A review of biochemical diversity and metabolic modeling of EBPR process under specific environmental conditions and carbon source availability

2021 ◽  
Vol 288 ◽  
pp. 112362
Author(s):  
Parnian Izadi ◽  
Parin Izadi ◽  
Ahmed Eldyasti
Biomolecules ◽  
2019 ◽  
Vol 9 (5) ◽  
pp. 198 ◽  
Author(s):  
Manoj K. Singh ◽  
Pradeep K. Rai ◽  
Anuradha Rai ◽  
Surendra Singh ◽  
Jay Shankar Singh

The production of poly-β-hydroxybutyrate (PHB) under varying environmental conditions (pH, temperature and carbon sources) was examined in the cyanobacterium Scytonema geitleri Bharadwaja isolated from the roof-top of a building. The S. geitleri produced PHB and the production of PHB was linear with the growth of cyanobacterium. The maximum PHB production (7.12% of dry cell weight) was recorded when the cells of S. geitleri were at their stationary growth phase. The production of PHB was optimum at pH 8.5 and 30 °C, and acetate (30 mM) was the preferred carbon source.


2010 ◽  
Vol 113-116 ◽  
pp. 1349-1352
Author(s):  
Xiang Yu ◽  
Bai Chun Huang ◽  
Li Jun Xing ◽  
Zhi Jun Xu ◽  
Xu Ming Wang

Removal of nitrate from groundwater was investigated using biodegradable snack ware (BSW) as carbon source and biofilm carrier. The experimental results show that low temperatures affect significantly denitrification efficiency using BSW as carbon source. Denitrification rates at 5 0C and 10 0C were 5 % and 13 % of rates observed at 30 0C, respectively. Denitrification supported by BSW could tolerate a relatively wide range of variation of pH and DO in the influent. Nitrite concentration in the effluent had little difference when pH value ranged from 4.5 to 8.5 in the influent. When DO concentration was between 0.9 and 5.0 mg/L, NO2-N concentration in the treated water never exceeded 0.15mg/L.


2020 ◽  
Vol 16 (11) ◽  
pp. e1008433
Author(s):  
Magdalena San Roman ◽  
Andreas Wagner

The evolution of cross-feeding among individuals of the same species can help generate genetic and phenotypic diversity even in completely homogeneous environments. Cross-feeding Escherichia coli strains, where one strain feeds on a carbon source excreted by another strain, rapidly emerge during experimental evolution in a chemically minimal environment containing glucose as the sole carbon source. Genome-scale metabolic modeling predicts that cross-feeding of 58 carbon sources can emerge in the same environment, but only cross-feeding of acetate and glycerol has been experimentally observed. Here we use metabolic modeling to ask whether acetate and glycerol cross-feeding are especially likely to evolve, perhaps because they require less metabolic change, and thus perhaps also less genetic change than other cross-feeding interactions. However, this is not the case. The minimally required metabolic changes required for acetate and glycerol cross feeding affect dozens of chemical reactions, multiple biochemical pathways, as well as multiple operons or regulons. The complexity of these changes is consistent with experimental observations, where cross-feeding strains harbor multiple mutations. The required metabolic changes are also no less complex than those observed for multiple other of the 56 cross feeding interactions we study. We discuss possible reasons why only two cross-feeding interactions have been discovered during experimental evolution and argue that multiple new cross-feeding interactions may await discovery.


mSphere ◽  
2019 ◽  
Vol 4 (2) ◽  
Author(s):  
Yang-Nim Park ◽  
Kayla Conway ◽  
Thomas P. Conway ◽  
Karla J. Daniels ◽  
David R. Soll

ABSTRACTCandida albicansremains the most pervasive fungal pathogen colonizing humans. The majority of isolates from hosts are heterozygous at the mating type locus (MTLa/α), and a third of these have recently been shown to be capable of switching to the opaque phenotype. Here we have investigated the roles of two transcription factors (TFs) Sfl2 and Efg1, in repressing switching ina/α strains. Deleting either gene results in the capacity ofa/α cells to switch to opaque en masse under facilitating environmental conditions, which includeN-acetylglucosamine (GlcNAc) as the carbon source, physiological temperature (37°C), and high CO2(5%). These conditions are similar to those in the host. Our results further reveal that while glucose is a repressor ofsfl2Δ andefg1Δ switching, GlcNAc is an inducer. Finally, we show that when GlcNAc is the carbon source, and the temperature is low (25°C), theefg1Δ mutants, but not thesfl2Δ mutants, form a tiny, elongate cell, which differentiates into an opaque cell when transferred to conditions optimal fora/α switching. These results demonstrate that at least two TFs, Sfl2 and Efg1, repress switching ina/α cells and thata/α strains with either ansfl2Δ orefg1Δ mutation can switch en masse but only under physiological conditions. The role of opaquea/α cells in commensalism and pathogenesis must, therefore, be investigated.IMPORTANCEMore than 95% ofCandida albicansstrains isolated from humans areMTLa/α, and approximately a third of these can undergo the white-to-opaque transition. Therefore, besides being a requirement forMTL-homozygous strains to mate, the opaque phenotype very likely plays a role in the commensalism and pathogenesis of nonmating,a/α populations colonizing humans.


2015 ◽  
Vol 66 (19) ◽  
pp. 5769-5781 ◽  
Author(s):  
Marco M. Lehmann ◽  
Katja T. Rinne ◽  
Carola Blessing ◽  
Rolf T. W. Siegwolf ◽  
Nina Buchmann ◽  
...  

2020 ◽  
Vol 22 (2) ◽  
pp. 201-210
Author(s):  
A. Ogunlaja ◽  
B.J. Ibidunni ◽  
K. Oyende ◽  
O.O. Ogunlaja

This study involved isolation of bioflocculant producing bacteria from soil and waste water. The isolates were tested for flocculation activities and  those deemed fit were identified and the optimal environmental conditions for bioflocculant production were also determined. Samples were collected from oil-contaminated soil in Redeemer's University and fermented maize waste water. Microbial isolation was done using standardmicrobiological methods and identification was done using morphology, biochemical and molecular method with universal primer for 16SrRNA gene. Environmental conditions (pH, Temperature and cations) and media composition (nitrogen and carbon sources) were altered to optimize bioflocculant production and activities. Percentage flocculating activities were determined and calculated using standard method. We also adjustedrevolution rate and standing time to determine the optimum conditions for flocculation activities. Two bioflocculant producing isolates (Bacillus cereus and Lysinibacillus fusiformis) from oil-polluted soil and two from fermented maize waste water (Bacillus thuringiensis and Bacillus tropicus) were obtained. Neutral pH, temperature o of 30 C and inclusion of CaCl were the best conditions for bioflocculant production in all isolates except for 2 Lysinibacillus fusiformis which was best with acidic pH condition. Maltose as the carbon source was the best for all isolates except Bacillus  thuringiensis (fructose) and ammonium was the best nitrogen source for all isolates except Bacillus cereus (peptone). Although condition III showed optimum condition for flocculation activities, the percentage activities were generally lower than normal condition. The highest percentage flocculating activities o of 98% were by Bacillus cereus and Bacillus tropicus at 30 C, neutral pH and 1% (w/v) CaCl salt with soluble starch 2 and maltose as their carbon source respectively. These bacteria can be exploited for their use as flocculants in water treatment. Keywords: Agro-residues; Bio-friendly; Bioflocculant; Contaminated soil; Optimization


2020 ◽  
Author(s):  
Putri Prasetyaningrum ◽  
Lorenzo Mariotti ◽  
Maria Cristina Valeri ◽  
Giacomo Novi ◽  
Stijn Dhondt ◽  
...  

AbstractOptimal plant growth performance requires that the action of growth signals, such as gibberellins (GA), are coordinated with the availability of photo-assimilates. Here, we studied the links between gibberellin biosynthesis and carbon availability, and the subsequent effects on growth. The results presented here show that carbon availability, light and dark cues, and the clock ensure the timing and magnitude of gibberellin biosynthesis and that disruption of these mechanisms results in reduced gibberellin levels and expression of downstream genes. Carbon dependent nighttime induction of GIBBERELLIN 3-BETA-DIOXYGENASE 1 (GA3ox1) was severely hampered when preceded by a day of lowered light availability, leading specifically to reduced bioactive GA4 levels, and coinciding with a decline in leaf expansion rate during the night. We attribute this decline in leaf expansion mostly to reduced photo-assimilates. However, plants where gibberellin limitation was alleviated had significantly improved expansion demonstrating the relevance of gibberellins in growth control under varying carbon availability. Carbon dependent expression of upstream gibberellin biosynthesis genes (KAURENE SYNTHASE, KS and GIBBERELLIN 20 OXIDASE 1, GA20ox1) was not translated into metabolite changes within this short timeframe. We propose a model where the extent of nighttime biosynthesis of bioactive GA4 by GA3ox1 is determined by starch, as the nighttime carbon source, and so provides day-to-day adjustment of gibberellin responses.


mSystems ◽  
2021 ◽  
Vol 6 (4) ◽  
Author(s):  
Christopher E. Lawson ◽  
Aniela B. Mundinger ◽  
Hanna Koch ◽  
Tyler B. Jacobson ◽  
Coty A. Weathersby ◽  
...  

Nitrospira spp. are globally abundant nitrifying bacteria in soil and aquatic ecosystems and in wastewater treatment plants, where they control the oxidation of nitrite to nitrate. Despite their critical contribution to nitrogen cycling across diverse environments, detailed understanding of their metabolic network and prediction of their function under different environmental conditions remains a major challenge.


Author(s):  
B. L. Soloff ◽  
T. A. Rado

Mycobacteriophage R1 was originally isolated from a lysogenic culture of M. butyricum. The virus was propagated on a leucine-requiring derivative of M. smegmatis, 607 leu−, isolated by nitrosoguanidine mutagenesis of typestrain ATCC 607. Growth was accomplished in a minimal medium containing glycerol and glucose as carbon source and enriched by the addition of 80 μg/ ml L-leucine. Bacteria in early logarithmic growth phase were infected with virus at a multiplicity of 5, and incubated with aeration for 8 hours. The partially lysed suspension was diluted 1:10 in growth medium and incubated for a further 8 hours. This permitted stationary phase cells to re-enter logarithmic growth and resulted in complete lysis of the culture.


Author(s):  
K. Ohi ◽  
M. Mizuno ◽  
T. Kasai ◽  
Y. Ohkura ◽  
K. Mizuno ◽  
...  

In recent years, with electron microscopes coming into wider use, their installation environments do not necessarily give their performance full play. Their environmental conditions include air-conditioners, magnetic fields, and vibrations. We report a jointly developed entirely new vibration isolator which is effective against the vibrations transmitted from the floor.Conventionally, large-sized vibration isolators which need the digging of a pit have been used. These vibration isolators, however, are large present problems of installation and maintenance because of their large-size.Thus, we intended to make a vibration isolator which1) eliminates the need for changing the installation room2) eliminates the need of maintenance and3) are compact in size and easily installable.


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