HADHB, a fatty acid beta-oxidation enzyme, is a potential prognostic predictor in malignant lymphoma

Pathology ◽  
2021 ◽  
Author(s):  
Yuji Sekine ◽  
Kouhei Yamamoto ◽  
Morito Kurata ◽  
Ayaka Honda ◽  
Iichiroh Onishi ◽  
...  
2019 ◽  
Vol 100 (3) ◽  
pp. 353-362 ◽  
Author(s):  
Kouhei Yamamoto ◽  
Shinya Abe ◽  
Ayaka Honda ◽  
Jun Hashimoto ◽  
Yuuki Aizawa ◽  
...  

2010 ◽  
Vol 33 (5) ◽  
pp. 479-494 ◽  
Author(s):  
Ronald J. A. Wanders ◽  
Jos P. N. Ruiter ◽  
Lodewijk IJlst ◽  
Hans R. Waterham ◽  
Sander M. Houten

2021 ◽  
Author(s):  
Vasiliki Koutsouveli ◽  
David Balgoma ◽  
Antonia Checa ◽  
Mikael Hedeland ◽  
Ana Riesgo ◽  
...  

Abstract Background Sponges contain an astounding diversity of lipids which serve in several biological functions, including yolk formation in their oocytes and the embryos. On animal reproduction, lipids constitute one of the main energy storage forms for the adult and the offspring. The study of lipid metabolism during reproduction can provide information on food-web dynamics and energetic needs of the populations in their habitats, however, there are no studies focusing on the lipid metabolism of sponges during seasonal reproduction. The deep-sea sponge Phakellia ventilabrum (Demospongiae, Bubarida) is a key species of North-Atlantic sponge grounds, but its reproductive biology is not known. In this study, we used histological sections, lipidome profiling (UHPLC-MS), and transcriptomic analysis (RNA-seq) with goal to i. assess the reproductive strategy and seasonality of this species, ii. examine the relative changes in the lipidome signal, and the gene expression patterns (RNA-seq) of enzymes participating in lipid metabolism in female specimens during gametogenesis.Results P. ventilabrum is an oviparous and most certainly gonochoristic species, reproducing in May and September in the different studied areas. Half of specimens were reproducing, generating two to five oocytes per mm2. Oocytes accumulated both protein and lipid droplets. As oogenesis progressed, the signal of most of the unsaturated and monounsaturated triacylglycerides increased, as well as of few other phospholipids. Most of the other lipids and especially those with > 3 unsaturations showed a decrease in signal during the oocyte maturation. In parallel, we detected upregulated genes in female tissues related to triacylglyceride biosynthesis and others related to fatty acid beta-oxidation.Conclusions Triacylglycerides are probably the main type of lipid forming the yolk since this lipid category has the most marked changes, while some other phospholipids may also have a role in oogenesis. In parallel, other lipid categories were oxidized, leading to fatty acid beta-oxidation to cover the energy requirements of female individuals during oogenesis. Variations in the signal of most lipids between the different locations and months suggest that sponges, apart from their own mechanisms of lipid biosynthesis, exploit the food availability in their surroundings to cover the energetic demands in their physiological processes.


2019 ◽  
Author(s):  
Jolanda M. van Munster ◽  
Paul Daly ◽  
Martin J. Blythe ◽  
Roger Ibbett ◽  
Matt Kokolski ◽  
...  

AbstractBackgroundUnderstanding how fungi degrade lignocellulose is a cornerstone of improving renewables-based biotechnology, in particular for the production of hydrolytic enzymes. Considerable progress has been made in investigating fungal degradation during time-points where CAZyme expression peaks. However, a robust understanding of the fungal survival strategies over its life time on lignocellulose is thereby missed. Here we aimed to uncover the physiological responses of the biotechnological workhorse and enzyme producer Aspergilllus niger over its life time to six substrates important for biofuel production.ResultsWe analysed the response of A. niger to the feedstock Miscanthus and compared it with our previous study on wheat straw, alone or in combination with hydrothermal or ionic liquid feedstock pretreatments. Conserved (substrate-independent) metabolic responses as well as those affected by pretreatment and feedstock were identified via multivariate analysis of genome-wide transcriptomics combined with targeted transcript and protein analyses and mapping to a metabolic model. Initial exposure to all substrates increased fatty acid beta-oxidation and lipid metabolism transcripts. In a strain carrying a deletion of the ortholog of the Aspergillus nidulans fatty acid beta-oxidation transcriptional regulator farA, there was a reduction in expression of selected lignocellulose degradative CAZyme-encoding genes suggesting that beta-oxidation contributes to adaptation to lignocellulose. Mannan degradation expression was wheat straw feedstock-dependent and pectin degradation was higher on the untreated substrates. In the later life stages, known and novel secondary metabolite gene clusters were activated, which are of high interest due to their potential to synthesize bioactive compounds.ConclusionIn this study, which includes the first transcriptional response of Aspergilli to Miscanthus, we highlighted that life time as well as substrate composition and structure (via variations in pretreatment and feedstock) influence the fungal responses to lignocellulose. We also demonstrated that the fungal response contains physiological stages that are conserved across substrates and are typically found outside of the conditions with high CAZyme expression, as exemplified by the stages that are dominated by lipid and secondary metabolism.


1989 ◽  
Vol 163 (1) ◽  
pp. 418-423 ◽  
Author(s):  
Nobuhiro Inatomi ◽  
Shinzo Kato ◽  
Daisuke Ito ◽  
Charles S. Lieber

2021 ◽  
Vol 1 (19) ◽  
pp. 268-269
Author(s):  
A.Yu. Skorokhodova ◽  
V.G. Debabov

The feasibility of the application of enforced ATP hydrolysis to ensure anaerobic functioning of Escherichia coli strain producing butyric acid through the inverted fatty acid beta-oxidation pathway as a full-cell biocatalyst has been demonstrated.


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