scholarly journals High gene space divergence contrasts with frozen vegetative architecture in the moss family Funariaceae

2021 ◽  
Vol 154 ◽  
pp. 106965
Author(s):  
Nasim Rahmatpour ◽  
Neranjan V. Perera ◽  
Vijender Singh ◽  
Jill L. Wegrzyn ◽  
Bernard Goffinet
Keyword(s):  
Gene Space ◽  
High Gene

scholarly journals High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba

2015 ◽  
Vol 32 (5) ◽  
pp. 1284-1295 ◽  
Author(s):  
Lorenzo Carretero-Paulet ◽  
Pablo Librado ◽  
Tien-Hao Chang ◽  
Enrique Ibarra-Laclette ◽  
Luis Herrera-Estrella ◽  
...  
Keyword(s):  
Gene Family ◽  
Carnivorous Plant ◽  
Turnover Rates ◽  
Gene Space ◽  
High Gene ◽  
Utricularia Gibba ◽  
Space Adaptation

scholarly journals Analysis of thepdx-1(snz-1/sno-1) Region of theNeurospora crassaGenome: Correlation of Pyridoxine-Requiring Phenotypes With Mutations in Two Structural Genes

Genetics ◽  
2001 ◽  
Vol 157 (3) ◽  
pp. 1067-1075 ◽  
Author(s):  
Laura E Bean ◽  
William H Dvorachek ◽  
Edward L Braun ◽  
Allison Errett ◽  
Gregory S Saenz ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Stationary Phase ◽  
Neurospora Crassa ◽  
Vitamin B6 ◽  
Structural Genes ◽  
Protein Coding ◽  
Previous Conclusion ◽  
Protein Coding Genes ◽  
Shared Function ◽  
High Gene

AbstractWe report the analysis of a 36-kbp region of the Neurospora crassa genome, which contains homologs of two closely linked stationary phase genes, SNZ1 and SNO1, from Saccharomyces cerevisiae. Homologs of SNZ1 encode extremely highly conserved proteins that have been implicated in pyridoxine (vitamin B6) metabolism in the filamentous fungi Cercospora nicotianae and in Aspergillus nidulans. In N. crassa, SNZ and SNO homologs map to the region occupied by pdx-1 (pyridoxine requiring), a gene that has been known for several decades, but which was not sequenced previously. In this study, pyridoxine-requiring mutants of N. crassa were found to possess mutations that disrupt conserved regions in either the SNZ or SNO homolog. Previously, nearly all of these mutants were classified as pdx-1. However, one mutant with a disrupted SNO homolog was at one time designated pdx-2. It now appears appropriate to reserve the pdx-1 designation for the N. crassa SNZ homolog and pdx-2 for the SNO homolog. We further report annotation of the entire 36,030-bp region, which contains at least 12 protein coding genes, supporting a previous conclusion of high gene densities (12,000-13,000 total genes) for N. crassa. Among genes in this region other than SNZ and SNO homologs, there was no evidence of shared function. Four of the genes in this region appear to have been lost from the S. cerevisiae lineage.

scholarly journals Human Cystic Echinococcosis in Lebanon: A Retrospective Study and Molecular Epidemiology

2021 ◽  
Author(s):  
Gaelle Joanny ◽  
Maria Grazia Cappai ◽  
Francesca Nonnis ◽  
Claudia Tamponi ◽  
Giorgia Dessì ◽  
...  
Keyword(s):  
Echinococcus Granulosus ◽  
Cystic Echinococcosis ◽  
Epidemiological Data ◽  
Sensu Stricto ◽  
Control Measures ◽  
Mediterranean Countries ◽  
High Gene ◽  
Human Infections ◽  
And Control ◽  
Human Cystic Echinococcosis

Abstract Purpose Human cystic echinococcosis (CE) is a zoonotic parasitic disease that constitutes a public health challenge and a socio-economic burden in endemic areas worldwide. No specific surveillance system of CE infections in humans exists in Lebanon. The incidence and trends over time have not been documented. The current study aimed to assess the demographic and epidemiologic features of human CE surgical cases over a 14-year period in the five main regions of Lebanon. Methods From 2005 to 2018, a total of 894 surgically confirmed cases of hydatidosis were recorded from five anatomy and pathology laboratories. Results The mean annual surgical incidence was 1.23/100,000 inhabitants. Over the span of these years, the incidence increased from 0.53 to 1.94 cases/100,000 inhabitants in 2005 and 2018, respectively. CE is present in Lebanon with an uneven distribution from one region to the other with higher prevalence in Bekaa (29.0%), a rural area where sheep raising is widespread. Human CE cases were more common in females (60.1%) than in males (39.9%) and a high burden of infection was reported for the age group of 30–39 years. Besides, 66.7% of the cases expressed only liver complications whereas, 20.5% showed predilection towards lungs. The 7.8% of cases presented cysts in other organs, and 1.3% showed multiple localizations. Additionally, predominant involvement of Echinococcus granulosus sensu stricto was recorded in human infections. Comparison of Echinococcus granulosus s.s. populations from different Mediterranean countries also revealed high gene flow among this region and sharing of alleles. Conclusion The current study is a step forward to fill the gap of knowledge for the hydatidosis in Lebanon where the lack of epidemiological data and control measures have resulted in higher incidence of human CE. Graphic Abstract

scholarly journals MOLECULAR MAPPING OF A GENE CLUSTER FLANKING THE DROSOPHILA DOPA DECARBOXYLASE GENE

Genetics ◽  
1984 ◽  
Vol 106 (4) ◽  
pp. 679-694
Author(s):  
Denise Gilbert ◽  
Jay Hirsh ◽  
T R F Wright
Keyword(s):  
Gene Cluster ◽  
Molecular Mapping ◽  
Gene Density ◽  
Dopa Decarboxylase ◽  
Chromosomal Dna ◽  
Potential Significance ◽  
High Gene ◽  
Complementation Groups ◽  
High Gene Density

ABSTRACT Nine lethal complementation groups flanking the Drosophila Dopa decarboxylase (Ddc) gene, have been localized within 100 kb of cloned chromosomal DNA. Six of these complementation groups are within 23 kb of DNA, and all ten complementation groups, including Ddc, lie within 78-82 kb of DNA. The potential significance of this unusually high gene density is discussed.

scholarly journals Retained Heterodisomy Is Associated with High Gene Expression in Hyperhaploid Inflammatory Leiomyosarcoma

Neoplasia ◽  
2012 ◽  
Vol 14 (9) ◽  
pp. 807-IN5 ◽  
Author(s):  
Karolin H. Nord ◽  
Kajsa Paulsson ◽  
Srinivas Veerla ◽  
Johan Wejde ◽  
Otte Brosjö ◽  
...  
Keyword(s):  
Gene Expression ◽  
High Gene Expression ◽  
High Gene

scholarly journals Dispersal and Differentiation of Deep-Sea Mussels of the GenusBathymodiolus(Mytilidae, Bathymodiolinae)

2009 ◽  
Vol 2009 ◽  
pp. 1-15 ◽  
Author(s):  
Akiko Kyuno ◽  
Mifue Shintaku ◽  
Yuko Fujita ◽  
Hiroto Matsumoto ◽  
Motoo Utsumi ◽  
...  
Keyword(s):  
Gene Flow ◽  
Genetic Differentiation ◽  
Shallow Water ◽  
Deep Sea ◽  
Dispersal Ability ◽  
Evolutionary Transition ◽  
Significant Genetic Differentiation ◽  
Evolutionary Processes ◽  
High Dispersal ◽  
High Gene

We sequenced the mitochondrial ND4 gene to elucidate the evolutionary processes ofBathymodiolusmussels and mytilid relatives. Mussels of the subfamily Bathymodiolinae from vents and seeps belonged to 3 groups and mytilid relatives from sunken wood and whale carcasses assumed the outgroup positions to bathymodioline mussels. Shallow water mytilid mussels were positioned more distantly relative to the vent/seep mussels, indicating an evolutionary transition from shallow to deep sea via sunken wood and whale carcasses.Bathymodiolus platifronsis distributed in the seeps and vents, which are approximately 1500 km away. There was no significant genetic differentiation between the populations. There existed high gene flow betweenB. septemdierumandB. breviorand low but not negligible gene flow betweenB. marisindicusandB. septemdierumorB. brevior, although their habitats are 5000–10 000 km away. These indicate a high adaptability to the abyssal environments and a high dispersal ability ofBathymodiolusmussels.

High gene flow through pollen partially compensates spatial limited gene flow by seeds for a Neotropical tree in forest conservation and restoration areas

2021 ◽  
Author(s):  
Patricia Sanae Sujii ◽  
Evandro Vagner Tambarussi ◽  
Carolina Grando ◽  
Ellida de Aguiar Silvestre ◽  
João Paulo Gomes Viana ◽  
...  
Keyword(s):  
Gene Flow ◽  
Forest Conservation ◽  
Neotropical Tree ◽  
High Gene Flow ◽  
High Gene ◽  
Limited Gene Flow ◽  
Flow Through

scholarly journals Saturation Mapping of a Gene-Rich Recombination Hot Spot Region in Wheat

Genetics ◽  
2000 ◽  
Vol 154 (2) ◽  
pp. 823-835 ◽  
Author(s):  
Justin D Faris ◽  
Karri M Haen ◽  
Bikram S Gill
Keyword(s):  
Positional Cloning ◽  
Physical Map ◽  
Hot Spot ◽  
Chromosome Breakage ◽  
Small Chromosome ◽  
Gene Density ◽  
Chromosome 5B ◽  
High Gene ◽  
The Many ◽  
Recombination Hot Spots

AbstractPhysical mapping of wheat chromosomes has revealed small chromosome segments of high gene density and frequent recombination interspersed with relatively large regions of low gene density and infrequent recombination. We constructed a detailed genetic and physical map of one highly recombinant region on the long arm of chromosome 5B. This distally located region accounts for 4% of the physical size of the long arm and at least 30% of the recombination along the entire chromosome. Multiple crossovers occurred within this region, and the degree of recombination is at least 11-fold greater than the genomic average. Characteristics of the region such as gene order and frequency of recombination appear to be conserved throughout the evolution of the Triticeae. The region is more prone to chromosome breakage by gametocidal gene action than gene-poor regions, and evidence for genomic instability was implied by loss of gene collinearity for six loci among the homeologous regions. These data suggest that a unique level of chromatin organization exists within gene-rich recombination hot spots. The many agronomically important genes in this region should be accessible by positional cloning.

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