Scanning transmission proton microscopy of human metaphase chromosomes at low resolution: No catastrophic damage

1975 ◽  
Vol 1 (1) ◽  
pp. 79-82 ◽  
Author(s):  
W.H. Escovitz ◽  
T.R. Fox ◽  
R. Levi-Setti
Author(s):  
Shawn Williams ◽  
Xiaodong Zhang ◽  
Susan Lamm ◽  
Jack Van’t Hof

The Scanning Transmission X-ray Microscope (STXM) is well suited for investigating metaphase chromosome structure. The absorption cross-section of soft x-rays having energies between the carbon and oxygen K edges (284 - 531 eV) is 6 - 9.5 times greater for organic specimens than for water, which permits one to examine unstained, wet biological specimens with resolution superior to that attainable using visible light. The attenuation length of the x-rays is suitable for imaging micron thick specimens without sectioning. This large difference in cross-section yields good specimen contrast, so that fewer soft x-rays than electrons are required to image wet biological specimens at a given resolution. But most imaging techniques delivering better resolution than visible light produce radiation damage. Soft x-rays are known to be very effective in damaging biological specimens. The STXM is constructed to minimize specimen dose, but it is important to measure the actual damage induced as a function of dose in order to determine the dose range within which radiation damage does not compromise image quality.


1993 ◽  
Vol 170 (2) ◽  
pp. 155-165 ◽  
Author(s):  
S. WILLIAMS ◽  
X. ZHANG ◽  
C. JACOBSEN ◽  
J. KIRZ ◽  
S. LINDAAS ◽  
...  

Author(s):  
William H. Escovitz ◽  
Timothy R. Fox ◽  
Riccardo Levi-Setti

Radiation damage of biological specimens has become a great concern of scientists in high resolution microscopy. Although modern refinements have pushed the ultimate resolution of microscopes below 5Å, specimen damage and preparation techniques have thwarted the realization of this resolution in biological molecules near their natural states. Because Scanning Transmission Ion Microscopy (STIM) with protons is thought to be much more damaging than electron microscopy, critics have doubted the applicability of proton microscopy to biological research, especially at high resolution. As a first step in exploring proton-beam induced damage in biological material, whole-mount chromosomes have been imaged at low resolution by proton microscopy for the first time. After prolonged proton irradiation, the same chromosomes were examined by Conventional Transmission Electron Microscopy (CTEM).Figure 1 is a bright-field proton micrograph of a chromosome obtained from human peripheral lymphocytes. The specimen, prepared by Dr. H. M. Golomb, is unstained and critical-point dried.


Author(s):  
S. Williams ◽  
C. Jacobsen ◽  
J. Kirz ◽  
S. S. Lamm ◽  
J. Van’t Hof ◽  
...  

Previous measurements of the composition of metaphase chromosomes yield values for the DNA mass fraction ranging from 15 - 32% (eg. 1), with a factor of two variation seen for chromosomes of a single species. The factors responsible for this variation are not known, but understanding them is of fundamental importance for constructing a realistic model of metaphase chromosome structure. The Scanning Transmission X-ray Microscope (STXM) provides the ability to make quantitative measurements of unstained, unfixed, thick wet specimens with a resolution of 55 nm. We have used the STXM to measure the total mass, density, size and shape of fixed wet chromosomes from three plant species and one marsupial species with differing amounts of DNA per chromosome. These measurements allow us to determine the dependence of chromosome composition on the amount of DNA per chromosome, and to determine whether chromosome composition differs between the plant and animal kingdoms.Metaphase chromosomes from the broad bean Vicia faba had a measured DNA mass fraction of 0.38. This value was obtained from both wet and freezedried specimens although the size and shape of the chromosomes resulting from these different treatments varied considerably (Fig. 1). This result indicates that the DNA mass fraction value obtained is not a property of the preparation procedure. Because dry specimens are not subject to mass loss at these exposure levels, the mass results for both the wet and dry specimens is not an artifact caused by radiation damage.


Author(s):  
A. V. Crewe

The high resolution STEM is now a fact of life. I think that we have, in the last few years, demonstrated that this instrument is capable of the same resolving power as a CEM but is sufficiently different in its imaging characteristics to offer some real advantages.It seems possible to prove in a quite general way that only a field emission source can give adequate intensity for the highest resolution^ and at the moment this means operating at ultra high vacuum levels. Our experience, however, is that neither the source nor the vacuum are difficult to manage and indeed are simpler than many other systems and substantially trouble-free.


Author(s):  
J. S. Wall ◽  
J. P. Langmore ◽  
H. Isaacson ◽  
A. V. Crewe

The scanning transmission electron microscope (STEM) constructed by the authors employs a field emission gun and a 1.15 mm focal length magnetic lens to produce a probe on the specimen. The aperture size is chosen to allow one wavelength of spherical aberration at the edge of the objective aperture. Under these conditions the profile of the focused spot is expected to be similar to an Airy intensity distribution with the first zero at the same point but with a peak intensity 80 per cent of that which would be obtained If the lens had no aberration. This condition is attained when the half angle that the incident beam subtends at the specimen, 𝛂 = (4𝛌/Cs)¼


Author(s):  
L. Gandolfi ◽  
J. Reiffel

Calculations have been performed on the contrast obtainable, using the Scanning Transmission Electron Microscope, in the observation of thick specimens. Recent research indicates a revival of an earlier interest in the observation of thin specimens with the view of comparing the attainable contrast using both types of specimens.Potential for biological applications of scanning transmission electron microscopy has led to a proliferation of the literature concerning specimen preparation methods and the controversy over “to stain or not to stain” in combination with the use of the dark field operating mode and the same choice of technique using bright field mode of operation has not yet been resolved.


Author(s):  
J. M. Cowley

The comparison of scanning transmission electron microscopy (STEM) with conventional transmission electron microscopy (CTEM) can best be made by means of the Reciprocity Theorem of wave optics. In Fig. 1 the intensity measured at a point A’ in the CTEM image due to emission from a point B’ in the electron source is equated to the intensity at a point of the detector, B, due to emission from a point A In the source In the STEM. On this basis it can be demonstrated that contrast effects In the two types of instrument will be similar. The reciprocity relationship can be carried further to include the Instrument design and experimental procedures required to obtain particular types of information. For any. mode of operation providing particular information with one type of microscope, the analagous type of operation giving the same information can be postulated for the other type of microscope. Then the choice between the two types of instrument depends on the practical convenience for obtaining the required Information.


Author(s):  
James F. Hainfeld ◽  
Kyra M. Alford ◽  
Mathias Sprinzl ◽  
Valsan Mandiyan ◽  
Santa J. Tumminia ◽  
...  

The undecagold (Au11) cluster was used to covalently label tRNA molecules at two specific ribonucleotides, one at position 75, and one at position 32 near the anticodon loop. Two different Au11 derivatives were used, one with a monomaleimide and one with a monoiodacetamide to effect efficient reactions.The first tRNA labeled was yeast tRNAphe which had a 2-thiocytidine (s2C) enzymatically introduced at position 75. This was found to react with the iodoacetamide-Aun derivative (Fig. 1) but not the maleimide-Aun (Fig. 2). Reaction conditions were 37° for 16 hours. Addition of dimethylformamide (DMF) up to 70% made no improvement in the labeling yield. A high resolution scanning transmission electron micrograph (STEM) taken using the darkfield elastically scattered electrons is shown in Fig. 3.


Author(s):  
H. Koike ◽  
S. Sakurai ◽  
K. Ueno ◽  
M. Watanabe

In recent years, there has been increasing demand for higher voltage SEMs, in the field of surface observation, especially that of magnetic domains, dislocations, and electron channeling patterns by backscattered electron microscopy. On the other hand, the resolution of the CTEM has now reached 1 ∼ 2Å, and several reports have recently been made on the observation of atom images, indicating that the ultimate goal of morphological observation has beem nearly achieved.


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