Proteomic analysis of rat microglia establishes a high-confidence reference data set of over 3000 proteins

PROTEOMICS ◽  
2011 ◽  
Vol 12 (2) ◽  
pp. 246-250 ◽  
Author(s):  
Harris Bell-Temin ◽  
David S. Barber ◽  
Ping Zhang ◽  
Bin Liu ◽  
Stanley M. Stevens
Sensors ◽  
2017 ◽  
Vol 17 (3) ◽  
pp. 559 ◽  
Author(s):  
Alan Bourke ◽  
Espen Ihlen ◽  
Ronny Bergquist ◽  
Per Wik ◽  
Beatrix Vereijken ◽  
...  

2020 ◽  
Vol 29 (3) ◽  
pp. 1608-1617
Author(s):  
Catriona M. Steele ◽  
Melanie Peladeau-Pigeon ◽  
Emily Barrett ◽  
Talia S. Wolkin

Purpose Reference data from healthy adults under the age of 60 years suggest that the 75th and 95th percentiles for pharyngeal residue on swallows of thin liquids are 1% and 3%(C2-4) 2 , respectively. We explored how pharyngeal residue below versus above these values prior to a swallow predicts penetration–aspiration. Method The study involved retrospective analysis of a previous research data set from 305 adults at risk for dysphagia. Participants swallowed six thin boluses and three each of mildly, moderately, and extremely thick barium in videofluoroscopy. Raters measured preswallow residue in %(C2-4) 2 units and Penetration–Aspiration Scale (PAS) scores for each swallow. Swallows were classified as (a) “clean baseline” (with no preswallow residue), (b) “clearing” swallows of residue with no new material added, or (c) swallows of “additional material” plus preswallow residue. Frequencies of PAS scores of ≥ 3 were compared across swallow type by consistency according to residue severity (i.e., ≤ vs. > 1%(C2-4) 2 and ≤ vs. > 3%(C2-4) 2 . Results The data set comprised 2,541 clean baseline, 209 clearing, and 1,722 swallows of additional material. On clean baseline swallows, frequencies of PAS scores of ≥ 3 were 5% for thin and mildly thick liquids and 1% for moderately/extremely thick liquids. Compared to clean baseline swallows, the odds of penetration–aspiration on thin liquids increased 4.60-fold above the 1% threshold and 4.20-fold above the 3% threshold (mildly thick: 2.11-fold > 1%(C2-4) 2 , 2.26-fold > 3%(C2-4) 2 ). PAS scores of ≥ 3 did not occur with clearing swallows of moderately/extremely thick liquids. Lower frequencies of above-threshold preswallow residue were seen for swallows of additional material than for clearing swallows. Compared to clean baseline swallows, the odds of PAS scores of ≥ 3 on swallows of additional material increased ≥ 1.86-fold above the 1% threshold and ≥ 2.15-fold above the 3% threshold, depending on consistency. Conclusion The data suggest that a pharyngeal residue threshold of 1%(C2-4) 2 is a meaningful cut-point for delineating increased risk of penetration–aspiration on a subsequent swallow.


2020 ◽  
Author(s):  
Kiran Mahat ◽  
Andrew Mitchell ◽  
Tshelthrim Zangpo

AbstractWe report the first detection of Fall Armyworm (FAW), Spodoptera frugiperda (Smith, 1797), in Bhutan. FAW feeds on more than 300 plant species and is a serious pest of many. It has been spreading through Africa since 2016 and Asia since 2018. In Bhutan, this species was first detected in maize fields in the western part of the country in September 2019 and subsequently found infesting maize crop in southern parts of the country in December 2019 and April 2020. Using morphological and molecular techniques the presence of the first invading populations of S. frugiperda in Bhutan is confirmed through this study. We present an updated reference DNA barcode data set for FAW comprising 374 sequences, which can be used to reliably identify this serious pest species, and discuss some of the reasons why such compiled reference data sets are necessary, despite the publicly availability of the underlying data. We also report on a second armyworm species, the Northern Armyworm, Mythimna separata (Walker, 1865), in rice, maize and other crops in eighteen districts of Bhutan.


2020 ◽  
Vol 128 (6) ◽  
pp. 1604-1616
Author(s):  
Dragoş M. Vasilescu ◽  
André B. Phillion ◽  
Daisuke Kinose ◽  
Stijn E. Verleden ◽  
Bart M. Vanaudenaerde ◽  
...  

Stereology has been the gold standard to quantify the three-dimensional lung anatomy using two-dimensional microscopy images. However, such techniques are labor intensive. This study provides a method that applies stereology to volumetric computed tomography images of frozen whole human lungs and systematic uniform random samples. The method yielded a comprehensive data set on the small airways and parenchymal lung structures, highlighting morphometric sex differences and providing a reference data set for future pathological studies.


2008 ◽  
Vol 17 (04) ◽  
pp. 659-685 ◽  
Author(s):  
VASILE RUS ◽  
PHILIP M. McCARTHY ◽  
DANIELLE S. McNAMARA ◽  
ARTHUR C. GRAESSER

In this paper we study a graph-based approach to the task of Recognizing Textual Entailment between a Text and a Hypothesis. The approach takes into account the full lexico-syntactic context of both the Text and Hypothesis and is based on the concept of subsumption. It starts with mapping the Text and Hypothesis on to graph structures that have nodes representing concepts and edges representing lexico-syntactic relations among concepts. An entailment decision is then made on the basis of a subsumption score between the Text-graph and Hypothesis-graph. The results obtained from a standard entailment test data set were promising. The impact of synonymy on entailment is quantified and discussed. An important advantage to a solution like ours is its ability to be customized to obtain high-confidence results.


Holzforschung ◽  
2006 ◽  
Vol 60 (4) ◽  
pp. 402-408 ◽  
Author(s):  
José Rodrigues ◽  
Ana Alves ◽  
Helena Pereira ◽  
Denilson da Silva Perez ◽  
Guillaume Chantre ◽  
...  

Abstract Both spectral noise and reference method noise affect the accuracy and the precision NIR predicted values. The reference noise is often neglected, and the few reports dealing with it only consider random noise artificially added to the original sound reference data. A calibration for lignin content of maritime pine (Pinus pinaster Ait.) wood meal was developed, but due to low precision and accuracy in the reference data set, NIR partial least-squares regression (PLSR) yielded a slope of 0.51 and an intercept at 14% Klason lignin. We demonstrate with an independent data set for external validation, obtained with higher precision and accuracy, that the NIR PLSR model based on the noisy reference data led to better results. The slope of the correlation between predicted and reference values was 0.89 and the intercept was 3.9. Thus, the model performed much better than expected from the cross-validation results. The predictability can be explained by the facts that the loadings of the first principal component (PC) of the calibration and test samples are very similar and dominated by lignin-related bands, and that most of the variation in the test set can be explained by the first PC. This only explains why the Klason lignin content could be predicted with the model without giving many spectral outliers, but not the good result of the external validation. We show that the latter can be explained by the inverse calibration used for PLSR and that predicted values can be more accurate and precise than the reference values used for calibration.


2017 ◽  
Vol 48 (4) ◽  
pp. 577-592 ◽  
Author(s):  
Agnieszka Sorokowska ◽  
Piotr Sorokowski ◽  
Peter Hilpert ◽  
Katarzyna Cantarero ◽  
Tomasz Frackowiak ◽  
...  

Human spatial behavior has been the focus of hundreds of previous research studies. However, the conclusions and generalizability of previous studies on interpersonal distance preferences were limited by some important methodological and sampling issues. The objective of the present study was to compare preferred interpersonal distances across the world and to overcome the problems observed in previous studies. We present an extensive analysis of interpersonal distances over a large data set ( N = 8,943 participants from 42 countries). We attempted to relate the preferred social, personal, and intimate distances observed in each country to a set of individual characteristics of the participants, and some attributes of their cultures. Our study indicates that individual characteristics (age and gender) influence interpersonal space preferences and that some variation in results can be explained by temperature in a given region. We also present objective values of preferred interpersonal distances in different regions, which might be used as a reference data point in future studies.


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