Machine-learning assisted antibiotic detection and categorization using a bacterial sensor array

2021 ◽  
pp. 131257
Author(s):  
Wei-Che Huang ◽  
Chin-Dian Wei ◽  
Shimshon Belkin ◽  
Tung-Han Hsieh ◽  
Ji-Yen Cheng
2021 ◽  
Vol 5 (1) ◽  
pp. 21
Author(s):  
Edgar G. Mendez-Lopez ◽  
Jersson X. Leon-Medina ◽  
Diego A. Tibaduiza

Electronic tongue type sensor arrays are made of different materials with the property of capturing signals independently by each sensor. The signals captured when conducting electrochemical tests often have high dimensionality, which increases when performing the data unfolding process. This unfolding process consists of arranging the data coming from different experiments, sensors, and sample times, thus the obtained information is arranged in a two-dimensional matrix. In this work, a description of a tool for the analysis of electronic tongue signals is developed. This tool is developed in Matlab® App Designer, to process and classify the data from different substances analyzed by an electronic tongue type sensor array. The data processing is carried out through the execution of the following stages: (1) data unfolding, (2) normalization, (3) dimensionality reduction, (4) classification through a supervised machine learning model, and finally (5) a cross-validation procedure to calculate a set of classification performance measures. Some important characteristics of this tool are the possibility to tune the parameters of the dimensionality reduction and classifier algorithms, and also plot the two and three-dimensional scatter plot of the features after reduced the dimensionality. This to see the data separability between classes and compatibility in each class. This interface is successfully tested with two electronic tongue sensor array datasets with multi-frequency large amplitude pulse voltammetry (MLAPV) signals. The developed graphical user interface allows comparing different methods in each of the mentioned stages to find the best combination of methods and thus obtain the highest values of classification performance measures.


Sensors ◽  
2020 ◽  
Vol 20 (16) ◽  
pp. 4552
Author(s):  
Pablo Gutiérrez ◽  
Sebastián E. Godoy ◽  
Sergio Torres ◽  
Patricio Oyarzún ◽  
Ignacio Sanhueza ◽  
...  

In this article we present the development of a biosensor system that integrates nanotechnology, optomechanics and a spectral detection algorithm for sensitive quantification of antibiotic residues in raw milk of cow. Firstly, nanobiosensors were designed and synthesized by chemically bonding gold nanoparticles (AuNPs) with aptamer bioreceptors highly selective for four widely used antibiotics in the field of veterinary medicine, namely, Kanamycin, Ampicillin, Oxytetracycline and Sulfadimethoxine. When molecules of the antibiotics are present in the milk sample, the interaction with the aptamers induces random AuNP aggregation. This phenomenon modifies the initial absorption spectrum of the milk sample without antibiotics, producing spectral features that indicate both the presence of antibiotics and, to some extent, its concentration. Secondly, we designed and constructed an electro-opto-mechanic device that performs automatic high-resolution spectral data acquisition in a wavelength range of 400 to 800 nm. Thirdly, the acquired spectra were processed by a machine-learning algorithm that is embedded into the acquisition hardware to determine the presence and concentration ranges of the antibiotics. Our approach outperformed state-of-the-art standardized techniques (based on the 520/620 nm ratio) for antibiotic detection, both in speed and in sensitivity.


2020 ◽  
Vol 213 ◽  
pp. 107771
Author(s):  
Wilmer Ariza Ramirez ◽  
Zhi Quan Leong ◽  
Hung Duc Nguyen ◽  
Shantha Gamini Jayasinghe

2020 ◽  
Vol 20 (11) ◽  
pp. 6020-6028 ◽  
Author(s):  
Md Ashfaque Hossain Khan ◽  
Brian Thomson ◽  
Ratan Debnath ◽  
Abhishek Motayed ◽  
Mulpuri V. Rao

Electronics ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 288 ◽  
Author(s):  
Luke Harrsion ◽  
Maryam Ravan ◽  
Dhara Tandel ◽  
Kunyi Zhang ◽  
Tanvi Patel ◽  
...  

In this paper, a novel methodology is proposed for material identification. It is based on the use of a microwave sensor array with the elements of the array resonating at various frequencies within a wide range and applying machine learning algorithms on the collected data. Unlike the previous microwave sensing systems which are mainly based on a single resonating sensor, the proposed methodology allows for material characterization over a wide frequency range which, in turn, improves the accuracy of the material identification procedure. The performance of the proposed methodology is tested via the use of easily available materials such as woods, cardboards, and plastics. However, the proposed methodology can be extended to other applications such as industrial liquid identification and composite material identification, among others.


Sensors ◽  
2020 ◽  
Vol 20 (9) ◽  
pp. 2687
Author(s):  
Toshio Itoh ◽  
Yutaro Koyama ◽  
Woosuck Shin ◽  
Takafumi Akamatsu ◽  
Akihiro Tsuruta ◽  
...  

We investigated the selective detection of target volatile organic compounds (VOCs) which are age-related body odors (namely, 2-nonenal, pelargonic acid, and diacetyl) and a fungal odor (namely, acetic acid) in the presence of interference VOCs from car interiors (namely, n-decane, and butyl acetate). We used eight semiconductive gas sensors as a sensor array; analyzing their signals using machine learning; principal-component analysis (PCA), and linear-discriminant analysis (LDA) as dimensionality-reduction methods; k-nearest-neighbor (kNN) classification to evaluate the accuracy of target-gas determination; and random forest and ReliefF feature selections to choose appropriate sensors from our sensor array. PCA and LDA scores from the sensor responses to each target gas with contaminant gases were generally within the area of each target gas; hence; discrimination between each target gas was nearly achieved. Random forest and ReliefF efficiently reduced the required number of sensors, and kNN verified the quality of target-gas discrimination by each sensor set.


2021 ◽  
Vol MA2021-01 (54) ◽  
pp. 1314-1314
Author(s):  
Unab Javed ◽  
Kannan Pasupathikovil Ramaiyan ◽  
Cortney R. Kreller ◽  
Eric L. Brosha ◽  
Rangachary Mukundan ◽  
...  

Author(s):  
Tao Wang ◽  
Hongli Ma ◽  
Wenkai Jiang ◽  
Hexin Zhang ◽  
Min Zeng ◽  
...  

Microwave-assisted method has been developed to synthesize ZnO gas sensing nanomaterials with controllable hierarchical structures. Machine learning algorithms such as PCA, SVM, ELM, and BP further improve the selectivity and quantitation.


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