Molecular typing and genetic relatedness of 72 clinical Candida albicans isolates from poultry

2018 ◽  
Vol 214 ◽  
pp. 36-43 ◽  
Author(s):  
Jianchai Liu ◽  
Huanzhang Liu ◽  
Jinkun Yan ◽  
Na Liu ◽  
Heping Zhang ◽  
...  
Keyword(s):  
Candida Albicans ◽  
Molecular Typing ◽  
Genetic Relatedness

scholarly journals Comparison of four molecular typing methods to assess genetic relatedness of Candida albicans clinical isolates in Taiwan

2005 ◽  
Vol 54 (3) ◽  
pp. 249-258 ◽  
Author(s):  
Kuo-Wei Chen ◽  
Hsiu-Jung Lo ◽  
Yu-Hui Lin ◽  
Shu-Ying Li
Keyword(s):  
Candida Albicans ◽  
Molecular Typing ◽  
Genetic Relatedness ◽  
Geographic Origin ◽  
Discriminatory Power ◽  
Patient Specific ◽  
High Discriminatory Power ◽  
Typing Methods ◽  
Pcr Method ◽  
Genetic Profiles

This report describes the investigation of the genetic profiles of 53 Candida albicans isolates collected from 18 hospitals in Taiwan using three PFGE-based typing methods (PFGE karyotyping, and PFGE of SfiI and BssHII restriction fragments) and one repetitive-sequence-PCR (rep-PCR) method. All four methods were able to identify clonal related isolates from the same patients. PFGE-BssHII exhibited the highest discriminatory power by discriminating 40 genotypes, followed by PFGE-SfiI (35 genotypes) and then by rep-PCR (31 genotypes), while PFGE karyotyping exhibited the lowest discriminatory power (19 genotypes). High discriminatory power can also be achieved by combining typing methods with different typing mechanisms, such as rep-PCR and PFGE-based typing methods. The results also showed that the genotype of each isolate was patient-specific and not associated with the source of the isolation, geographic origin or antifungal resistance.

An Outbreak of ESBL-producing Klebsiella pneumoniae in an Iranian Referral Hospital: Epidemiology and Molecular Typing

2019 ◽  
Vol 19 (1) ◽  
pp. 46-54 ◽  
Author(s):  
Shima Mahmoudi ◽  
Babak Pourakbari ◽  
Aliakbar Rahbarimanesh ◽  
Mohammad Reza Abdosalehi ◽  
Keyghobad Ghadiri ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Nosocomial Infections ◽  
Molecular Typing ◽  
Genetic Relatedness ◽  
Referral Hospital ◽  
Limited Information ◽  
Hospital Epidemiology ◽  
Rapd Pcr ◽  
Published Report ◽  
Random Amplification

Introduction: Klebsiella pneumoniae is a common cause of nosocomial infections; however, there is limited information in Iran regarding nosocomial outbreaks due to extended-spectrum β–lactamase (ESBL) producing K pneumoniae strains, particularly using molecular methods. The present study focused on the molecular mechanism of ESBL resistance and genetic relatedness in K. pneumoniae isolates causing nosocomial infections in an Iranian referral hospital. Material and Methods: This study evaluated the antimicrobial resistance and molecular epidemiology of K. pneumoniae causing nosocomial infections in children between October 2013 and March 2014. The ESBL detection was carried out for all the isolates by the CLSI method and PCR was carried out for the detection of the blaSHV, blaTEM, and blaCTX-M genes among ESBL-producing K. pneumonia. Molecular typing of the K. pneumoniae was performed using random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR). Results: A total of 30 isolates of K. pneumoniae were used for epidemiological analysis. High rates of resistance to cefotaxime (n=29, 97%), cefazolin (n=29, 97%), cefepime (n=25, 83%) and gentamicin (n=23, 77%) were observed. A total of 29 strains (97%) produced ESBLs. The frequency of blaSHV, blaCTX-M and blaTEM genes among these isolates was 83% (n=25), 70% (n=21) and 57% (n=17), respectively. Surprisingly 11 isolated (37%) carried blaSHV, blaCTX-M and blaTEM genes simultaneously. Moreover, the concurrent presence of “blaSHV and blaCTX-M” and “blaSHV and blaTEM” was seen in 8 (27%) and 4 (13%) isolates, respectively. RAPDPCR analyses revealed that K. pneumoniae isolates belonged to 2 RAPD-PCR types among which one cluster counted for 28 isolates. Conclusion: To our knowledge, this is the first published report of a nosocomial outbreak of ESBL-producing K. pneumoniae in children in Iran. Although the epidemiology of nosocomial infections with ESBL-producing organisms has not yet been explored in depth in Iran, our findings suggest that ESBL-producing organisms are already an established public health threat in our country.

Molecular typing of multi-drug resistant Candida albicans isolated from the Segamat community, Malaysia

2021 ◽  
Author(s):  
Marie Andrea Laetitia Huët ◽  
Nazmul Hasan Muzahid ◽  
Chuen Zhang Lee ◽  
Calvin Bok Sun Goh ◽  
Jacky Dwiyanto ◽  
...  
Keyword(s):  
Candida Albicans ◽  
Molecular Typing ◽  
Drug Resistant

scholarly journals Molecular Diversity and Genetic Relatedness of Candida albicans Isolates from Birds in Hungary

2021 ◽  
Vol 186 (2) ◽  
pp. 237-244
Author(s):  
M. Domán ◽  
L. Makrai ◽  
Gy. Lengyel ◽  
R. Kovács ◽  
L. Majoros ◽  
...  
Keyword(s):  
Candida Albicans ◽  
Molecular Diversity ◽  
Genetic Relatedness ◽  
Group Method ◽  
Pair Group ◽  
Degree Of Separation ◽  
Avian Origin ◽  
Species Specific ◽  
Sequence Types ◽  
Unweighted Pair Group Method

AbstractThe molecular epidemiology of Candida albicans infections in animals has been rarely studied. In this study, multilocus sequence typing was used to characterise the genetic diversity and population structure of 24 avian origin C. albicans isolates collected from different birds with candidiasis and compared to human isolates. Fourteen diploid sequence types (DSTs) including six new DSTs were determined. Cluster analysis revealed that isolates grouped into 8 clades. Bird isolates mainly belonged to minor clades and Clade 15 with DST 172 was the most common (11 isolates; 45.8%). The remaining isolates were clustered into Clade 7 (5 isolates; 20.8%), Clade 10 (4 isolates; 16.6%), Clade 8 (2 isolates; 8.3%), Clade 4 (1 isolate; 4.2%) and Clade 16 (1 isolate; 4.2%). Unweighted pair group method with arithmetic averages (UPGMA) and eBURST analyses showed that the genetic construction of avian origin C. albicans population is fairly diverse. Although species-specific lineages were not found, some degree of separation in the evolution of bird and human strains could be observed.

scholarly journals MOLECULAR TYPING OF Candida albicans ISOLATES FROM HOSPITALIZED PATIENTS

2013 ◽  
Vol 55 (6) ◽  
pp. 385-391 ◽  
Author(s):  
Patricia de Souza Bonfim-Mendonca ◽  
Adriana Fiorini ◽  
Cristiane Suemi Shinobu-Mesquita ◽  
Lilian Cristiane Baeza ◽  
Maria Aparecida Fernandez ◽  
...  
Keyword(s):  
Candida Albicans ◽  
Blood Culture ◽  
Genetic Variability ◽  
Molecular Typing ◽  
Fungal Infections ◽  
Common Origin ◽  
High Similarity ◽  
Candida Spp ◽  
Typing Methods ◽  
A Site

SUMMARY Introduction: The majority of nosocomial fungal infections are caused by Candida spp. where C. albicans is the species most commonly identified. Molecular methods are important tools for assessing the origin of the yeasts isolated in hospitals. Methods: This is a study on the genetic profifiles of 39 nosocomial clinical isolates of C. albicans using two typing methods: random amplifified polymorphic DNA (RAPD) and microsatellite, two different primers for each technique were used. Results: RAPD provided 10 and 11 different profiles with values for SAB of 0.84 ± 0.126 and 0.88 ± 0.08 for primers M2 and P4, respectively. Microsatellite using two markers, CDC3 and HIS3, allowed the observation of six and seven different alleles, respectively, with combined discriminatory power of 0.91. Conclusions: Although genetic variability is clear, it was possible to identify high similarity, suggesting a common origin for at least a part of isolates. It is important to emphasize that common origin was proven from yeasts isolated from colonization (urine, catheter or endotracheal secretions) and blood culture from the same patient, indicating that the candidemia must have started from a site of colonization. The combination of RAPD and microsatellite provides a quick and efficient analysis for investigation of similarity among nosocomial isolates of C. albicans.

scholarly journals Molecular epidemiology of long-term colonization of Candida albicans strains from HIV-infected patients

2005 ◽  
Vol 134 (2) ◽  
pp. 265-269 ◽  
Author(s):  
S. Y. LI ◽  
Y. L. YANG ◽  
K. W. CHEN ◽  
H. H. CHENG ◽  
C. S. CHIOU ◽  
...  
Keyword(s):  
Candida Albicans ◽  
Genetic Relatedness ◽  
Pulsed Field Gel Electrophoresis ◽  
Small Scale ◽  
Dna Fingerprints ◽  
Fluconazole Resistance ◽  
Oral Colonization ◽  
Dose Dependent ◽  
Swab Specimen

Twenty-one Candida albicans isolates from three HIV-infected patients were collected over a period of 3 years and characterized for fluconazole susceptibility, infectivity and genetic relatedness. Fluconazole resistance was found in five isolates, four exhibited dose-dependent susceptibility and the remainder were fully susceptible to this agent. Pulsed-field gel electrophoresis of SfiI restriction digests of the genomic DNA from the isolates revealed that isolates from the same swab specimen were identical despite differences in susceptibility to fluconazole and isolates recovered over time from the three patients retained clonally related DNA fingerprints within each patient. This small-scale study confirms the persistence of oral colonization of C. albicans strains in HIV-infected patients. Clinical data also suggests that the primary infecting strain may become a persistent colonist in the oral cavity once the immune function of the patient has been restored.

scholarly journals Evaluation of BOX-PCR and ERIC-PCR as Molecular Typing Tools for PathogenicLeptospira

2018 ◽  
Vol 2018 ◽  
pp. 1-9 ◽  
Author(s):  
Lesley Maurice Bilung ◽  
Chai Fung Pui ◽  
Lela Su’ut ◽  
Kasing Apun
Keyword(s):  
Genetic Distance ◽  
Molecular Typing ◽  
Genetic Relatedness ◽  
Mortality Rates ◽  
Health Concern ◽  
Public Health Concern ◽  
Zoonotic Pathogen ◽  
Future Studies ◽  
Typing Methods ◽  
Discriminatory Index

In the last decades, leptospirosis had gained public health concern due to morbidity and mortality rates caused by pathogenicLeptospira. The need for rapid and robust molecular typing methods to differentiate this zoonotic pathogen is of utmost importance. Various studies had been conducted to determine the genetic relatedness ofLeptospiraisolates using molecular typing methods. In this study, 29 pathogenicLeptospiraisolates from rat, soil, and water samples in Sarawak, Malaysia, were characterized using BOX-PCR and ERIC-PCR. The effectiveness of these two methods with regard to the ease of interpretation, reproducibility, typeability, and discriminatory power was also being evaluated. Using BOX-PCR, six clusters and 3 single isolates were defined at a genetic distance percentage of 11.2%. ERIC-PCR clustered the isolates into 6 clusters and 2 single isolates at a genetic distance percentage of 6.8%. Both BOX-PCR and ERIC-PCR produced comparable results though the discriminatory index for ERIC-PCR (0.826) was higher than that for BOX-PCR (0.809). From the constructed dendrogram, it could be summarized that the isolates in this study were highly heterogeneous and genetically diverse. The findings from this study indicated that there is no genetic relatedness among the pathogenicLeptospiraisolates in relation to the locality, source, and identity, with some exceptions. Out of the 29 pathogenicLeptospiraisolates studied, BOX-PCR and ERIC-PCR successfully discriminated 4 isolates (2 isolates each) into the same cluster in relation to sample sources, as well as 2 isolates into the same cluster in association with the sample locality. Future studies shall incorporate the use of other molecular typing methods to make a more thorough comparison on the genetic relatedness of pathogenicLeptospira.

Multidrug-resistant organisms in a routine ward environment: differential propensity for environmental dissemination and implications for infection control

2013 ◽  
Vol 62 (5) ◽  
pp. 766-772 ◽  
Author(s):  
Thean Yen Tan ◽  
Jasmine Shi Min Tan ◽  
Huiyi Tay ◽  
Gek Hong Chua ◽  
Lily Siew Yong Ng ◽  
...  
Keyword(s):  
Infection Control ◽  
Molecular Typing ◽  
Healthcare Professionals ◽  
Genetic Relatedness ◽  
Healthcare Setting ◽  
Multidrug Resistant ◽  
Carbapenem Resistant ◽  
High Prevalence ◽  
Multidrug Resistant Organisms ◽  
Isolation Facilities

Multidrug-resistant organisms (MDROs) pose significant infection-control challenges in settings with high prevalence and limited isolation facilities. This observational study in an 800-bed hospital determined the prevalence, bacterial density and genetic relatedness of MDROs isolated from ward surfaces, medical devices and the hands of healthcare professionals. The targeted MDROs were meticillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant enterococci (VRE), Escherichia coli and Klebsiella pneumoniae resistant to extended-spectrum cephalosporins, and carbapenem-resistant (CR) Acinetobacter baumannii. During a 2-month period, microbiological sampling and molecular typing were performed on environment isolates, clinical isolates and isolates recovered from the hands of healthcare professionals. The target MDROs were recovered from 79 % of sampled surfaces, predominantly MRSA (74 % of all tested surfaces) and CR A. baumannii (29 %) but also VRE (2 %) and K. pneumoniae (1 %). MRSA was recovered from most tested surfaces throughout the ward, whilst CR A. baumannii was significantly more likely to be recovered from near-patient surfaces. Hand sampling demonstrated infrequent recovery of MRSA (5 %), CR A. baumannii (1 %) and VRE (1 %). Molecular typing of the study isolates identified seven MRSA and five Acinetobacter clonal clusters, respectively, and typing identified similar strains from the environment, patients and hands. Thus, in a healthcare setting with endemic circulation of MDROs, MRSA and CR A. baumannii were the predominant organisms recovered from ward surfaces, with MRSA in particular demonstrating widespread environmental dissemination. Molecular typing demonstrated the presence of related strains in patients, in the environment and on the hands of healthcare workers.

scholarly journals Hospital Specificity, Region Specificity, and Fluconazole Resistance of Candida albicans Bloodstream Isolates

1998 ◽  
Vol 36 (6) ◽  
pp. 1518-1529 ◽  
Author(s):  
M. A. Pfaller ◽  
S. R. Lockhart ◽  
C. Pujol ◽  
J. A. Swails-Wenger ◽  
S. A. Messer ◽  
...  
Keyword(s):  
United States ◽  
Drug Resistance ◽  
Candida Albicans ◽  
Genetic Relatedness ◽  
Computer Assisted ◽  
Specific Probe ◽  
Fluconazole Resistance ◽  
Fluconazole Resistant ◽  
Species Specific ◽  
Close Genetic Relationship

In a survey of bloodstream infection (BSI) isolates across the continental United States, 162 Candida albicans isolates were fingerprinted with the species-specific probe Ca3 and the patterns were analyzed for relatedness with a computer-assisted system. The results demonstrate that particular BSI strains are more highly concentrated in particular geographic locales and that established BSI strains are endemic in some, but not all, hospitals in the study and undergo microevolution in hospital settings. The results, however, indicate no close genetic relationship among fluconazole-resistant BSI isolates in the collection, either from the same geographic locale or the same hospital. This study represents the first of three fingerprinting studies designed to analyze the origin, genetic relatedness, and drug resistance of Candida isolates responsible for BSI.

Sign in / Sign up

Export Citation Format

Share Document