin was developed for the open source software μManager to automate the phenotypic identification and photoactivation of cells, allowing ∼1.5 million individual cells to be screened in 8 h. We used this approach to screen 6,092 sgRNAs targeting 544 genes for their effects on nuclear size regulation and identified 14 bona fide hits. These results present a scalable approach to facilitate imaging-based pooled CRISPR screens.



2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Changhao Wang ◽  
Qianqian Qi ◽  
Wenying Li ◽  
Jingshuang Dang ◽  
Min Hao ◽  
...  

Abstract Natural biomolecules have been used extensively as chiral scaffolds that bind/surround metal complexes to achieve stereoselectivity in catalytic reactions. ATP is ubiquitously found in nature as an energy-storing molecule and can complex diverse metal cations. However, in biotic reactions ATP-metal complexes are thought to function mostly as co-substrates undergoing phosphoanhydride bond cleavage reactions rather than participating in catalytic mechanisms. Here, we report that a specific Cu(II)-ATP complex (Cu2+·ATP) efficiently catalyses Diels-Alder reactions with high reactivity and enantioselectivity. We investigate the substrates and stereoselectivity of the reaction, characterise the catalyst by a range of physicochemical experiments and propose the reaction mechanism based on density functional theory (DFT) calculations. It is found that three key residues (N7, β-phosphate and γ-phosphate) in ATP are important for the efficient catalytic activity and stereocontrol via complexation of the Cu(II) ion. In addition to the potential technological uses, these findings could have general implications for the chemical selection of complex mixtures in prebiotic scenarios.



Author(s):  
Xiaowei Yan ◽  
Nico Stuurman ◽  
Susana A. Ribeiro ◽  
Marvin E. Tanenbaum ◽  
Max A. Horlbeck ◽  
...  

ABSTRACTCRISPR (clustered regularly interspaced short palindromic repeats) -based gene inactivation provides a powerful means of linking genes to particular cellular phenotypes. CRISPR-based screening has mostly relied upon using large genomic pools of single guide RNAs (sgRNAs). However, this approach is limited to phenotypes that can be enriched by chemical selection or FACS sorting. Here, we developed a microscopy-based approach, which we name optical enrichment, to computationally select cells displaying a particular CRISPR-induced phenotype, mark them by photo-conversion of an expressed photo-activatable fluorescent protein, and then isolate the fluorescent cells using fluorescence-activated cell sorting (FACS). A plugin was developed for the open source software μManager to automate the phenotypic identification and photo-conversion of cells, allowing ~1.5 million individual cells to be screened in 8 hr. We used this approach to screen 6092 sgRNAs targeting 544 genes for their effects on nuclear size regulation and identified 14 bona fide hits. These results present a highly scalable approach to facilitate imaging-based pooled CRISPR screens.



2020 ◽  
Author(s):  
Luis Francisco Salomé-Abarca ◽  
Dejan Gođevac ◽  
Min Sun Kim ◽  
Geum-Sook Hwang ◽  
Sang Cheol Park ◽  
...  

AbstractBased on the hypothesis that variation of the metabolomes of latex is a response to selective pressure and should thus be affected differently from other organs, their variation could provide insight into the defensive chemical selection of plants. Metabolic profiling was utilized to compare tissues of Euphorbia species collected in various regions. The metabolic variation of latexes was much more limited than that of other organs. In all of the species, the levels of polyisoprenes and terpenoids were found to be much higher in latexes than in leaves and roots. Polyisoprenes were also observed to physically delay the contact and growth of pathogens with plant tissues. A secondary barrier composed of terpenes and, in particular, 24-methylenecycloartanol, exhibited antifungal activity. These results, together with the known roles of the enzymes also present in latexes, demonstrate that they are part of a cooperative defense system that comprises both biochemical and physical elements.



2020 ◽  
Vol 24 (Suppl. 1) ◽  
pp. 423-432
Author(s):  
Muhhamad Tahir ◽  
Wei Liu ◽  
Hongtao Zhou ◽  
Asadullah Memon ◽  
Ubedullah Ansari ◽  
...  

Surfactant and polymer flooding are the vital techniques used in petroleum industry to enhance the oil recovery. Development and advancement in such techniques has occurred time by time to overcome the challenges of oil and gas recovery. However, micro fluid chips and its development provide a new way to understand the real time behavior of fluid flow in porous media. The essence of this study has been achieved by collecting the information from literature studies and sorted the useful information to organize the pattern of micromodels chip revolution. In this study, first precise review is conducted by the innovations of micromodel chips into timescale from 1952 till date. Second, advancement in micromodel chip technology is included based on different periods of time where micromodel chips have evolved from chip design to nano scale visualization of chips. Third, some recommendations are proposed based on evolution of micromodel chip technology that it not only requires less time but also minimizing the massive experimental setup and complications. The overall finding of this research propose that in current times some microfluidic reforms made recently has played versatile role in improving injection chemical selection and similar improvements are expected to be developed in near future.



2020 ◽  
Author(s):  
Jonathan Anthony Collins ◽  
Braden Dunsmore ◽  
Mark Grutters ◽  
Lee Howard ◽  
Nitin Shintre ◽  
...  


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