Phylogenetic and ecomorphologic diversifications of spiriferinid brachiopods after the end-Permian extinction

AbstractThe Order Spiriferinida spanning the latest Ordovician to Early Jurassic is a small group of brachiopods overshadowed by other taxon-rich clades during the Paleozoic. It diversified significantly after the end-Permian extinction and became one of the four major clades of Triassic brachiopods. However, the phylogeny and recovery dynamics of this clade during the Triassic still remain unknown. Here, we present a higher-level parsimony-based phylogenetic analysis of Mesozoic spiriferinids to reveal their evolutionary relationships. Ecologically related characters are analyzed to indicate the variances in ecomorphospace occupation and disparity of spiriferinids through the Permian–Triassic (P-Tr) transition. For comparison with potential competitors of the spiriferinids, the pre-extinction spiriferids are also included in the analysis. Phylogenetic trees demonstrate that about half of the Mesozoic families appeared during the Anisian, indicating the greatest phylogenetic diversification at that time. Triassic spiriferinids reoccupied a large part of the ecomorphospace released by its competitor spiriferids during the end-Permian extinction; they also fully exploited the cyrtiniform region and developed novel lifestyles. Ecomorphologic disparity of the spiriferinids dropped greatly in the Early Triassic, but it rebounded rapidly and reached the level attained by the pre-extinction spiriferids in the Late Triassic. The replacement in ecomorphospace occupation between spiriferids and spiriferinids during the P-Tr transition clearly indicates that the empty ecomorphospace released by the extinction of Permian spiriferids was one of the important drivers for the diversification of the Triassic spiriferinids. The Spiriferinida took over the empty ecomorphospace and had the opportunity to flourish.

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New insights on the early Mesozoic evolution of multiple tectonic regimes in the northeastern North China Craton from the detrital zircon provenance of sedimentary strata

Solid Earth ◽

10.5194/se-9-1375-2018 ◽

2018 ◽

Vol 9 (6) ◽

pp. 1375-1397 ◽

Cited By ~ 12

Author(s):

Yi Ni Wang ◽

Wen Liang Xu ◽

Feng Wang ◽

Xiao Bo Li

Keyword(s):

North China Craton ◽

North China ◽

Early Jurassic ◽

Orogenic Belt ◽

Detrital Zircons ◽

Late Triassic ◽

Early Triassic ◽

The South ◽

The North ◽

Early Mesozoic

Abstract. To investigate the timing of deposition and provenance of early Mesozoic strata in the northeastern North China Craton (NCC) and to understand the early Mesozoic paleotectonic evolution of the region, we combine stratigraphy, U–Pb zircon geochronology, and Hf isotopic analyses. Early Mesozoic strata include the Early Triassic Heisonggou, Late Triassic Changbai and Xiaoyingzi, and Early Jurassic Yihe formations. Detrital zircons in the Heisonggou Formation yield ∼ 58 % Neoarchean to Paleoproterozoic ages and ∼ 42 % Phanerozoic ages and were sourced from areas to the south and north of the basins within the NCC, respectively. This indicates that Early Triassic deposition was controlled primarily by the southward subduction of the Paleo-Asian oceanic plate beneath the NCC and collision between the NCC and the Yangtze Craton (YC). Approximately 88 % of the sediments within the Late Triassic Xiaoyingzi Formation were sourced from the NCC to the south, with the remaining ∼ 12 % from the Xing'an–Mongolia Orogenic Belt (XMOB) to the north. This implies that Late Triassic deposition was related to the final closure of the Paleo-Asian Ocean during the Middle Triassic and the rapid exhumation of the Su–Lu Orogenic Belt between the NCC and YC. In contrast, ∼ 88 % of sediments within the Early Jurassic Yihe Formation were sourced from the XMOB to the north, with the remaining ∼ 12 % from the NCC to the south. We therefore infer that rapid uplift of the XMOB and the onset of the subduction of the Paleo-Pacific Plate beneath Eurasia occurred in the Early Jurassic.

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A review of Palaeozoic and Mesozoic tetrapods from Greenland

Bulletin of the Geological Society of Denmark ◽

10.37570/bgsd-2018-66-02 ◽

2018 ◽

Vol 66 ◽

pp. 21-46 ◽

Cited By ~ 2

Author(s):

Marco Marzola ◽

Octávio Mateus ◽

Jesper Milàn ◽

Lars B. Clemmensen

Keyword(s):

Late Jurassic ◽

Early Jurassic ◽

Late Carboniferous ◽

Late Triassic ◽

Late Devonian ◽

Early Triassic ◽

Shallow Marine ◽

East Greenland ◽

Marine Deposits ◽

Theropod Dinosaurs

This article presents a synthesis of Palaeozoic and Mesozoic fossil tetrapods from Greenland, including an updated review of the holotypes and a new photographic record of the main specimens. All fossil tetrapods found are from East Greenland, with at least 30 different known taxa: five stem tetrapods (Acanthostega gunnari, Ichthyostega eigili, I. stensioi, I. watsoni, and Ymeria denticulata) from the Late Devonian of the Aina Dal and Britta Dal Formations; four temnospondyl amphibians (Aquiloniferus kochi, Selenocara groenlandica, Stoschiosaurus nielseni, and Tupilakosaurus heilmani) from the Early Triassic of the Wordie Creek Group; two temnospondyls (Cyclotosaurus naraserluki and Gerrothorax cf. pulcherrimus), one testudinatan (cf. Proganochelys), two stagonolepids (Aetosaurus ferratus and Paratypothorax andressorum), the eudimorphodontid Arcticodactylus, undetermined archosaurs (phytosaurs and both sauropodomorph and theropod dinosaurs), the cynodont Mitredon cromptoni, and three mammals (Haramiyavia clemmenseni, Kuehneotherium, and cf. ?Brachyzostrodon), from the Late Triassic of the Fleming Fjord Formation; one plesiosaur from the Early Jurassic of the Kap Stewart Formation; one plesiosaur and one ichthyosaur from the Late Jurassic of the Kap Leslie Formation, plus a previously unreported Late Jurassic plesiosaur from Kronprins Christian Land. Moreover, fossil tetrapod trackways are known from the Late Carboniferous (morphotype Limnopus) of the Mesters Vig Formation and at least four different morphologies (such as the crocodylomorph Brachychirotherium, the auropodomorph Eosauropus and Evazoum, and the theropodian Grallator) associated to archosaurian trackmakers are known from the Late Triassic of the Fleming Fjord Formation. The presence of rich fossiliferous tetrapod sites in East Greenland is linked to the presence of well-exposed continental and shallow marine deposits with most finds in terrestrial deposits from the Late Devonian and the Late Triassic.

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Perspectives on the Evolution and Diversification of the Diatoms

The Paleontological Society Papers ◽

10.1017/s1089332600001431 ◽

2007 ◽

Vol 13 ◽

pp. 1-12 ◽

Cited By ~ 2

Author(s):

Matthew L. Julius

Keyword(s):

Molecular Clock ◽

Fossil Record ◽

Early Jurassic ◽

Late Triassic ◽

Evolutionary Relationships ◽

Data Sets ◽

Diatom Species ◽

Generic Level ◽

Existing Data

The understanding of diatom evolution has progressed greatly over the last two decades. Existing data sets have been reanalyzed, new data sets have been generated, and new tools have been employed. Hindering progress is the seemingly endless number of diatom species remaining to be described and relative small number of investigators active in the field. This problem is further confounded by the dramatic reorganization of generic level classification in the group. Despite these problems, many conclusions can be made about prior hypotheses concerning the group's development. Most notably, the origin of the diatoms can be bracketed between the Late Triassic and Early Jurassic using fossil record and molecular clock estimates. This combination of techniques has also provided consensus and clarification to the origin and duration of specific lineages enhancing our understanding of the group's diversification, early ecology, and evolutionary relationships.

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Novel Molecular Synapomorphies Demarcate Different Main Groups/Subgroups of Plasmodium and Piroplasmida Species Clarifying Their Evolutionary Relationships

Genes ◽

10.3390/genes10070490 ◽

2019 ◽

Vol 10 (7) ◽

pp. 490 ◽

Cited By ~ 1

Author(s):

Sharma ◽

Gupta

Keyword(s):

Phylogenetic Analysis ◽

Phylogenetic Trees ◽

Plasmodium Species ◽

Protein Sequences ◽

Evolutionary Relationships ◽

Major Life ◽

Comparative Analyses ◽

Large Numbers ◽

Conserved Signature Indels ◽

Relationship Of

The class Hematozoa encompasses several clinically important genera, including Plasmodium, whose members cause the major life-threating disease malaria. Hence, a good understanding of the interrelationships of organisms from this class and reliable means for distinguishing them are of much importance. This study reports comprehensive phylogenetic and comparative analyses on protein sequences on the genomes of 28 hematozoa species to understand their interrelationships. In addition to phylogenetic trees based on two large datasets of protein sequences, detailed comparative analyses were carried out on the genomes of hematozoa species to identify novel molecular synapomorphies consisting of conserved signature indels (CSIs) in protein sequences. These studies have identified 79 CSIs that are exclusively present in specific groups of Hematozoa/Plasmodium species, also supported by phylogenetic analysis, providing reliable means for the identification of these species groups and understanding their interrelationships. Of these CSIs, six CSIs are specifically shared by all hematozoa species, two CSIs serve to distinguish members of the order Piroplasmida, five CSIs are uniquely found in all Piroplasmida species except B. microti and two CSIs are specific for the genus Theileria. Additionally, we also describe 23 CSIs that are exclusively present in all genome-sequenced Plasmodium species and two, nine, ten and eight CSIs which are specific for members of the Plasmodium subgenera Haemamoeba, Laverania, Vinckeia and Plasmodium (excluding P. ovale and P. malariae), respectively. Additionally, our work has identified several CSIs that support species relationships which are not evident from phylogenetic analysis. Of these CSIs, one CSI supports the ancestral nature of the avian-Plasmodium species in comparison to the mammalian-infecting groups of Plasmodium species, four CSIs strongly support a specific relationship of species between the subgenera Plasmodium and Vinckeia and three CSIs each that reliably group P. malariae with members of the subgenus Plasmodium and P. ovale within the subgenus Vinckeia, respectively. These results provide a reliable framework for understanding the evolutionary relationships among the Plasmodium/Piroplasmida species. Further, in view of the exclusivity of the described molecular markers for the indicated groups of hematozoa species, particularly large numbers of unique characteristics that are specific for all Plasmodium species, they provide important molecular tools for biochemical/genetic studies and for developing novel diagnostics and therapeutics for these organisms.

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Comparative size evolution of marine clades from the Late Permian through Middle Triassic

Paleobiology ◽

10.1017/pab.2015.36 ◽

2015 ◽

Vol 42 (1) ◽

pp. 127-142 ◽

Cited By ~ 21

Author(s):

Ellen K. Schaal ◽

Matthew E. Clapham ◽

Brianna L. Rego ◽

Steve C. Wang ◽

Jonathan L. Payne

Keyword(s):

Body Size ◽

Middle Triassic ◽

Size Reduction ◽

Late Triassic ◽

Early Triassic ◽

Large Species ◽

Late Permian ◽

Triassic Boundary ◽

Median Size ◽

Permian Extinction

AbstractThe small size of Early Triassic marine organisms has important implications for the ecological and environmental pressures operating during and after the end-Permian mass extinction. However, this “Lilliput Effect” has only been documented quantitatively in a few invertebrate clades. Moreover, the discovery of Early Triassic gastropod specimens larger than any previously known has called the extent and duration of the Early Triassic size reduction into question. Here, we document and compare Permian-Triassic body size trends globally in eight marine clades (gastropods, bivalves, calcitic and phosphatic brachiopods, ammonoids, ostracods, conodonts, and foraminiferans). Our database contains maximum size measurements for 11,224 specimens and 2,743 species spanning the Late Permian through the Middle to Late Triassic. The Permian/Triassic boundary (PTB) shows more size reduction among species than any other interval. For most higher taxa, maximum and median size among species decreased dramatically from the latest Permian (Changhsingian) to the earliest Triassic (Induan), and then increased during Olenekian (late Early Triassic) and Anisian (early Middle Triassic) time. During the Induan, the only higher taxon much larger than its long-term mean size was the ammonoids; they increased significantly in median size across the PTB, a response perhaps related to their comparatively rapid diversity recovery after the end-Permian extinction. The loss of large species in multiple clades across the PTB resulted from both selective extinction of larger species and evolution of surviving lineages toward smaller sizes. The within-lineage component of size decrease suggests that only part of the size decrease can be related to the end-Permian kill mechanism; in addition, Early Triassic environmental conditions or ecological pressures must have continued to favor small body size as well. After the end-Permian extinction, size decrease occurred across ecologically and physiologically disparate clades, but this size reduction was limited to the first part of the Early Triassic (Induan). Nektonic habitat or physiological buffering capacity may explain the contrast of Early Triassic size increase and diversification in ammonoids versus size reduction and slow recovery in benthic clades.

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A Short-Snouted, Middle Triassic Phytosaur and its Implications for the Morphological Evolution and Biogeography of Phytosauria

Scientific Reports ◽

10.1038/srep46028 ◽

2017 ◽

Vol 7 (1) ◽

Cited By ~ 21

Author(s):

Michelle R. Stocker ◽

Li-Jun Zhao ◽

Sterling J. Nesbitt ◽

Xiao-Chun Wu ◽

Chun Li

Keyword(s):

Middle Triassic ◽

Prey Capture ◽

General Trend ◽

Morphological Evolution ◽

Phylogenetic Analyses ◽

Late Triassic ◽

Early Triassic ◽

Terrestrial Vertebrate ◽

Nearshore Environments ◽

Permian Extinction

Abstract Following the end-Permian extinction, terrestrial vertebrate diversity recovered by the Middle Triassic, and that diversity was now dominated by reptiles. However, those reptilian clades, including archosaurs and their closest relatives, are not commonly found until ~30 million years post-extinction in Late Triassic deposits despite time-calibrated phylogenetic analyses predicting an Early Triassic divergence for those clades. One of these groups from the Late Triassic, Phytosauria, is well known from a near-Pangean distribution, and this easily recognized clade bears an elongated rostrum with posteriorly retracted nares and numerous postcranial synapomorphies that are unique compared with all other contemporary reptiles. Here, we recognize the exquisitely preserved, nearly complete skeleton of Diandongosuchus fuyuanensis from the Middle Triassic of China as the oldest and basalmost phytosaur. The Middle Triassic age and lack of the characteristically-elongated rostrum fill a critical morphological and temporal gap in phytosaur evolution, indicating that the characteristic elongated rostrum of phytosaurs appeared subsequent to cranial and postcranial modifications associated with enhanced prey capture, predating that general trend of morphological evolution observed within Crocodyliformes. Additionally, Diandongosuchus supports that the clade was present across Pangea, suggesting early ecosystem exploration for Archosauriformes through nearshore environments and leading to ease of dispersal across the Tethys.

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Chapter 18 Triassic history

Geological Society London Memoirs ◽

10.1144/gsl.mem.1997.017.01.18 ◽

1997 ◽

Vol 17 (1) ◽

pp. 340-362 ◽

Cited By ~ 2

Author(s):

W. Brian Harland ◽

Isobel Geddes

Keyword(s):

Middle Triassic ◽

Early Jurassic ◽

Late Triassic ◽

Early Triassic ◽

Marked Contrast ◽

Angular Unconformity ◽

Triassic Period ◽

Age Determinations

The Triassic Period of about 40 million years dutation spanned about a third of that of the Carboniferous and Permian interval. The Triassic rocks of Svalbard are easily distinguished from the underlying Permian strata because of a distinct desconformity between them and a marked contrast in facies from the resistant. pale coloured, cherls and siliciclastics of the Kapp Starostin Formation to the softer, darker areno-argillaceous Vardebukta and equivalent formations. Figure 18.1 shows the distribution of Triassic strata in Svalbard.The minor angular unconformity represents a hiatus mainly in the Permian rather than the Triassic record. The dominantly argillaceous facies constitute the Early Triassic to Late Middle Triassic Sassendalen Group. The rocks can be well dated from ammonoids, typically within calcareous concretions in the shales.The succeding Kapp Toscana Group is distinguished by a dominatly sandy deltaic facies in which age determinations are difficult. It spans both Late Triassic and Early Jurassic spoehs (roughly mid-Ladinian to mid-Bathonian). The Triassic-Jurassic boundary is not easy to estimate. Nevertheless towards the end of Triassic time (e.g. Rhaetian) the overall scene changed. Thus of the three formations of the Kapp Toscana Group the lower two (Tschermakfjellet and De Geerdalen) belong to the Triassic story. The overlying Wilhelmøya Formation may possibly range from Latest Triassic through Liassic time, and due to its complexity it is also discussed in the Jurassic-Crataceous chapter (19).The facies of the two groups reflect two distinct environmental configurations. The Sassendalen Group was deposited on a distal marine muddy shelf with a

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New material and revision ofMelanorosaurus thabanensis, a basal sauropodomorph from the Upper Triassic of Lesotho

PeerJ ◽

10.7717/peerj.1639 ◽

2016 ◽

Vol 4 ◽

pp. e1639 ◽

Cited By ~ 9

Author(s):

Claire Peyre de Fabrègues ◽

Ronan Allain

Keyword(s):

Phylogenetic Analysis ◽

Southern Africa ◽

Upper Triassic ◽

Early Jurassic ◽

Type Locality ◽

Late Triassic ◽

Original Publication ◽

Stratigraphic Position ◽

New Material

Melanorosaurusis a genus of basal sauropodomorph that currently includes two species from Southern Africa. In this paper, we redescribe the holotype femur ofMelanorosaurus thabanensisfrom the Elliot Formation of Lesotho, as well as associated remains. The stratigraphic position of this taxon is reviewed, and it is clear that it comes from the Lower Elliot Formation being, therefore, Late Triassic in age, and not Early Jurassic as originally described. The knowledge of the anatomy of the basal sauropodomorph of Thabana Morena is enhanced by the description of six new skeletal elements from the type locality. The femur and the ilium from Thabana Morena are diagnostic and characterized by unusual proportions. The first phylogenetic analysis including both this specimen andMelanorosaurusis conducted. This analysis leads to the conclusion that the femur described in the original publication ofMelanorosaurus thabanensiscan no longer be referred toMelanorosaurus. For these reasons, we hereby createMeroktenosgen. nov. to encompassMeroktenos thabanensiscomb. nov.

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New insights on the early Mesozoic evolution of multiple tectonic regimes in the northeastern North China Craton from the detrital zircon provenance of sedimentary strata

10.5194/se-2018-75 ◽

2018 ◽

Author(s):

Yi Ni Wang ◽

Wen Liang Xu ◽

Feng Wang ◽

Xiao Bo Li

Keyword(s):

Detrital Zircon ◽

North China Craton ◽

North China ◽

Early Jurassic ◽

Orogenic Belt ◽

Late Triassic ◽

Early Triassic ◽

The South ◽

The North ◽

Early Mesozoic

Abstract. To investigate the timing of deposition and provenance of early Mesozoic strata in the northeastern North China Craton (NCC), and to reconstruct the early Mesozoic tectono-paleogeography of the region, we combine LA–ICP–MS detrital zircon U–Pb dating, Hf isotopic data. Early Mesozoic strata include the Early Triassic Heisonggou, Late Triassic Changbai and Xiaoyingzi, and Early Jurassic Yihe formations. Detrital zircons in the Heisonggou Formation comprise ~ 58 % Neoarchean to Paleoproterozoic and ~ 42 % Phanerozoic grains that were sourced from areas to the south and north of the basins within the NCC. This indicates that Early Triassic deposition was controlled primarily by southward subduction of the Paleo-Asian oceanic plate beneath the NCC, and collision between the NCC and the Yangtze Craton (YC). Approximately 88 % of sediments within the Late Triassic Xiaoyingzi Formation were sourced from the NCC to the south, with the remaining ~ 12 % from the Xing'an–Mongol Orogenic Belt (XMOB) to the north. This implies that Late Triassic deposition was related to the final closure of the Paleo-Asian Ocean during the Middle Triassic and the rapid exhumation of the Su–Lu Orogenic Belt between the NCC and YC. In contrast, ~ 88 % of sediments within the Early Jurassic Yihe Formation were sourced from the XMOB to the north, with the remaining ~ 12 % from the NCC to the south. We therefore infer that rapid uplift of the XMOB and the onset of subduction of the Paleo-Pacific Plate beneath Eurasia occurred in the Early Jurassic.

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Systematics of Vriesea (Bromeliaceae): phylogenetic relationships based on nuclear gene and partial plastome sequences

Botanical Journal of the Linnean Society ◽

10.1093/botlinnean/boz102 ◽

2019 ◽

Vol 192 (4) ◽

pp. 656-674 ◽

Cited By ~ 3

Author(s):

Talita Mota Machado ◽

Oriane Loiseau ◽

Margot Paris ◽

Anna Weigand ◽

Leonardo M Versieux ◽

...

Keyword(s):

Phylogenetic Analysis ◽

Bayesian Inference ◽

Maximum Likelihood ◽

Phylogenetic Trees ◽

Nuclear Gene ◽

Evolutionary Relationships ◽

Protein Coding ◽

Protein Coding Genes ◽

A Genome ◽

Genome Skimming

Abstract Vriesea is the second largest genus in Tillandsioideae, the most diverse subfamily of Bromeliaceae. Although recent studies focusing on Tillandsioideae have improved the systematics of Vriesea, no consensus has been reached regarding the circumscription of the genus. Here, we present a phylogenetic analysis of core Tillandsioideae using the nuclear gene phyC and plastid data obtained from genome skimming. We investigate evolutionary relationships at the intergeneric level in Vrieseeae and at the intrageneric level in Vriesea s.s. We sampled a comprehensive dataset, including 11 genera of Tillandsioideae and nearly 50% of all known Vriesea spp. Using a genome skimming approach, we obtained a 78 483-bp plastome alignment containing 35 complete and 55 partial protein-coding genes. Phylogenetic trees were reconstructed using maximum-likelihood based on three datasets: (1) the 78 483 bp plastome alignment; (2) the nuclear gene phyC and (3) a concatenated alignment of 18 subselected plastid genes + phyC. Additionally, a Bayesian inference was performed on the second and third datasets. These analyses revealed that Vriesea s.s. forms a well-supported clade encompassing most of the species of the genus. However, our results also identified several remaining issues in the systematics of Vriesea, including a few species nested in Tillandsia and Stigmatodon. Finally, we recognize some putative groups within Vriesea s.s., which we discuss in the light of their morphological and ecological characteristics.

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