scholarly journals Dynamical study of infochemical influences on tropic interaction of diffusive plankton system

2021 ◽  
Vol 3 (3) ◽  
Author(s):  
Satish Kumar Tiwari ◽  
Ravikant Singh ◽  
Nilesh Kumar Thakur
Keyword(s):  
Dimethyl Sulfide ◽  
Algal Bloom ◽  
Turing Instability ◽  
Model System ◽  
Ode Model ◽  
Estuarine Ecosystem ◽  
Dynamical Study ◽  
Oscillatory Dynamics ◽  
The Stability ◽  
Microzooplankton Grazing

AbstractWe propose a model for tropic interaction among the infochemical-producing phytoplankton and non-info chemical-producing phytoplankton and microzooplankton. Volatile information-conveying chemicals (infochemicals) released by phytoplankton play an important role in the food webs of marine ecosystems. Microzooplankton is an ecologically important grazer of phytoplankton for coexistence of a large number of phytoplankton species. Here, we discuss how information transferred by dimethyl sulfide shapes the interaction of phytoplankton. Phytoplankton deterrents may lead to propagation of IPP bloom. The interaction between IPP and microzooplankton follows the Beddington–DeAngelis-type functional response. Analytically, we discuss boundedness, stability and Turing instability of the model system. We perform numerical simulation for temporal (ODE model) as well as a spatial model system. Our numerical investigation shows that microzooplankton grazing refuse of IPP leads to oscillatory dynamics. Increasing diffusion coefficient of microzooplankton shows Turing instability. Time evolution also plays an important role in the stability of system dynamics. The results obtained in this paper are useful to understand the dominance of algal bloom in coastal and estuarine ecosystem.

Stability and Folding of the Unusually Stable Hemoglobin from Synechocystis is Subtly Optimized and Dependent on the Key Heme Pocket Residues.

2020 ◽  
Vol 27 ◽  
Author(s):  
Sheetal Uppal ◽  
Mohd. Asim Khan ◽  
Suman Kundu
Keyword(s):  
Molten Globule ◽  
Life Forms ◽  
Model System ◽  
Heme Pocket ◽  
The Past ◽  
Specific Manner ◽  
Delivery Vehicles ◽  
The Stability ◽  
Key Residues ◽  
Synechocystis Sp

Aims: The aim of our study is to understand the biophysical traits that govern the stability and folding of Synechocystis hemoglobin, a unique cyanobacterial globin that displays unusual traits not observed in any of the other globins discovered so far. Background: For the past few decades, classical hemoglobins such as vertebrate hemoglobin and myoglobin have been extensively studied to unravel the stability and folding mechanisms of hemoglobins. However, the expanding wealth of hemoglobins identified in all life forms with novel properties, like heme coordination chemistry and globin fold, have added complexity and challenges to the understanding of hemoglobin stability, which has not been adequately addressed. Here, we explored the unique truncated and hexacoordinate hemoglobin from the freshwater cyanobacterium Synechocystis sp. PCC 6803 known as “Synechocystis hemoglobin (SynHb)”. The “three histidines” linkages to heme are novel to this cyanobacterial hemoglobin. Objective: Mutational studies were employed to decipher the residues within the heme pocket that dictate the stability and folding of SynHb. Methods: Site-directed mutants of SynHb were generated and analyzed using a repertoire of spectroscopic and calorimetric tools. Result: The results revealed that the heme was stably associated to the protein under all denaturing conditions with His117 playing the anchoring role. The studies also highlighted the possibility of existence of a “molten globule” like intermediate at acidic pH in this exceptionally thermostable globin. His117 and other key residues in the heme pocket play an indispensable role in imparting significant polypeptide stability. Conclusion: Synechocystis hemoglobin presents an important model system for investigations of protein folding and stability in general. The heme pocket residues influenced the folding and stability of SynHb in a very subtle and specific manner and may have been optimized to make this Hb the most stable known as of date. Other: The knowledge gained hereby about the influence of heme pocket amino acid side chains on stability and expression is currently being utilized to improve the stability of recombinant human Hbs for efficient use as oxygen delivery vehicles.

Turing Instability and Hopf Bifurcation in Cellular Neural Networks

2021 ◽  
Vol 31 (08) ◽  
pp. 2150143
Author(s):  
Zunxian Li ◽  
Chengyi Xia
Keyword(s):  
Neural Networks ◽  
Hopf Bifurcation ◽  
Turing Instability ◽  
Cellular Neural Networks ◽  
Bifurcation Theorem ◽  
Decoupling Method ◽  
Dynamical Behaviors ◽  
The Stability ◽  
Approximate Expressions ◽  
Zero Equilibrium

In this paper, we explore the dynamical behaviors of the 1D two-grid coupled cellular neural networks. Assuming the boundary conditions of zero-flux type, the stability of the zero equilibrium is discussed by analyzing the relevant eigenvalue problem with the aid of the decoupling method, and the conditions for the occurrence of Turing instability and Hopf bifurcation at the zero equilibrium are derived. Furthermore, the approximate expressions of the bifurcating periodic solutions are also obtained by using the Hopf bifurcation theorem. Finally, numerical simulations are provided to demonstrate the theoretical results.

Dynamics of a Continuous System With Clearance and Motion Limiting Stops

1999 ◽  
Author(s):  
P. Metallidis ◽  
S. Natsiavas
Keyword(s):  
Piecewise Linear ◽  
Research Work ◽  
Continuous System ◽  
Continuous Model ◽  
Equation Of Motion ◽  
Model System ◽  
Periodic Motions ◽  
System Parameters ◽  
Rigid Rods ◽  
The Stability

Abstract The present study generalises previous research work on the dynamics of discrete oscillators with piecewise linear characteristics and investigates the response of a continuous model system with clearance and motion-limiting constraints. More specifically, in the first part of this work, an analysis is presented for determining exact periodic response of a periodically excited deformable rod, whose motion is constrained by a flexible obstacle. This methodology is based on the exact solution form obtained within response intervals where the system parameters remain constant and its behavior is governed by a linear equation of motion. The unknowns of the problem are subsequently determined by imposing an appropriate set of periodicity and matching conditions. The analytical part is complemented by a suitable method for determining the stability properties of the located periodic motions. In the second part of the study, the analysis is applied to several cases in order to investigate the effect of the system parameters on its dynamics. Special emphasis is placed on comparing these results with results obtained for similar but rigid rods. Finally, direct integration of the equation of motion in selected areas reveals the existence of motions, which are more complicated than the periodic motions determined analytically.

scholarly journals Pattern Formation in Predator-Prey Model with Delay and Cross Diffusion

2013 ◽  
Vol 2013 ◽  
pp. 1-10 ◽  
Author(s):  
Xinze Lian ◽  
Shuling Yan ◽  
Hailing Wang
Keyword(s):  
Time Delay ◽  
Pattern Formation ◽  
Turing Instability ◽  
Predator Prey ◽  
Cross Diffusion ◽  
Predator Prey Model ◽  
Prey Model ◽  
Diffusion Controlled ◽  
The Stability ◽  
Self Replication

We consider the effect of time delay and cross diffusion on the dynamics of a modified Leslie-Gower predator-prey model incorporating a prey refuge. Based on the stability analysis, we demonstrate that delayed feedback may generate Hopf and Turing instability under some conditions, resulting in spatial patterns. One of the most interesting findings is that the model exhibits complex pattern replication: the model dynamics exhibits a delay and diffusion controlled formation growth not only to spots, stripes, and holes, but also to spiral pattern self-replication. The results indicate that time delay and cross diffusion play important roles in pattern formation.

scholarly journals Strength, character, and directionality of halogen bonds involving cationic halogen bond donors

2017 ◽  
Vol 203 ◽  
pp. 47-60 ◽  
Author(s):  
Kevin E. Riley ◽  
Khanh-An Tran
Keyword(s):  
Potential Energy ◽  
Halogen Bond ◽  
Model System ◽  
Potential Energy Curves ◽  
Chloride Salt ◽  
Halogen Bonds ◽  
Charged Species ◽  
Implicit Solvation Model ◽  
The Stability

Halogen bonds involving cationic halogen bond donors and anionic halogen bond acceptors have recently been recognized as being important in stabilizing the crystal structures of many salts. Theoretical characterization of these types of interactions, most importantly in terms of their directionality, has been limited. Here we generate high-quality symmetry adapted perturbation theory potential energy curves of a H3N–CC–Br+⋯Cl− model system in order to characterize halogen bonds involving charged species, in terms of contributions from electrostatics, exchange, induction, and dispersion, with special emphasis on analyzing contributions that are most responsible for the directionality of these interactions. It is found that, as in the case of neutral halogen bonds, exchange forces are important contributors to the directionality of charged halogen bonds, however, it is also found that induction effects, which contribute little to the stability and directionality of neutral halogen bonds, play a large role in the directionality of halogen bonds involving charged species. Potential energy curves based on the ωB97X-D/def2-TZVP/C-PCM method, which includes an implicit solvation model in order to mimic the effects of the crystal medium, are produced for both the H3N–CC–Br+⋯Cl− model system and for the 4-bromoanilinium⋯Cl− dimer, which is based on the real 4-bromoanilinium chloride salt, whose crystal structure has been determined experimentally. It is found that, within a crystal-like medium, charged halogen bond are significantly weaker than in the gas phase, having optimum interaction energies up to approximately −20 kcal mol−1.

Stability and Growth of Lennard-Jones Strained Layer Superlattice Interfaces

1984 ◽  
Vol 37 ◽  
Author(s):  
Brian W. Dodson
Keyword(s):  
Monte Carlo ◽  
Model System ◽  
Interatomic Potentials ◽  
Growth Processes ◽  
Strained Layer ◽  
Monte Carlo Techniques ◽  
Lennard Jones ◽  
Strained Layer Superlattice ◽  
The Stability

AbstractIn the context of a model system whose atoms interact via Lennard-Jones (LJ) interatomic potentials, we have studied the stability of an initially perfect strained layer superlattice interface (SLS) and the process of growth of a mismatched layer on a substrate using Monte Carlo techniques. An initially perfect SLS interface is found to be metastable up to 12% mismatch, a much higher value than is found on real SLS systems. In contrast, we find that, within the limitations of the calculations, a perfect SLS interface cannot be grown in an LJ system. The implications of these results for understanding SLS growth processes is discussed.

Sign in / Sign up

Export Citation Format

Share Document