scholarly journals Live Imaging, Identifying, and Tracking Single Cells in Complex Populations In Vivo and Ex Vivo

Author(s):  
Minjung Kang ◽  
Panagiotis Xenopoulos ◽  
Silvia Muñoz-Descalzo ◽  
Xinghua Lou ◽  
Anna-Katerina Hadjantonakis
Keyword(s):  
Ex Vivo ◽  
Endocrinology ◽  
2012 ◽  
Vol 153 (10) ◽  
pp. 4729-4739 ◽  
Author(s):  
Zahara Alim ◽  
Cheryl Hartshorn ◽  
Oliver Mai ◽  
Iain Stitt ◽  
Colin Clay ◽  
...  

Abstract Hormone-secreting cells within the anterior pituitary gland may form organized and interdigitated networks that adapt to changing endocrine conditions in different physiological contexts. For gonadotropes, this might reflect a strategy to cope with acute changes throughout different female reproductive stages. The current study examined gonadotropes in female mice at characteristically different hormonal stages: prepubertal, postpubertal, and lactating. Gonadotrope plasticity was examined at the level of the whole population and single cells at different stages by imaging both fixed and live pituitary slices. The use of a model animal providing for the identification of selectively fluorescent gonadotropes allowed the particular advantage of defining cellular plasticity specifically for gonadotropes. In vivo analyses of gonadotropes relative to vasculature showed significantly different gonadotrope distributions across physiological states. Video microscopy studies using live slices ex vivo demonstrated pituitary cell plasticity in the form of movements and protrusions in response to GnRH. As positive feedback from rising estradiol levels is important for priming the anterior pituitary gland for the LH surge, experiments provide evidence of estradiol effects on GnRH signaling in gonadotropes. The experiments presented herein provide new insight into potential plasticity of gonadotropes within the anterior pituitary glands of female mice.


Author(s):  
Zachary D. Wilson ◽  
Sean S. Kohles

Investigations in cellular and molecular engineering have explored the impact of nanotechnology and the potential for monitoring and control of human diseases. In a recent analysis, the dynamic fluid-induced stresses were characterized during microfluidic applications of an instrument with nanometer and picoNewton resolution as developed for single-cell biomechanics (Kohles, S. S., Nève, N., Zimmerman, J. D., and Tretheway, D. C., 2009, “Stress Analysis of Microfluidic Environments Designed for Isolated Biological Cell Investigations,” ASME J. Biomech. Eng., 131(12), p. 121006). The results described the limited stress levels available in laminar, creeping-flow environments, as well as the qualitative cellular strain response to such stress applications. In this study, we present a two-dimensional computational model exploring the physical application of normal and shear stress profiles (with 0.1, 1.0, and 10.0 Pa peak amplitudes) potentially available within uniform and extensional flow states. The corresponding cellular strains and strain patterns were determined within cells modeled with healthy and diseased mechanical properties (5.0–0.1 kPa moduli, respectively). Strain energy density results integrated over the volume of the planar section indicated a strong mechanical sensitivity involving cells with disease-like properties. In addition, ex vivo microfluidic environments creating in vivo stress states would require freestream flow velocities of 2–7 mm/s. Knowledge of the nanomechanical stresses-strains necessary to illicit a biologic response in the cytoskeleton and cellular membrane will ultimately lead to refined mechanotransduction relationships.


2018 ◽  
Author(s):  
Yizhi Wang ◽  
Nicole V. DelRosso ◽  
Trisha Vaidyanathan ◽  
Michael Reitman ◽  
Michelle K. Cahill ◽  
...  

AbstractRecent work examining astrocytic physiology centers on fluorescence imaging approaches, due to development of sensitive fluorescent indicators and observation of spatiotemporally complex calcium and glutamate activity. However, the field remains hindered in fully characterizing these dynamics, both within single cells and at the population-level, because of the insufficiency of current region-of-interest-based approaches to describe activity that is often spatially unfixed, size-varying, and propagative. Here, we present a paradigm-shifting analytical framework that releases astrocyte biologists from ROI-based tools. Astrocyte Quantitative Analysis (AQuA) software enables users to take an event-based approach to accurately capture and quantify the irregular activity observed in astrocyte imaging datasets. We apply AQuA to a range of ex vivo and in vivo imaging data, and uncover previously undescribed physiological phenomena in each. Since AQuA is data-driven and based on machine learning principles, it can be applied across model organisms, fluorescent indicators, experimental modes, and imaging resolutions and speeds, enabling researchers to elucidate fundamental astrocyte physiology.


2020 ◽  
Author(s):  
Yanjun Che ◽  
Sijia Feng ◽  
Jiangbo Guo ◽  
Junjun Hou ◽  
Xuesong Zhu ◽  
...  

Abstract Bone is playing an increasingly critical role in human health and disease. More noninvasive multi-scale imaging techniques are urgently required for investigations on the substructures and biological functions of bones. Our results firstly revealed that our prepared SWIR QDs acted as a bone-specific image contrast to achieve real-time imaging of bone structures both in vivo and ex vivo. The major bone structures of both Balb/C nude mouse and Balb/C mouse including the skull, spine, pelvis, limbs and the sternum could be rapidly and gradually identified via blood circulation after QDs injection in vivo. More importantly, the binding capability of our QDs mainly depend on the biological activities of bone tissues, suggesting our technique was suitable for in vivo live imaging. Additionally, the cell imaging results suggested that the potential mechanism of our bone imaging could be ascribed to the highly specific interaction between QDs and MC3T3-E1 cells. In a word, skeletal structures and biological activities of bones are anticipated to be observed and monitored with this QDs-guided SWIR imaging strategy, respectively. This radiation-free QDs-guided SWIR live imaging of bone can put new insights into a comprehensive study of bones in vivo and provide basis for early diagnosis of bone diseases.


2020 ◽  
Author(s):  
Tom Kaufman ◽  
Erez Nitzan ◽  
Nir Firestein ◽  
Miriam Ginzberg ◽  
Seshu Iyengar ◽  
...  

Abstract While multiplexing samples using DNA barcoding revolutionized the pace of biomedical discovery, multiplexing of live imaging-based applications has been limited by the number of fluorescent proteins that can be deconvoluted using common microscopy equipment. To address this limitation we developed visual barcodes that discriminate the clonal identity of single cells by targeting different fluorescent proteins to specific subcellular locations. We demonstrate that deconvolution of these barcodes is highly accurate and robust to many cellular perturbations. We then used visual barcodes to generate ‘Signalome’ cell-lines by multiplexing live reporters to monitor the simultaneous activity in 12 branches of signaling, in live cells, at single cell resolution, over time. Using the ‘Signalome’ we identified two distinct clusters of signaling pathways that balance growth and proliferation, emphasizing the importance of growth homeostasis as a central organizing principle in cancer signaling. The ability to multiplex samples in live imaging applications, both in vitro and in vivo may allow better high-content characterization of complex biological system


Blood ◽  
2021 ◽  
Vol 138 (Supplement 1) ◽  
pp. 2656-2656
Author(s):  
Ioanna Savvidou ◽  
Tiffany Khong ◽  
Irena Carmichael ◽  
Jaynish S Shah ◽  
Sridurga Mithraprabhu ◽  
...  

Abstract Aim: Despite the adoption of novel therapeutic modalities, Multiple Myeloma (MM) remains incurable. The Bcl2 inhibitor Venetoclax is active in several haematologic malignancies, but the benefits in MM patients are limited to those with the t(11;14) and/or high Bcl2 expression. These results underscore the significance of Bcl2 alternative anti-apoptotic proteins (Mcl1 and BclxL) for the survival of myeloma cells. Method: We validated the anti MM effect of the Mcl1 inhibitor S63845 both in vitro utilising 11 human myeloma cell lines (HMCL) and ex vivo against n=30 primary MM tumours. Comparative analysis of RNAseq between S63845 sensitive and resistant HMCL was undertaken to identify candidate proteins that potentially modulate resistance to S63845. Treatment with S63845 and rationally selected combination partners was further evaluated in vitro, ex vivo and in vivo with flow cytometry, immunoblotting and live imaging mitochondria fitness monitoring. Results: RNAseq identified BclxL as potential mediator of resistance to S63845 in HMCL. Immunoblotting confirmed high BclxL expression and high BclxL/BclS in S63845 resistant HMCL. Five S63845 resistant HMCL (U266, ANBL6, KMS28PE, EJM, MM1R) and primary tumours were treated with S63845 combined with the BclxL inhibitor A1331852 . Combined treatment of the HMCL demonstrated a high Bliss synergy score for all the HMCL tested (54, 42, 24, 47, 45 for U266, EJM, KMS28PE, MM1R and ANBL6 respectively) and induced synergistic killing of 80% of the primary tumours treated. Dual inhibition in U266 induced an 80% drop in intracellular ATP at 4h with an increase in active Caspases 9 and 8 (4.5 and 5 fold, respectively). Similarly, the combination induced a 78% drop in mitochondrial transmembrane potential (TMRE intensity) by 4h with live imaging revealing striking mitochondrial damage as early as 40 minutes after exposure (figure). These changes were associated with a reduction of both Mcl1 and, BclxL proteins and Bim and Bid protein levels. No changes were seen in the level of Bcl2, Bak or Bax protein expression. The combination of S63845 and A1331852 in healthy NSG mice at 12.5mg/kg proved lethal due to hepatotoxicity, arguing against the clinical utility of such an approach. However, this observed anti-MM synergistic activity was recapitulated when S63845 was combined with the already approved anti-MM therapeutic panobinostat, with the induction of a significant reduction in both BclxL and Myc protein levels at 24h, and synergistic killing of 56% of primary tumours. Conclusion: High BclxL expression and BclxL/BclxS ratio correlates with resistance to the Mcl1 inhibitor S63845. A combinatorial approach targeting Mcl1 and BclxL induced immediate and significant anti-MM effect both in vitro and ex vivo but proved to be toxic in vivo. Combination of the anti-MM therapeutic panobinostat in combination with S635845 recapitulated the anti-MM activity seen with A1331852 and warrants further evaluation. Figure 1 Figure 1. Disclosures Spencer: Celgene: Honoraria, Research Funding, Speakers Bureau; Janssen: Honoraria, Research Funding, Speakers Bureau; Amgen: Honoraria, Research Funding; Bristol Myers Squibb: Research Funding; Takeda: Honoraria, Research Funding, Speakers Bureau; STA: Honoraria.


2020 ◽  
Author(s):  
Halina Abramczyk ◽  
Jakub Maciej Surmacki ◽  
Beata Brozek-Pluska

AbstractThis paper presents a non-invasive approach to study redox status of cytochromes in vitro human brain cells of normal astrocytes (NHA), astrocytoma (CRL-1718), glioblastoma (U87- MG) and medulloblastoma (Daoy), and human breast cells of normal cells (MCF10A), slightly malignant cells (MCF7) and highly aggressive cells (MDA-MB-231), in vivo animal models, and ex vivo brain and breast tissues surgically resected human specimens by means of Raman microspectroscopy at 355 nm, 532 nm, 785 nm and endospectroscopic Raman probe at 785 nm. Here we show that the amount of reduced cytochrome becomes abnormally high in human brain tumors and breast cancers. In contrast, the amount of reduced cytochrome c is lower in cancer cells when compared to the normal one at in vitro conditions when the effect of microenvironment is eliminated. Mitochondrial dysfunction and alterations in the chemical composition of the nucleus, mitochondria, lipid droplets, cytoplasm in single cells have been detected by Raman imaging. Incubation in vitro with retinoic acid increases the amount of reduced cytochrome c.


2021 ◽  
Vol 12 ◽  
Author(s):  
Megumi Andoh ◽  
Ryuta Koyama

Microglia are highly dynamic in the brain in terms of their ability to migrate, proliferate, and phagocytose over the course of an individual's life. Real-time imaging is a useful tool to examine how microglial behavior is regulated and how it affects the surrounding environment. However, microglia are sensitive to environmental stimuli, so they possibly change their state during live imaging in vivo, mainly due to surgical damage, and in vitro due to various effects associated with culture conditions. Therefore, it is difficult to perform live imaging without compromising the properties of the microglia under physiological conditions. To overcome this barrier, various experimental conditions have been developed; recently, it has become possible to perform live imaging of so-called surveillant microglia in vivo, ex vivo, and in vitro, although there are various limitations. Now, we can choose in vivo, ex vivo, or in vitro live imaging systems according to the research objective. In this review, we discuss the advantages and disadvantages of each experimental system and outline the physiological significance and molecular mechanisms of microglial behavior that have been elucidated by live imaging.


Blood ◽  
2020 ◽  
Vol 136 (Supplement 1) ◽  
pp. 28-29
Author(s):  
Cristina Baricordi ◽  
Mariana Loperfido ◽  
Aimin Yan ◽  
Luigi Barbarossa ◽  
Mercedes Segura ◽  
...  

Human hematopoietic/stem progenitor CD34+ cells (HSPCs) are the core components of ex vivo lentiviral gene therapy (GT) for the treatment of rare monogenic diseases. Assessment of CD34+ composition before and after genetic modification as well as in vivo upon transplantation in the patient is a critical parameter to establish the efficacy of GT. We recently showed how the currently available immunophenotyping markers for the identification of HSPC subpopulations do not allow a clear-cut identification of the diversity of cell states within the CD34+ compartment. Furthermore, due to the instability of such markers upon in vitro manipulation, immunophenotyping does not offer a reliable assay to measure the HSPC content within the CD34+ Drug Product (DP). We have combined immunophenotyping, FACS sorting, and selective in vitro manipulation conditions with single-cell RNA-Sequencing (scRNA-Seq) capturing a picture of unprecedent clarity of CD34+ cells dynamics before and after expansion and genetic modification. Using the 10X Chromium System we firstly generated a comprehensive baseline map of CD34+ cell states (total of 77,692 single cells) from the 3 main sources of human HSPCs: bone marrow (BM), mobilized peripheral blood (G-CSF+plerixafor mobilization, MPB) and cord blood (CB). The combination of unsupervised clustering and expression of lineage-associated gene signatures allowed the identification of 11 cell states within these bulk CD34+ populations, and unveiled key differences in their composition depending on different cells' origin. We then investigated the dynamic changes of MPB CD34+ cells, the most advanced and clinically relevant HSPC cell source, upon ex vivo manipulation. To this aim we cultured bulk CD34+ cells and 7 FACS-sorted CD34+ subpopulations independently for 40 hours in presence of SCF, IL3, FLT3-L and TPO. Classical immunophenotyping of the CD34+ population before and after culture showed a substantial enrichment of cells with a CD34+CD38- profile suggesting a selective in vitro maintenance and expansion of primitive progenitors. However, immunophenotyping of individually cultured HSPC subsets revealed that the major factor contributing to this observation is instead the progressive loss of CD38 expression by CD38+ committed progenitors. Thus, the currently available CD34+ immunophenotyping characterization is not designed to provide an accurate assessment of the true DP composition before infusion into patients. By means of scRNA-Seq analysis of 81,126 single cells we were able to identify with high granularity the changes in cell state of each HSPC subset during culture. Firstly, the combined scRNA-seq analysis on sorted HSPC subsets at baseline allowed to draw the highest resolution map of MPB CD34+ cell states available to date (total of 24,736 single cells) and allowed the identification of 7 novel transcriptional states which are independent from the original cell fractionation based on the known CD34+ surface markers. Using these transcriptional signatures we interrogated the dynamic changes of each HSPC subset looking for transcriptional divergences/similarities between the baseline and the end of culture cell states. We could identify the trajectories of each subpopulation towards different hematopoietic differentiation stages upon in vitro manipulation. As expected HSCs and MPPs were the only subsets which maintained after culture a fraction of cells retaining the original primitive transcriptional signature. We believe that in this way we could quantify with unprecedented accuracy the putative fraction of cells in the DP that preserved a multipotent long-term potential vs the one that progressed towards myeloid differentiation identifying in the process variable degrees of cell maturation. We are currently exploring specific molecular signatures within the HSC compartment, which remained stable before and after culture, for the identification of novel more reliable markers of human HSC to be validated in vitro and in vivo. Overall our analytical platform provides the basis for unravelling and comparing the impact of multiple conditions of cell cultures and gene modification on the HSPC DP. To our knowledge this constitutes the most advanced suite for the comprehensive characterization of CD34+ cells states, with potential applications spanning manufacturing, pre-clinical and clinical stages. CB and ML: equal contribution Disclosures Baricordi: AVROBIO Inc: Current equity holder in publicly-traded company, Other: Trainee. Loperfido:AVROBIO Inc: Current equity holder in publicly-traded company, Other: Trainee. Yan:AVROBIO Inc: Current Employment. Barbarossa:AVROBIO Inc: Other: Trainee. Segura:AVROBIO Inc: Current Employment. Golipour:AVROBIO Inc: Current Employment, Current equity holder in publicly-traded company. Mason:AVROBIO Inc: Current Employment, Current equity holder in private company. Biasco:AVROBIO Inc: Current Employment, Current equity holder in publicly-traded company.


Blood ◽  
2008 ◽  
Vol 112 (11) ◽  
pp. 2443-2443 ◽  
Author(s):  
Pani A. Apostolidis ◽  
Anne Duchoud ◽  
Stephan Lindsey ◽  
William M. Miller ◽  
Eleftherios Papoutsakis

Abstract BACKGROUND AND HYPOTHESIS: Tumor suppressor p53 responds to cellular stress and elicits arrest of DNA synthesis and/or apoptosis. We have recently demonstrated that p53 is activated during Megakaryocytic (Mk) differentiation in both human primary cultured Mk cells and in the CHRF megakaryoblastic cell line. We also showed that miRNA-mediated down-regulation of p53 in CHRF cells results in higher Mk ploidy by means of enhancement of DNA synthesis and deferment of apoptosis. Additionally, we have shown that down-regulation of p53 affects its transcriptional activity and modulates the level of expression of its canonical transcriptional targets (Fuhrken PG et al. JBC, 2008; 283(23):15589). We thus hypothesize that p53 is activated during megakaryopoiesis in order to control polyploidization and the transition from endomitosis to apoptosis by impeding cell cycling and promoting apoptosis. Stabilization and activation of p53 involves a complex set of post-translational modifications such as phosphorylation, acetylation and ubiquitination. We propose that phosphorylation of distinct serine residues and acetylation of p53 are vital to its transcription factor role during megakaryopoiesis. METHODS: Multiparametric flow cytometry (FC) is a powerful technique to investigate cell signaling pathways permitting the simultaneous interrogation of single cells and detection of several post-translationally modified p53 proteins. We used FC to examine the in vivo levels of p53 in mouse bone marrow (BM) Mk cells and compare such levels to p53 levels in non-Mk BM cells and granulocytes (G cells) in particular (Gr-1+ cells). In addition we employed FC to examine the levels of total p53, p53 phosphorylated on serines 15, 37 and 46 and p53 acetylated on lysine 382 in Mk (CD41+) cells generated from culture of human mobilized peripheral blood-derived CD34+ cells with thrombopoietin (Tpo). Finally, we compare the levels of p53 in ex vivo generated Mk cells with those found in isogenic culture-derived G cells. RESULTS: In mice, we found that p53 is expressed at higher levels in CD41+ cells in the BM than other BM cells and Gr-1+ cells in particular. We established also that high p53 levels in Mk cells is not due to the large size of polyploid Mk cells, since it holds for 2N cells of either lineage. During ex vivo generated megakaryopoiesis, we observed a large increase in the percentage of polyploid Mk cells between days 7 and 9 of Tpo culture and by day 11 most Mk cells have become apoptotic. Total p53 levels increased continuously in Mk cells up until the end of Tpo culture (day 11). p53 levels were always substantially higher in Mk cells than in isogenic CD15+ G cells. Using immunofluorescence microscopy, we demonstrated that while p53 is low and mostly cytoplasmic in CD34+ cells, it translocates to the nucleus upon Mk differentiation. Consensus-DNA binding of p53 (by EMSA assays using nuclear extracts) continued to increase in CD41+ cells between days 5 and 9 of culture and eventually dropped at the end (day 11). The level of phosphorylated or acetylated p53 was higher in CD41+ than in CD34+ cells or in the CD41− cells of the culture. The sole exception was p53 phosphorylated on serine 46, which was expressed lower in CD41+ than in CD41− cells, but still higher than CD34+ cells. Phosphorylated p53 peaked around day 7 of Tpo culture in both absolute levels and as a fraction of total p53. When nicotinamide, a Sir2 deacetylase inhibitor, was added to increase ploidy and cell size (Giammona et al. Br. J. Haematol.2006; 135(4): 554), p53 acetylation was found to substantially increase. CONCLUSIONS: We conclude that p53 is activated during the course of Mk differentiation both in vivo and ex vivo and that the levels of p53 are predominantly high in Mk cells when compared to other isogenic hematopoietic cells. Taken together, these data support a model that activation of p53 occurs early in Mk differentiation through acquisition of specifically regulated posttranslational modifications and that the transcriptional activity of p53 is attenuated at a late stage of differentiation serving to increase DNA synthesis and polyploidization, which is in line with our hypothesis about the role of p53 in megakaryopoiesis.


Sign in / Sign up

Export Citation Format

Share Document