A genome‐scale nutrient minimization forecast algorithm for controlling essential amino acid levels in CHO cell cultures

Author(s):  
Yiqun Chen ◽  
Xiao Liu ◽  
Ji Young Anderson ◽  
Harnish Mukesh Naik ◽  
Venkata Gayatri Dhara ◽  
...  
2020 ◽  
Vol 98 (Supplement_3) ◽  
pp. 76-76
Author(s):  
Ron Ball ◽  
Crystal L Levesque ◽  
D J Cadogan

Abstract Most sows are fed a constant energy and amino acid supply throughout gestation, in line with the recommendations of most authorities and swine genetic companies. These recommendations for sow feeding have seen little change in decades, despite the many ways that sows have changed dramatically in reproductive performance. Beginning in about the year 2000, sow litter size has steadily increased as a result of genetic selection. With this increase in litter number has been a steady decline in birth weight, and the resulting negative effects of lower birthweight on subsequent piglet performance. Many experiments using so-called ‘bump’ feeding, or increased energy intake in late gestation, have been conducted in attempts to arrest this decline in birthweight and piglet performance. Generally, these experiments have shown little to no improvement in birthweight and often have negative effects on sow feed intake during gestation. These experiments have ignored the fact that the energy:amino acid ratios (lysine, threonine, isoleucine, tryptophan) in late gestation are different than during early and mid-gestation. In recent research in Australia we hypothesised that rapidly increasing essential amino acid levels in late gestation would increase birth weight and potentially improve subsequent reproductive performance. Three hundred and thirty-four multiparous PIC sows (average parity 3.6, average LW 261 kg) were housed in a dynamic gestation pen after mating and randomly assigned to one of two diet regimes. Two 13.5 MJ/kg DE gestation diets were formulated and created by blending in an ESF. The Control diet contained 0.48 g SID lysine per MJ DE and SID threonine, methionine+ cysteine, isoleucine and tryptophan at 68%, 65%, 58% and18% of SID lysine and offered at 2.2kg/day from d 28 to d 110. Sow were then moved to the farrowing house and placed on a lactation diet at 3.5kg/d. The Treatment diet contained 0.55 g SID lysine/MJ DE and SID threonine, methionine+cysteine, isoleucine and tryptophan at 78%, 65%, 60% and 20% of SID lysine and offered at 2.1kg/d from d 28 to d 85 and then increased to 2.4 kg/d to d 110 d. Increasing essential amino acid levels in late gestation increased gestational weight gain (5.6 kg, P=0.004), increased total litter birth weight (1.25 kg, P=0.003), and increased the birthweight of liveborn pigs from 1.286 to 1.329 kg, (P=0.04). There was no significant effect on the total number born or born alive. Piglet performance is not available because this commercial farm practices cross-fostering. Effects of continuation of this feeding regime in the same sows during subsequent parities is currently being evaluated.


1973 ◽  
Vol 52 (2) ◽  
pp. 445-452 ◽  
Author(s):  
Robert E. Warnick ◽  
Jay O. Anderson

2009 ◽  
Vol 75 (11) ◽  
pp. 3627-3633 ◽  
Author(s):  
Margreet I. Pastink ◽  
Bas Teusink ◽  
Pascal Hols ◽  
Sanne Visser ◽  
Willem M. de Vos ◽  
...  

ABSTRACT In this report, we describe the amino acid metabolism and amino acid dependency of the dairy bacterium Streptococcus thermophilus LMG18311 and compare them with those of two other characterized lactic acid bacteria, Lactococcus lactis and Lactobacillus plantarum. Through the construction of a genome-scale metabolic model of S. thermophilus, the metabolic differences between the three bacteria were visualized by direct projection on a metabolic map. The comparative analysis revealed the minimal amino acid auxotrophy (only histidine and methionine or cysteine) of S. thermophilus LMG18311 and the broad variety of volatiles produced from amino acids compared to the other two bacteria. It also revealed the limited number of pyruvate branches, forcing this strain to use the homofermentative metabolism for growth optimization. In addition, some industrially relevant features could be identified in S. thermophilus, such as the unique pathway for acetaldehyde (yogurt flavor) production and the absence of a complete pentose phosphate pathway.


2016 ◽  
Author(s):  
Jorge Calle-Espinosa ◽  
Miguel Ponce-de-Leon ◽  
Diego Santos-Garcia ◽  
Francisco J. Silva ◽  
Francisco Montero ◽  
...  

Bacterial lineages that establish obligate symbiotic associations with insect hosts are known to possess highly reduced genomes with streamlined metabolic functions that are commonly focused on amino acid and vitamin synthesis. We constructed a genome-scale metabolic model of the whitefly bacterial endosymbiont Candidatus Portiera aleyrodidarum to study the energy production capabilities using stoichiometric analysis. Strikingly, the results suggest that the energetic metabolism of the bacterial endosymbiont relies on the use of pathways related to the synthesis of amino acids and carotenoids. A deeper insight showed that the ATP production via carotenoid synthesis may also have a potential role in the regulation of amino acid production. The coupling of energy production to anabolism suggest that minimization of metabolic networks as a consequence of genome size reduction does not necessarily limit the biosynthetic potential of obligate endosymbionts.


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