Selective recognition of pyrimidine motif triplexes by a protein encoded by the bacterial transposon Tn711Edited by M. Belfort

2001 ◽  
Vol 307 (5) ◽  
pp. 1161-1170 ◽  
Author(s):  
Jason E Rao ◽  
Nancy L Craig
Molecules ◽  
2020 ◽  
Vol 26 (1) ◽  
pp. 106
Author(s):  
Joana N. Martins ◽  
João Carlos Lima ◽  
Nuno Basílio

To this day, the recognition and high affinity binding of biomolecules in water by synthetic receptors remains challenging, while the necessity for systems for their sensing, transport and modulation persists. This problematic is prevalent for the recognition of peptides, which not only have key roles in many biochemical pathways, as well as having pharmacological and biotechnological applications, but also frequently serve as models for the study of proteins. Taking inspiration in nature and on the interactions that occur between several receptors and peptide sequences, many researchers have developed and applied a variety of different synthetic receptors, as is the case of macrocyclic compounds, molecular imprinted polymers, organometallic cages, among others, to bind amino acids, small peptides and proteins. In this critical review, we present and discuss selected examples of synthetic receptors for amino acids and peptides, with a greater focus on supramolecular receptors, which show great promise for the selective recognition of these biomolecules in physiological conditions. We decided to focus preferentially on small synthetic receptors (leaving out of this review high molecular weight polymeric systems) for which more detailed and accurate molecular level information regarding the main structural and thermodynamic features of the receptor biomolecule assemblies is available.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Xuesong Wang ◽  
Willem Jespers ◽  
Rubén Prieto-Díaz ◽  
Maria Majellaro ◽  
Adriaan P. IJzerman ◽  
...  

AbstractThe four adenosine receptors (ARs) A1AR, A2AAR, A2BAR, and A3AR are G protein-coupled receptors (GPCRs) for which an exceptional amount of experimental and structural data is available. Still, limited success has been achieved in getting new chemical modulators on the market. As such, there is a clear interest in the design of novel selective chemical entities for this family of receptors. In this work, we investigate the selective recognition of ISAM-140, a recently reported A2BAR reference antagonist. A combination of semipreparative chiral HPLC, circular dichroism and X-ray crystallography was used to separate and unequivocally assign the configuration of each enantiomer. Subsequently affinity evaluation for both A2A and A2B receptors demonstrate the stereospecific and selective recognition of (S)-ISAM140 to the A2BAR. The molecular modeling suggested that the structural determinants of this selectivity profile would be residue V2506.51 in A2BAR, which is a leucine in all other ARs including the closely related A2AAR. This was herein confirmed by radioligand binding assays and rigorous free energy perturbation (FEP) calculations performed on the L249V6.51 mutant A2AAR receptor. Taken together, this study provides further insights in the binding mode of these A2BAR antagonists, paving the way for future ligand optimization.


Talanta ◽  
2021 ◽  
pp. 122468
Author(s):  
Yuyan Yan ◽  
Renlu Han ◽  
Yafei Hou ◽  
Huijun Zhang ◽  
Jiancheng Yu ◽  
...  

2021 ◽  
Vol 1639 ◽  
pp. 461917
Author(s):  
Xinying Zheng ◽  
Yang Qin ◽  
Xiaobing Meng ◽  
Zhengyu Jin ◽  
Liuping Fan ◽  
...  

2021 ◽  
Author(s):  
David Paul Elisa Dayanidhi ◽  
Rosaria Pinky Malapati ◽  
Vaidyanathan Vaidyanathan Ganesan

Correction for ‘Selective recognition of DNA defects by cyclometalated Ir(iii) complexes’ by David Paul Elisa Dayanidhi et al., Dalton Trans., 2019, 48, 13536–13540, DOI: 10.1039/C9DT01225G.


Author(s):  
Ming Yan ◽  
Yilin Wu ◽  
Rongxin Lin ◽  
Faguang Ma ◽  
Zhongyi Jiang

Although many researchers have done lots of studies on improving the selective separation performance of membrane materials, conceptions and applications of membrane-based molecular imprinting separation&recognition with both high permselectivity and...


2020 ◽  
Vol 367 (22) ◽  
Author(s):  
Chris Coward ◽  
Gopujara Dharmalingham ◽  
Omar Abdulle ◽  
Tim Avis ◽  
Stephan Beisken ◽  
...  

ABSTRACT The use of bacterial transposon mutant libraries in phenotypic screens is a well-established technique for determining which genes are essential or advantageous for growth in conditions of interest. Standard, inactivating, transposon libraries cannot give direct information about genes whose over-expression gives a selective advantage. We report the development of a system wherein outward-oriented promoters are included in mini-transposons, generation of transposon mutant libraries in Escherichia coli and Pseudomonas aeruginosa and their use to probe genes important for growth under selection with the antimicrobial fosfomycin, and a recently-developed leucyl-tRNA synthase inhibitor. In addition to the identification of known mechanisms of action and resistance, we identify the carbon–phosphorous lyase complex as a potential resistance liability for fosfomycin in E. coli and P. aeruginosa. The use of this technology can facilitate the development of novel mechanism-of-action antimicrobials that are urgently required to combat the increasing threat worldwide from antimicrobial-resistant pathogenic bacteria.


2019 ◽  
Vol 6 (10) ◽  
pp. 1627-1636 ◽  
Author(s):  
Solène Collin ◽  
Nicolas Giraud ◽  
Elise Dumont ◽  
Olivia Reinaud

A biomimetic receptor allows selective recognition of organophosphates in water thanks to multipoint recognition associating coordination, electrostatics and cavity hosting.


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