scholarly journals Expression and amplification of the genes for ribosomal RNA in bobbed mutants of Drosophila melanogaster

1985 ◽  
Vol 45 (2) ◽  
pp. 155-165 ◽  
Author(s):  
F. Lee Dutton ◽  
Hallie M. Krider
Keyword(s):  
Drosophila Melanogaster ◽  
Sexual Dimorphism ◽  
Ribosomal Rna ◽  
Dosage Compensation ◽  
Rrna Genes ◽  
Rdna Genes ◽  
Diploid Genome ◽  
Minimum Dose ◽  
Phenotypic Character ◽  
Male Genotype

SummaryWe have employed stocks bearing clonally derived X chromosomes to investigate several features of the bobbed mutant syndrome, and the amplification of rDNA genes in D. melanogaster. We report that posterior macroscutellar bristle length correlates well with the rDNA content (i.e. dose of ivs–, or uninterrupted genes) in cloned X derivative strains. X/O males and X/X females with statistically indistinguishable rDNA contents have virtually identical bristle lengths. This indicates that (with respect to this phenotypic character) the rDNAs in these two genotypes are expressed equally, without apparent sexual dimorphism or dosage compensation. However, the severity of bobbed phenotype in terms of bristle morphology, turgite etching, and delayed eclosion is greater in the Xbb/XNO− female than in the Xbb/O male genotype for the alleles examined. We estimate the minimum dose of functioning rRNA genes required for viability at 26 δC to be 70 genes per diploid genome. We have examined the capacity of several X chromosomes which bear bobbed mutant alleles to compensate in X/O males, and find that disproportionate replication of these rDNAs does not take place. In contrast, at least one of the non-compensating bobbed alleles does appear to undergo rDNA magnification.

Quantitative Genetics of Drosophila Melanogaster. II. Heritabilities and Genetic Correlations between Sexes for Head and Thorax Traits.

Genetics ◽  
1988 ◽  
Vol 119 (2) ◽  
pp. 421-433
Author(s):  
D E Cowley ◽  
W R Atchley
Keyword(s):  
Drosophila Melanogaster ◽  
Sexual Dimorphism ◽  
Genetic Analysis ◽  
X Chromosome ◽  
Dosage Compensation ◽  
Imaginal Disc ◽  
Genetic Correlations ◽  
Body Parts ◽  
Quantitative Genetic ◽  
Males And Females

Abstract A quantitative genetic analysis is reported for traits on the head and thorax of adult fruit flies, Drosophila melanogaster. Females are larger than males, and the magnitude of sexual dimorphism is similar for traits derived from the same imaginal disc, but the level of sexual dimorphism varies widely across discs. The greatest difference between males and females occurs for the dimensions of the sclerotized mouthparts of the proboscis. Most of the traits studied are highly heritable with heritabilities ranging from 0.26 to 0.84 for males and 0.27 to 0.81 for females. In general, heritabilities are slightly higher for males, possibly reflecting the effect of dosage compensation on X-linked variance. The X chromosome contributes substantially to variance for many of these traits, and including results reported elsewhere, the variance for over two-thirds of the traits studied includes X-linked variance. The genetic correlations between sexes for the same trait are generally high and close to unity. Coupled with the small differences in the traits between sexes for heritabilities and phenotypic variances, these results suggest that selection would be very slow to change the level of sexual dimorphism in size of various body parts.

QUANTITATIVE GENETICS OF DROSOPHILA MELANOGASTER. I. SEXUAL DIMORPHISM IN GENETIC PARAMETERS FOR WING TRAITS

Genetics ◽  
1986 ◽  
Vol 114 (2) ◽  
pp. 549-566
Author(s):  
David E Cowley ◽  
William R Atchley ◽  
J J Rutledge
Keyword(s):  
Drosophila Melanogaster ◽  
Sexual Dimorphism ◽  
Dosage Compensation ◽  
Genetic Parameters ◽  
Genetic Model ◽  
Genetic Correlations ◽  
Error Variance ◽  
Minor Effect ◽  
Phenotypic Variance ◽  
Environmental Variance

ABSTRACT Sexual dimorphism in genetic parameters is examined for wing dimensions of Drosophila melanogaster. Data are fit to a quantitative genetic model where phenotypic variance is a linear function of additive genetic autosomal variance (common to both sexes), additive genetic X-linked variances distinct for each sex, variance due to common rearing environment of families, residual environmental variance, random error variance due to replication, and variance due to measurement error and developmental asymmetry (left vs. right sides). Polygenic dosage compensation and its effect on genetic variances and covariances between sexes is discussed. Variance estimates for wing length and other wing dimensions highly correlated with length support the hypothesis that the Drosophila system of dosage compensation will cause male X-linked genetic variance to be substantially larger than female X-linked variance. Results for various wing dimensions differ, suggesting that the level of dosage compensation may differ for different traits. Genetic correlations between sexes for the same trait are presented. Total additive genetic correlations are near unity for most wing traits; this indicates that selection in the same direction in both sexes would have a minor effect on changing the magnitude of difference between sexes. Additive X-linked correlations suggest some genotype × sex interactions for X-linked effects.

REGULATION OF RIBOSOMAL RNA GENE MULTIPLICITY IN DROSOPHILA MELANOGASTER

Genetics ◽  
1973 ◽  
Vol 73 (1) ◽  
pp. 57-71
Author(s):  
Kenneth D Tartof
Keyword(s):  
Drosophila Melanogaster ◽  
Ribosomal Rna ◽  
Homologous Chromosome ◽  
Germ Line ◽  
Rrna Genes ◽  
Rrna Gene ◽  
Wild Type ◽  
Wild Type Level ◽  
New Genotype ◽  
Successive Generations

ABSTRACT The ribosomal RNA (rRNA) genes of Drosophila melanogaster can undergo a disproportionate replication of their number. This occurs when the cluster of rRNA genes (rDNA) of one chromosome is maintained with a homologous chromosome that is completely or partially deficient in its rDNA. Under appropriate genetic conditions, it appears that disproportionate rDNA replication can be generated at the level of both somatic and germ line cells. In the latter case, mutants partially deficient for rDNA can increase their rRNA gene number to the wild type level and transmit this new genotype to successive generations.

scholarly journals Exchange between the ribosomal RNA genes of X and Y chromosomes in Drosophila melanogaster males

1981 ◽  
Vol 38 (1) ◽  
pp. 1-7 ◽  
Author(s):  
R. H. Maddern
Keyword(s):  
Drosophila Melanogaster ◽  
Ribosomal Rna ◽  
Ribosomal Rna Genes ◽  
Rrna Genes ◽  
Y Chromosomes ◽  
A Site ◽  
Rna Genes ◽  
Uniform Polarity

SUMMARYThe genes coding for the 18s and 28s ribosomal RNA (rRNA) are present on both the X and Y chromosomes of D. melanogaster at a site known as the bobbed locus. Exchange was observed in males between a normally orientated X and Y chromosome (Dp(1; 1) scv1 and BSY y31d) with a frequency of 0·079%. One-quarter (7 in 27) of these exchange products between two + chromosomes which both carried sufficient rRNA genes for a bb+ phenotype exhibited a bb phenotype. Evidence is presented that one-half, and possibly all, of the exchanges involved the repetitive bb genes. These results together with those reported by Palumbo, Caizzi & Ritossa (1973) imply that the repeated bb genes of either (or both) the X or Y chromosome are not arranged with uniform polarity and, further, that spermatogonial exchange between the X and Y chromosomes may be restricted to the bb loci.

scholarly journals Repression of interrupted and intact rDNA by the SUMO pathway in Drosophila melanogaster

eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Yicheng Luo ◽  
Elena Fefelova ◽  
Maria Ninova ◽  
Yung-Chia Ariel Chen ◽  
Alexei A Aravin
Keyword(s):  
Drosophila Melanogaster ◽  
Single Cells ◽  
Rrna Genes ◽  
Cell Heterogeneity ◽  
Rdna Genes ◽  
Variable Expression ◽  
Essential Components ◽  
Rdna Expression ◽  
Sumo Pathway ◽  
High Level

Ribosomal RNAs (rRNAs) are essential components of the ribosome and are among the most abundant macromolecules in the cell. To ensure high rRNA level, eukaryotic genomes contain dozens to hundreds of rDNA genes, however, only a fraction of the rRNA genes seems to be active, while others are transcriptionally silent. We found that individual rDNA genes have high level of cell-to-cell heterogeneity in their expression in Drosophila melanogaster. Insertion of heterologous sequences into rDNA leads to repression associated with reduced expression in individual cells and decreased number of cells expressing rDNA with insertions. We found that SUMO (Small Ubiquitin-like Modifier) and SUMO ligase Ubc9 are required for efficient repression of interrupted rDNA units and variable expression of intact rDNA. Disruption of the SUMO pathway abolishes discrimination of interrupted and intact rDNAs and removes cell-to-cell heterogeneity leading to uniformly high expression of individual rDNA in single cells. Our results suggest that the SUMO pathway is responsible for both repression of interrupted units and control of intact rDNA expression.

scholarly journals Repression of interrupted and intact rDNA by the SUMO pathway in Drosophila melanogaster

2020 ◽  
Author(s):  
Yicheng Luo ◽  
Elena Fefelova ◽  
Maria Ninova ◽  
Yung-Chia Ariel Chen ◽  
Alexei A. Aravin
Keyword(s):  
Drosophila Melanogaster ◽  
Single Cells ◽  
Rrna Genes ◽  
Cell Heterogeneity ◽  
Rdna Genes ◽  
Variable Expression ◽  
Essential Components ◽  
Rdna Expression ◽  
Sumo Pathway ◽  
High Level

AbstractRibosomal RNAs (rRNAs) are essential components of the ribosome and are among the most abundant macromolecules in the cell. To ensure high rRNA level, eukaryotic genomes contain dozens to hundreds of rDNA genes, however, only a fraction of the rRNA genes seems to be active, while others are transcriptionally silent. We found that individual rDNA genes have high level of cell-to-cell heterogeneity in their expression in Drosophila melanogaster. Insertion of heterologous sequences into rDNA leads to repression associated with reduced expression in individual cells and decreased number of cells expressing rDNA with insertions. We found that SUMO (Small Ubiquitin-like Modifier) and SUMO ligase Ubc9 are required for efficient repression of interrupted rDNA units and variable expression of intact rDNA. Disruption of the SUMO pathway abolishes discrimination of interrupted and intact rDNAs and removes cell-to-cell heterogeneity leading to uniformly high expression of individual rDNA in single cells. Our results suggest that the SUMO pathway is responsible for both repression of interrupted units and control of intact rDNA expression.

scholarly journals Position effect suppression of ribosomal RNA genes in Drosophila melanogaster: non-autonomous in gynandromorphs?

1976 ◽  
Vol 28 (1) ◽  
pp. 89-91 ◽  
Author(s):  
Jagdeesh Pyati
Keyword(s):  
Drosophila Melanogaster ◽  
Ribosomal Rna ◽  
Position Effect ◽  
Preliminary Evidence ◽  
Genetic Evidence ◽  
Ribosomal Rna Genes ◽  
Rrna Genes ◽  
Rna Genes

SUMMARYBaker (1971) presented genetic evidence that the inviability of In(1)scL8/O and scS1/O males in Drosophila melanogaster is due to position effect suppression of ribosomal RNA cistrons. Although scL8/O and scS1/O males are inviable, scL8/scL8 and scS1/scS1 females are viable. We therefore asked the following question: Is scL8/O or scS1/O viable when part of a gynandromorph? In other words, is position effect suppression of rRNA genes autonomous or non-autonomous in gynandromorphs? In this paper preliminary evidence is presented which suggests that position effect suppression of rRNA cistrons is non-autonomous. The evidence is that scLS/ or scS1/O (male) parts of gynandromorphs are not only viable but normal in appearance.

Phylogeny of hymenolepidids (Cestoda: Cyclophyllidea) from mammals: sequences of 18S rRNA and COI genes confirm major clades revealed by the 28S rRNA analyses

2021 ◽  
Vol 95 ◽  
Author(s):  
B. Neov ◽  
G.P. Vasileva ◽  
G. Radoslavov ◽  
P. Hristov ◽  
D.T.J. Littlewood ◽  
...  
Keyword(s):  
Ribosomal Rna ◽  
18S Rrna ◽  
Phylogenetic Analyses ◽  
The Other ◽  
Rrna Genes ◽  
Host Switching ◽  
28S Rrna ◽  
Mitochondrial Cytochrome ◽  
Rapid Radiation ◽  
18S Rrna Genes

Abstract The aim of the study is to test a hypothesis for the phylogenetic relationships among mammalian hymenolepidid tapeworms, based on partial (D1–D3) nuclear 28S ribosomal RNA (rRNA) genes, by estimating new molecular phylogenies for the group based on partial mitochondrial cytochrome c oxidase I (COI) and nuclear 18S rRNA genes, as well as a combined analysis using all three genes. New sequences of COI and 18S rRNA genes were obtained for Coronacanthus integrus, C. magnihamatus, C. omissus, C. vassilevi, Ditestolepis diaphana, Lineolepis scutigera, Spasskylepis ovaluteri, Staphylocystis tiara, S. furcata, S. uncinata, Vaucherilepis trichophorus and Neoskrjabinolepis sp. The phylogenetic analyses confirmed the major clades identified by Haukisalmi et al. (Zoologica Scripta 39: 631–641, 2010): Ditestolepis clade, Hymenolepis clade, Rodentolepis clade and Arostrilepis clade. While the Ditestolepis clade is associated with soricids, the structure of the other three clades suggests multiple evolutionary events of host switching between shrews and rodents. Two of the present analyses (18S rRNA and COI genes) show that the basal relationships of the four mammalian clades are branching at the same polytomy with several hymenolepidids from birds (both terrestrial and aquatic). This may indicate a rapid radiation of the group, with multiple events of colonizations of mammalian hosts by avian parasites.

scholarly journals Non-Coding, RNAPII-Dependent Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State in S. cerevisiae

2021 ◽  
Vol 7 (3) ◽  
pp. 41
Author(s):  
Emma Lesage ◽  
Jorge Perez-Fernandez ◽  
Sophie Queille ◽  
Christophe Dez ◽  
Olivier Gadal ◽  
...  
Keyword(s):  
Rna Polymerase ◽  
Rna Polymerase Ii ◽  
Tandem Repeats ◽  
Chromatin State ◽  
Rrna Genes ◽  
Rdna Genes ◽  
Regulatory Pathways ◽  
Chromatin States ◽  
Non Coding Rnas ◽  
Pervasive Transcription

Pervasive transcription is widespread in eukaryotes, generating large families of non-coding RNAs. Such pervasive transcription is a key player in the regulatory pathways controlling chromatin state and gene expression. Here, we describe long non-coding RNAs generated from the ribosomal RNA gene promoter called UPStream-initiating transcripts (UPS). In yeast, rDNA genes are organized in tandem repeats in at least two different chromatin states, either transcribed and largely depleted of nucleosomes (open) or assembled in regular arrays of nucleosomes (closed). The production of UPS transcripts by RNA Polymerase II from endogenous rDNA genes was initially documented in mutants defective for rRNA production by RNA polymerase I. We show here that UPS are produced in wild-type cells from closed rDNA genes but are hidden within the enormous production of rRNA. UPS levels are increased when rDNA chromatin states are modified at high temperatures or entering/leaving quiescence. We discuss their role in the regulation of rDNA chromatin states and rRNA production.

scholarly journals Characterization, Comparative Analysis and Phylogenetic Implications of Mitogenomes of Fulgoridae (Hemiptera: Fulgoromorpha)

Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1185
Author(s):  
Wenqian Wang ◽  
Huan Zhang ◽  
Jérôme Constant ◽  
Charles R. Bartlett ◽  
Daozheng Qin
Keyword(s):  
Control Region ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Start Codon ◽  
Rrna Genes ◽  
Rich Region ◽  
Protein Coding ◽  
Phylogenetic Implications ◽  
Rna Genes ◽  
Unpaired Base

The complete mitogenomes of nine fulgorid species were sequenced and annotated to explore their mitogenome diversity and the phylogenetics of Fulgoridae. All species are from China and belong to five genera: Dichoptera Spinola, 1839 (Dichoptera sp.); Neoalcathous Wang and Huang, 1989 (Neoalcathous huangshanana Wang and Huang, 1989); Limois Stål, 1863 (Limois sp.); Penthicodes Blanchard, 1840 (Penthicodes atomaria (Weber, 1801), Penthicodes caja (Walker, 1851), Penthicodes variegata (Guérin-Méneville, 1829)); Pyrops Spinola, 1839 (Pyrops clavatus (Westwood, 1839), Pyrops lathburii (Kirby, 1818), Pyrops spinolae (Westwood, 1842)). The nine mitogenomes were 15,803 to 16,510 bp in length with 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs) and a control region (A + T-rich region). Combined with previously reported fulgorid mitogenomes, all PCGs initiate with either the standard start codon of ATN or the nonstandard GTG. The TAA codon was used for termination more often than the TAG codon and the incomplete T codon. The nad1 and nad4 genes varied in length within the same genus. A high percentage of F residues were found in the nad4 and nad5 genes of all fulgorid mitogenomes. The DHU stem of trnV was absent in the mitogenomes of all fulgorids sequenced except Dichoptera sp. Moreover, in most fulgorid mitogenomes, the trnL2, trnR, and trnT genes had an unpaired base in the aminoacyl stem and trnS1 had an unpaired base in the anticodon stem. The similar tandem repeat regions of the control region were found in the same genus. Phylogenetic analyses were conducted based on 13 PCGs and two rRNA genes from 53 species of Fulgoroidea and seven outgroups. The Bayesian inference and maximum likelihood trees had a similar topological structure. The major results show that Fulgoroidea was divided into two groups: Delphacidae and ((Achilidae + (Lophopidae + (Issidae + (Flatidae + Ricaniidae)))) + Fulgoridae). Furthermore, the monophyly of Fulgoridae was robustly supported, and Aphaeninae was divided into Aphaenini and Pyropsini, which includes Neoalcathous, Pyrops, Datua Schmidt, 1911, and Saiva Distant, 1906. The genus Limois is recovered in the Aphaeninae, and the Limoisini needs further confirmation; Dichoptera sp. was the earliest branch in the Fulgoridae.

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