Removal of nonylphenol by earthworms and bacterial community change

2014 ◽  
Vol 96 ◽  
pp. 9-17 ◽  
Author(s):  
Chu-Wen Yang ◽  
Sen-Lin Tang ◽  
Ling-Yun Chen ◽  
Bea-Ven Chang
2019 ◽  
Author(s):  
Jun Uetake ◽  
Naoko Nagatuska ◽  
Yukihiko Onuma ◽  
Nozomu Takeuchi ◽  
Hideaki Motoyama ◽  
...  

AbstractCryoconite granules, which are dark-colored biological aggregates on glaciers, effectively accelerate the melting of glacier ice. Bacterial community varies with granule size, however, community change in space and their susceptibility to environmental factors has not been described yet. Therefore, we focused on bacterial community from 4 different granule sizes (30-249 μm, 250- 750 μm, 750-1599 μm, more than 1600 μm diameter) in 10 glaciers in northwestern Greenland and their susceptibility for exogenous nutrients in cryoconite hole. A filamentous cyanobacterium Phormidesmis priestleyi, which has been frequently reported from glaciers in Arctic was abundant (10-26%) across any size of granules on most of glaciers. Bacterial community across glaciers became similar with size increase, and whence smallest size fractions contain more unique genera in each glacier. Multivariate analysis suggests that phosphate, which is significantly higher in one glacier (Scarlet Heart Glacier), is primary associated with bacterial beta diversity. Correlation coefficients between abundance of major genera and nutrients largely changed with granule size, suggesting that nutrients susceptibility to genera changes with growth process of granule (e.g. P. priestleyi was affected by nitrate in early growth stage).


2006 ◽  
Vol 72 (1) ◽  
pp. 628-637 ◽  
Author(s):  
Peter S. Kourtev ◽  
Cindy H. Nakatsu ◽  
Allan Konopka

ABSTRACT Chromium (VI) is toxic to microorganisms and can inhibit the biodegradation of organic pollutants in contaminated soils. We used microcosms amended with either glucose or protein (to drive bacterial community change) and Fe(III) (to stimulate iron-reducing bacteria) to study the effect of various concentrations of Cr(VI) on anaerobic bacterial communities. Microcosms were destructively sampled based on microbial activity (measured as evolution of CO2) and analyzed for the following: (i) dominant bacterial community by PCR-denaturing gradient gel electrophoresis (DGGE) of the 16S rRNA gene; (ii) culturable Cr-resistant bacteria; and (iii) enrichment of iron-reducing bacteria of the Geobacteraceae family by real-time PCR. The addition of organic C stimulated the activities of anaerobic communities. Cr(VI) amendment resulted in lower rates of CO2 production in glucose microcosms and a slow mineralization phase in protein-amended microcosms. Glucose and protein amendments selected for different bacterial communities. This selection was modified by the addition of Cr(VI), since some DGGE bands were intensified and new bands appeared in Cr(VI)-amended microcosms. A second dose of Cr(VI), added after the onset of activity, had a strong inhibitory effect when higher levels of Cr were added, indicating that the developing Cr-resistant communities had a relatively low tolerance threshold. Most of the isolated Cr-resistant bacteria were closely related to previously studied Cr-resistant anaerobes, such as Pantoea, Pseudomonas, and Enterobacter species. Geobacteraceae were not enriched during the incubation. The studied Cr(VI)-contaminated soil contained a viable anaerobic bacterial community; however, Cr(VI) altered its composition, which could affect the soil biodegradation potential.


2015 ◽  
Vol 1130 ◽  
pp. 410-413
Author(s):  
Xing Yu Liu ◽  
Ming Jiang Zhang ◽  
Wen Yan Liu ◽  
Bo Wei Chen ◽  
Chun Yu Meng ◽  
...  

An oligotrophic culture of acidophiles (Alicyclobacillus) isolated from Dexin acid mine drainage was evaluated for its synergistic effect in chalcopyrite bioleaching. Bioleaching of chalcopyrite with and without theAlicyclobacillusculture was investigated at different temperatures (33°C, 45 °C and 65 °C) and a culture-independent approach based on 16S rRNA gene clone library was used to analyze changes in the microbial community change during the bioleaching process. For 33oC leaching tests, only the bacterial community was analyzed, but for the other two temperatures, both the bacterial community and archaea communities were analyzed. Results showed that at high leaching temperature (65°C),Alicyclobacillusculture could increase copper leaching recovery from 57.83% to 60.7%. While at relative low temperature (45°C and 33°C), addingAlicyclobacillusculture inhibited copper bioleaching, copper leaching recovery decreased from 36.10% to 31.52% and from 34.02% to 21.97% respectively at 45°C and 33°C. Clone libraries analysis showed thatAlicyclobacillushelps the growth of genusSulfobacillusat 45 °C while inhibiting the growth of genusLeptospillumat both 33°C and 45 °C. Furthermore, when addingAlicyclobacillusgrowth ofFerroplasmawas limited andAcidoplasmawas facilitated at 45°C. At 60°C, addingAlicyclobacillusculture facilitated the growth of genusMetallosphaerawhile limiting the growth ofLeptospillumandFerroplasma. The results showed potential application ofAlicyclobacillusin high temperature chalcopyrite bioleaching and bioremediation of acid mine drainage.


2021 ◽  
Author(s):  
◽  
Rachel Parkinson

<p>Soil is frequently encountered as trace evidence in forensic science case-work, but because of the limitations of current analytical techniques, this evidence is rarely utilised. A technique has been developed that allows comparisons of soil samples to be made, based on molecular analysis of the bacterial communities living in the soil. This project assesses the practicality of using this technique, known as 16S rDNA T-RFLP community profiling, for forensic soil analysis, by refining the basic methodology and performing a preliminary evaluation of its reproducibility and utility. Initial difficulties associated with generating profiles from soil samples have been overcome through methodology improvement, and the technique has been found to be effective for generating simple, visual profiles that clearly demonstrate differences between soil samples. Soil bacterial community DNA profiling is likely to be a powerful yet simple forensic tool, providing the ability to routinely use soil as associative evidence. The potential for using the same technology to develop a time since death or post mortem interval (PMI) estimation tool was also investigated. This study monitored the changes in the soil bacterial community beneath decomposing human cadavers and pig carcasses and showed that community change is dynamic and progressive. These changes are caused by fluctuations in specific bacterial species populations that are able to utilise organic breakdown products released from the body over time. Release of the body’s natural microflora into the underlying soil may also contribute to an altered bacterial community. This project has demonstrated that the soil microbial community clearly changes over the course of decomposition, and potential exists for development of a PMI estimation tool based on soil bacterial community succession.</p>


2021 ◽  
Vol 12 ◽  
Author(s):  
Yao-Qin Sun ◽  
Yuan Ge

Soil invertebrate corpse decomposition is an ecologically significant, yet poorly understood, process affecting nutrient biogeochemical cycling in terrestrial ecosystems. Here, we attempted to answer how the substrate chemistry and microbial community change during soil invertebrate (earthworm) decomposition and what roles microbes play in this process. Specifically, the dead earthworms (Amynthas corticis) were buried in two soils where the earthworms inhabited, or not, until more than 50% of the earthworm mass was lost. For both soils, earthworms decomposed faster during the early stage (between 0 and 3 days), as reflected by the higher rate of decomposition and increased accumulation of dissolved organic matter (DOM). This decomposition pattern was paralleled by bacterial community dynamics, where bacterial richness and diversity were significantly higher during early decomposition (p &lt; 0.05) with the relative abundances of many genera decreasing as decomposition progressed. The succession of the bacterial community composition was significantly correlated with time-course changes in DOM composition (p &lt; 0.05). Particularly, more functional groups (e.g., microbes associated with carbon, nitrogen, and sulfur cycling) were identified to be linked with the change of a specific DOM type during the early decomposition phase. By exploring the ecologically important process of soil invertebrate decomposition and its associated bacterial communities, this study provides evidence, e.g., a statistically significant positive correlation between bacterial community and DOM compositions, which supports the widely recognized yet less-tested microbial community structure–function relationship hypothesis in invertebrate decomposition.


2020 ◽  
Author(s):  
Thomas Bott ◽  
Simon Gregory ◽  
George Shaw ◽  
Barbara Palumbo-Roe

&lt;p&gt;The UK has a legacy of onshore oil and gas wells. Aging extraction wells, with deteriorating cap engineering, may act as preferential pathways for gas seepage from the sub-surface. Seeps from hydrocarbon reservoirs are predominately composed of potent greenhouse gases, such as methane and carbon dioxide. Shifts in the soil microbial community are potential indicators of alkane gases rising from the sub-surface. Therefore, soil microbial community change could be used as a tool for monitoring aging, legacy wells, for gas seepage. An increased abundance in bacteria that metabolise methane (methanotrophs), or, C3-C4 alkanes (propanotrophs/butanotrophs) should be correlated with an increased flux of those gases, thereby indicating the presence of a seep.&lt;/p&gt;&lt;p&gt;In the South-East of the Auvergne-Rh&amp;#244;ne-Alpes region of France, there are several natural-gas analogue macro-seeps where the soil microbial community is potentially interacting with increased alkane fluxes. A well characterised natural gas seepage site was visited, and soil samples were collected for DNA analysis. Surface gas flux measurements and soil-pore gas concentrations (at 1 metre depth) were collected at the same sampling locations by BGRM involved in the ERA-ACT funded &lt;em&gt;Subsurface Evaluation of Carbon capture and storage and Unconventional Risk&lt;/em&gt; (SECURe) project. The abundance of alkanotrophs within the bacterial community was explored using quantitative-PCR assays of the key genes used in alkane metabolism. DNA was used in qPCR assays to estimate the proportion of methane monooxygenase and butane/propane oxidising genes within the total bacterial community (using 16S as a proxy). The in-field measurements of gases were contrasted with the relative abundance of methanotrophs and propanotrophs/butanotrophs.&lt;/p&gt;&lt;p&gt;Preliminary results suggest an increased abundance of methanotrophs above soils with higher pore gas concentrations of methane. These methanotrophs have oxidised the rising methane producing small isolated anomalies of increased methane flux at the surface. This suggests that methanotrophs might be a tool for locating soils with an increased methane concentration.&lt;/p&gt;


2019 ◽  
Vol 95 (7) ◽  
Author(s):  
Jun Uetake ◽  
Naoko Nagatsuka ◽  
Yukihiko Onuma ◽  
Nozomu Takeuchi ◽  
Hideaki Motoyama ◽  
...  

ABSTRACT Cryoconite granules are dark-colored biological aggregates on glaciers. Bacterial community varies with granule size, however, community change in space and their susceptibility to environmental factors has not been described yet. Therefore, we focused on bacterial community from four different granule sizes (30–249 μm, 250–750 μm, 750–1599 μm, more than 1600 μm diameter) in 10 glaciers in northwestern Greenland and their susceptibility to exogenous nutrients in cryoconite hole. A filamentous cyanobacterium Phormidesmis priestleyi, which has been frequently reported from glaciers in Arctic was abundant (10%–26%) across any size of granules on most of glaciers. Bacterial community across glaciers became similar with size increase, and whence smallest size fractions contain more unique genera in each glacier. Multivariate analysis revealed that effect of nutrients to beta diversity is larger in smaller granules (30–249 μm and 250–750 μm diameter), suggesting that bacterial susceptibility to nutrients changes with growth of granule (i.e. P. priestleyi was affected by nitrate in early growth stage).


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