Histone H3 Inhibits Ubiquitin-Ubiquitin Intermolecular Interactions to Enhance Binding to DNA Methyl Transferase 1

2021 ◽  
pp. 167371
Author(s):  
Takunori Yasuda ◽  
Rikuri Morita ◽  
Yasuteru Shigeta ◽  
Ryuhei Harada
2011 ◽  
Vol 1 (5) ◽  
pp. 12-16
Author(s):  
Ravi Kapopara ◽  
S. Prasanth Kumar ◽  
S K Patel ◽  
D K Sadhu ◽  
Y T Jasrai ◽  
...  

Epigenetic events are due to altered gene expression without any changes inthe genetic material and characteristic of heritability via cell division. Theimpact of epigenetic control over cancer is one among the thrust area ofresearch in cancer biology. The present study deals about the virtual screeningof plant derived bioactives, directed against the key molecular regulatorsof the epigenetic events viz. DNA methyltransferases (DNMT1, DNMT2 andDNMT3B), Histone acetyltransferase (HAT), Histone deacetylase 8 (HDAC8),Histone H3 lysine 27 methyl transferase (H3K27MT) and Histone H3 specificlysine 4 demethylase (H3K4DM). This computational screening identifies themost efficient binders with respect to individual targets in terms of ligandbinding energy. The structure optimization of the best scored docked conformationswill be helpful to reveal new insights and development of naturalbioactives to combat cancer.


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 731-731
Author(s):  
Itsaso Hormaeche ◽  
Kim Rice ◽  
Joti Marango ◽  
Fabien Guidez ◽  
Arthur Zelent ◽  
...  

Abstract The promyelocytic leukemia zinc finger protein (PLZF) is a transcription factor fused to RARα in the t(11;17) translocation associated with retinoic acid resistant acute promyelocytic leukemia (APL). As a result of this chromosomal abnormality, two oncogenic proteins are produced, PLZF-RARα and RARα-PLZF. Wild type PLZF is expressed in CD34+ progenitor cells and declines during differentiation. PLZF is a tumor suppressor that causes cell cycle arrest, downregulating genes such as cyclinA2 and c-myc. We previously showed that transcriptional repression by PLZF is mediated by the recruitment of histone deacetylases to target genes, this being critical for its ability to control growth and affect RAR target genes. We now show that PLZF alters the methylation state of histones in its target genes. A biotinylated form of PLZF co-purified in cells along with a histone methyl transferase (HMT) activity for native histones. Using mutant histone H3 tail peptides, we showed that this activity methylated histone H3 on lysine 9 (H3K9me). Tagged forms of PLZF as well as endogenous PLZF co-precipitated in vivo with G9a histone methyl transferase, an enzyme that can mono and dimethylate H3K9 in euchromatin subject to gene repression. The interaction of PLZF with G9a required the presence of the N-terminal BTB/POZ domain as well as a second, more C-terminal, repression domain of PLZF. Given the newly found role of active histone demethylation in gene control we also tested the interaction of PLZF with LSD1, an enzyme associated with gene repression that demethylates H3K4. As in the case of G9a, the interaction of PLZF with LSD1 required both repression domains, suggesting, that these proteins may be part of a multi-protein complex containing multiple contact points with PLZF. Expression of G9a or LSD1 augmented transcriptional repression mediated by PLZF on reporter genes, indicating a functional interaction between histone methylation modifiers and PLZF. To determine the ability of PLZF to affect chromatin methylation in vivo, a Gal4-PLZF fusion protein was expressed in cells containing a chromatin-embedded Gal4-tk-Luciferase reporter gene. In the presence of PLZF, a chromatin immunoprecipitation experiment showed an increase in H3K9 methylation of the target gene while H3K4 methylation decreased, consistent with the ability of PLZF to interact with LSD1 and G9a. Lastly we compared the ability of the histone modifying proteins to interact with the APL fusion proteins PLZF-RARα, PML-RARα and NPM-RARα. Co-precipitation experiments showed a robust interaction between PLZF-RARα and G9a and LSD1 while the PML-RARα and NPM-RARα fusions bound these proteins significantly less avidly. Collectively all these data indicate that specific histone methylation is an important mode of action of PLZF in gene repression. The retinoic acid resistance of t(11;17)-APL may be related to its ability to interact with HMTs and histone demethylases. Hence therapeutic targeting of HMTs and histone demethylases might be considered as a novel mode of therapy in APL and other hematological malignancies.


2003 ◽  
Vol 23 (5) ◽  
pp. 1614-1622 ◽  
Author(s):  
Estelle Nicolas ◽  
Christine Roumillac ◽  
Didier Trouche

ABSTRACT Epigenetic marks that specify silent heterochromatic domains in eucaryotic genomes include methylation of histone H3 lysine 9. Strikingly, active loci in the vicinity of silent domains are sometimes characterized by acetylation of histone H3 lysine 9, suggesting that the balance between these two competitive modifications is important for the establishment of specific chromatin structures. Some euchromatic genes, targeted by the retinoblastoma protein Rb, are also believed to be regulated by histone H3 lysine 9 methylation. Here, we study the dihydrofolate reductase promoter, which is repressed in G0 and at the beginning of G1 by p107 or p130, two Rb-related proteins. We found that these two pocket proteins share with Rb the ability to associate with the histone methyl transferase SUV39H1. SUV39H1 can be recruited to the E2F transcription factor and functions as a transcriptional corepressor. With ChIP assays followed by real-time PCR, we showed that K9 of histone H3 evolves from a hypermethylated state in G0 to a hyperacetylated state at the G1/S transition. Taken together, these results indicate that the temporal regulation of euchromatic promoters may involve controlling the balance between methylation and acetylation of histone H3 lysine 9, a feature previously described for the spatial regulation of chromatin function.


2005 ◽  
Vol 17 (12) ◽  
pp. 3301-3310 ◽  
Author(s):  
Sang Yeol Kim ◽  
Yuehui He ◽  
Yannick Jacob ◽  
Yoo-Sun Noh ◽  
Scott Michaels ◽  
...  

2020 ◽  
Author(s):  
Mathew Sutherland ◽  
Alice Li ◽  
Anissa Kaghad ◽  
Dimitrios Panagopoulos ◽  
Fengling Li ◽  
...  

ABSTRACTProtein arginine N-methyl transferase 4 (PRMT4) asymmetrically dimethylates arginine residues of histone H3 and non-histone proteins. The overexpression of PRMT4 in several cancers has stimulated interest in the discovery of inhibitors as biological tools and potentially therapeutics. While several PRMT4 inhibitors have been reported, most display poor selectivity against other members of the PRMT family of methyl transferases. Here, we report the structure-based design of a new class of alanine containing 3-arylindoles as potent and selective PRMT4 inhibitors and describe key structure activity relationships for this class of compounds.


2020 ◽  
Author(s):  
Divya Reddy ◽  
Saikat Bhattacharya ◽  
Sanket Shah ◽  
Mudasir Rashid ◽  
Sanjay Gupta

AbstractH3.3 variant is a versatile histone important for development and disease. We report a DNA methylation dependent decrease of histone H3 variant H3.3 in hepatocellular carcinoma (HCC) development and an increase in the level of the H3.2 variant. The loss of H3.3 correlates with a decrease in the histone PTMs associated with active transcription. The overexpression of H3.3 and H3.2 did not affect global PTMs and cell physiology, probably owing to the deregulation of specific histone chaperones CAF-1 (for H3.2) and HIRA (for H3.3) that we observed in HCC. Notably, upon P150 (CAF-1 subunit) knockdown in HCC cell lines, a cell cycle arrest in S-phase was observed, possibly due to the decrease in the histone levels necessary for DNA packaging. Furthermore, H3.3 knockdown in a preneoplastic liver cell line led to an increase in cell proliferation and a decreased transcription of tumor suppressor genes, recapitulating the tumor cell phenotype. Importantly, our data suggest that the use of DNA Methyl Transferase (DNMT) and Histone Deacetylase (HDAC) inhibitors to restore the expression of H3.3 and the altered chromatin state for the better clinical management of the disease.


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 769-769 ◽  
Author(s):  
James J. Hsieh ◽  
Shugaku Takeda ◽  
David Y. Chen ◽  
Todd D. Westergard ◽  
Jill K. Fisher ◽  
...  

Abstract Taspase1 was identified as the threonine endopeptidase that cleaves MLL for proper Hox gene expression in vitro. To investigate its functions in vivo, we generated Taspase1−/− mice. Taspase1 deficiency results in non−cleavage (nc) of MLL and MLL2 and homeotic transformations. Remarkably, our in vivo studies uncover an unexpected role of Taspase1 in cell cycle. Taspase1−/− animals are smaller in size. Taspase1−/− MEFs exhibit impaired proliferation and acute deletion of Taspase1 leads to a marked reduction of thymocytes. Taspase1 deficiency incurs down−regulation of Cyclin Es, As, and Bs and up−regulation of p16Ink4a. We show that MLL and MLL2 directly target E2Fs for Cyclin expression. The un−cleaved precursor MLL displays a reduced histone H3 methyl transferase activity in vitro. Accordingly, CHIP assays demonstrate a markedly decreased histone H3 K4 tri−methylation at Cyclin E1 and E2 genes in Taspase1−/− cells. Furthermore, MLLnc/nc;2nc/nc MEFs are also impaired in proliferation. Our data are consistent with a model in which precursor MLLs, activated by Taspase1, target to Cyclins through E2Fs to methylate histone H3 at K4, leading to activation. Lastly, Taspase1−/− cells are resistant to oncogenic transformation and Taspase1 is over−expressed in many cancer cell lines. Thus, Taspase1 may serve as a target for cancer therapeutics.


2009 ◽  
Vol 6 (04) ◽  
pp. 191-198
Author(s):  
C. Konrad ◽  
A. Krug ◽  
T. Kircher

ZusammenfassungPsychiatrische Störungen sind zu einem großen Teil erblich beeinflusst. Ein verbessertes Verständnis der molekulargenetischen Grundlagen dieser Erblichkeit ist für Klassifikation, Erforschung der Pathogenese und Therapie bedeutsam. Die Gewinnung neuer Erkenntnisse hängt dabei entscheidend von der Auswahl des untersuchten Phänotyps ab. Die Varianz beobachtbarer Phänotypen wird durch eine Vielzahl unterschiedlicher Einflussfaktoren zu einem geringeren Anteil genetisch beeinflusst als die Varianz von Endophänotypen, die mit Hilfe der strukturellen und funktionellen Bildgebung beobachtet werden können. Wichtige Erkenntnisse aus der genetischen Depressions- und Schizophrenieforschung werden zu diesem Thema zusammengefasst. Der Einfluss von Kandidatengenen auf Erleben und Verhalten sowie auf strukturelle und funktionelle Bildgebungscharakteristika wird dargestellt, u.a. bezüglich des Serotonintransporter-Gens (5HTTLPR), Brain Derived Neurotrophic Factor (BDNF), Catechyl-O-Methyl-Transferase (COMT), Neuregulin1 (NRG1), Dysbindin (dystrobrevin binding protein 1, DTNBP1) und Zinkfinger Protein 804A (ZNF804A). Perspektiven für die psychiatrische Forschung werden diskutiert.


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