scholarly journals Voter Model and Biased Voter Model in Heterogeneous Environments

2007 ◽  
Vol 44 (03) ◽  
pp. 770-787
Author(s):  
N. Lanchier ◽  
C. Neuhauser
Keyword(s):  
Gene Flow ◽  
Pollen Dispersal ◽  
Transgenic Crops ◽  
Wild Relatives ◽  
Voter Model ◽  
Wild Plants ◽  
Transgenic Crop ◽  
Heterogeneous Environments ◽  
Wild Type ◽  
Type Gene

With the rapid adoption of transgenic crops, gene flow from transgenic crops to wild relatives through pollen dispersal is of significant concern and warrants both empirical and theoretical studies to assess the risk of introduction of transgenes into wild populations. We propose to use the (biased) voter model in a heterogeneous environment to investigate the effects of recurrent gene flow from transgenic crop to wild relatives. The model is defined on the d-dimensional integer lattice that is divided into two parts, Δ and Z d \ Δ. Individuals carrying the transgene and individuals carrying the wild type gene compete according to the evolution rules of a (biased) voter model on Z d \ Δ, while the process is conditioned to have only individuals carrying the transgene on Δ. Our main findings suggest that unless transgenes confer increased fitness in wild relatives, introgression of transgenes into populations of wild plants is slow and may even be reversible without intervention. Our study also addresses the effects of different spatial planting patterns of transgenic crops on the rate of introgression.

scholarly journals Voter Model and Biased Voter Model in Heterogeneous Environments

2007 ◽  
Vol 44 (3) ◽  
pp. 770-787 ◽  
Author(s):  
N. Lanchier ◽  
C. Neuhauser
Keyword(s):  
Gene Flow ◽  
Pollen Dispersal ◽  
Transgenic Crops ◽  
Wild Relatives ◽  
Voter Model ◽  
Wild Plants ◽  
Transgenic Crop ◽  
Heterogeneous Environments ◽  
Wild Type ◽  
Type Gene

With the rapid adoption of transgenic crops, gene flow from transgenic crops to wild relatives through pollen dispersal is of significant concern and warrants both empirical and theoretical studies to assess the risk of introduction of transgenes into wild populations. We propose to use the (biased) voter model in a heterogeneous environment to investigate the effects of recurrent gene flow from transgenic crop to wild relatives. The model is defined on the d-dimensional integer lattice that is divided into two parts, Δ and Zd \ Δ. Individuals carrying the transgene and individuals carrying the wild type gene compete according to the evolution rules of a (biased) voter model on Zd \ Δ, while the process is conditioned to have only individuals carrying the transgene on Δ. Our main findings suggest that unless transgenes confer increased fitness in wild relatives, introgression of transgenes into populations of wild plants is slow and may even be reversible without intervention. Our study also addresses the effects of different spatial planting patterns of transgenic crops on the rate of introgression.

scholarly journals Current knowledge of gene flow in plants: implications for transgene flow

2003 ◽  
Vol 358 (1434) ◽  
pp. 1163-1170 ◽  
Author(s):  
Norman C. Ellstrand
Keyword(s):  
Gene Flow ◽  
Rare Species ◽  
Current Knowledge ◽  
Extinction Risk ◽  
Transgenic Crops ◽  
Wild Relatives ◽  
Wild Populations ◽  
Transgene Flow ◽  
Negative Impacts

Plant evolutionary biologists' view of gene flow and hybridization has undergone a revolution. Twenty–five years ago, both were considered rare and largely inconsequential. Now gene flow and hybridization are known to be idiosyncratic, varying with the specific populations involved. Gene flow typically occurs at evolutionarily significant rates and at significant distances. Spontaneous hybridization occasionally has important applied consequences, such as stimulating the evolution of more aggressive invasives and increasing the extinction risk for rare species. The same problems have occurred for spontaneous hybridization between crops and their wild relatives. These new data have implications for transgenic crops: (i) for most crops, gene flow can act to introduce engineered genes into wild populations; (ii) depending on the specific engineered gene(s) and populations involved, gene flow may have the same negative impacts as those observed for traditionally improved crops; (iii) gene flow's idiosyncratic nature may frustrate management and monitoring attempts; and (iv) intercrop transgene flow, although rarely discussed, is equally worthy of study.

scholarly journals Asian wild apples threatened by gene flow from domesticated apples and by their pestified pathogen

2020 ◽  
Author(s):  
Alice Feurtey ◽  
Ellen Guitton ◽  
Marie De Gracia Coquerel ◽  
Ludovic Duvaux ◽  
Jason Shiller ◽  
...  
Keyword(s):  
Gene Flow ◽  
Fungal Pathogen ◽  
Venturia Inaequalis ◽  
Wild Plants ◽  
Avirulence Gene ◽  
Secondary Contact ◽  
Genetic Integrity ◽  
Wild Type ◽  
Apple Trees ◽  
Pathogenicity Tests

AbstractMassive gene flow between crops and their wild relatives may threaten the genetic integrity of wild species. Such threats are now well documented, but little is known about indirect consequences involving the spillover of crop pathogens to wild plants or introgression between crop and wild pathogens. To address these questions, we used population genetics approaches, demographic inference and pathogenicity tests on host-pathogen pairs composed of wild or domesticated apple trees of Central Asia and their fungal pathogen, Venturia inaequalis, itself showing differentiated agricultural-type and wild-type populations. We confirmed the occurrence of gene flow from cultivated to wild apple trees in Asian forests, threatening the Asian wild apple genetic integrity. SNP markers and demographic modeling revealed the occurrence of a secondary contact followed by hybridization between agricultural-type and wild-type fungal pathogen populations, and the dispersal of the agricultural-type pathogen in wild forests. We detected a SNP predicting the ability of the fungus to parasitize the different host populations, which induced an early stop codon in a gene coding for a small secreted protein in the agricultural-type fungal population, thus representing a putative avirulence gene which function loss would enable to parasitize cultivated apples. Pathogenicity tests in fact revealed the pestification of V. inaequalis, with higher virulence of the agricultural-type population on both wild and domesticated trees. Our findings highlight the threat posed by cultivating a crop near its center of origin, with the invasion of a pestified pathogen on wild plants and introgression in the wild-type pathogen.

Metabolic signalling and the partitioning of resources in plant storage organs

1999 ◽  
Vol 133 (3) ◽  
pp. 243-249 ◽  
Author(s):  
NIGEL G. HALFORD
Keyword(s):  
Dry Weight ◽  
Wild Relatives ◽  
Crop Plants ◽  
Wild Plants ◽  
Young Plant ◽  
Carbon And Nitrogen ◽  
Cultivated Potato ◽  
Metabolic Signalling ◽  
Storage Organs ◽  
Plant Storage

The most important harvested organs of crop plants, such as seeds, tubers and fruits, are often described as assimilate sinks. They play little or no part in the fixation of carbon through the production of sugars through photosynthesis, or in the uptake of nitrogen and sulphur, but import these assimilated resources to support metabolism and to store them in the form of starch, oils and proteins. Wild plants store resources in seeds and tubers to later support an emergent young plant. Cultivated crops are effectively storing resources to provide us with food and many have been bred to accumulate much more than would be required otherwise. For example, approximately 80% of a cultivated potato plant's dry weight is contained in its tubers, ten times the proportion in the tubers of its wild relatives (Inoue & Tanaka 1978). Cultivation and breeding has brought about a shift in the partitioning of carbon and nitrogen assimilate between the organs of the plant.

The DNA Binding Protein Rfg1 Is a Repressor of Filamentation inCandida albicans

Genetics ◽  
2001 ◽  
Vol 157 (4) ◽  
pp. 1503-1512 ◽  
Author(s):  
Roy A Khalaf ◽  
Richard S Zitomer
Keyword(s):  
Dna Binding ◽  
Binding Protein ◽  
Hyphal Growth ◽  
Dna Binding Protein ◽  
Homozygous Deletion ◽  
Wild Type ◽  
Pathogenic Yeast ◽  
Repression Complex ◽  
Type Gene ◽  
Repression Domain

AbstractWe have identified a repressor of hyphal growth in the pathogenic yeast Candida albicans. The gene was originally cloned in an attempt to characterize the homologue of the Saccharomyces cerevisiae Rox1, a repressor of hypoxic genes. Rox1 is an HMG-domain, DNA binding protein with a repression domain that recruits the Tup1/Ssn6 general repression complex to achieve repression. The C. albicans clone also encoded an HMG protein that was capable of repression of a hypoxic gene in a S. cerevisiae rox1 deletion strain. Gel retardation experiments using the purified HMG domain of this protein demonstrated that it was capable of binding specifically to a S. cerevisiae hypoxic operator DNA sequence. These data seemed to indicate that this gene encoded a hypoxic repressor. However, surprisingly, when a homozygous deletion was generated in C. albicans, the cells became constitutive for hyphal growth. This phenotype was rescued by the reintroduction of the wild-type gene on a plasmid, proving that the hyphal growth phenotype was due to the deletion and not a secondary mutation. Furthermore, oxygen repression of the hypoxic HEM13 gene was not affected by the deletion nor was this putative ROX1 gene regulated positively by oxygen as is the case for the S. cerevisiae gene. All these data indicate that this gene, now designated RFG1 for Repressor of Filamentous Growth, is a repressor of genes required for hyphal growth and not a hypoxic repressor.

scholarly journals Occurrence of Repeat Induced Point Mutation in Long Segmental Duplications of Neurospora

Genetics ◽  
1997 ◽  
Vol 147 (1) ◽  
pp. 125-136 ◽  
Author(s):  
David D Perkins ◽  
Brian S Margolin ◽  
Eric U Selker ◽  
S D Haedo
Keyword(s):  
Point Mutation ◽  
Sexual Cycle ◽  
Segmental Duplications ◽  
Wild Type ◽  
Single Chain ◽  
Base Pairs ◽  
Gene Size ◽  
Type Gene ◽  
Repeat Induced Point Mutation

Abstract Previous studies of repeat induced point mutation (RIP) have typically involved gene-size duplications resulting from insertion of transforming DNA at ectopic chromosomal positions. To ascertain whether genes in larger duplications are subject to RIP, progeny were examined from crosses heterozygous for long segmental duplications obtained using insertional or quasiterminal translocations. Of 17 distinct mutations from crossing 11 different duplications, 13 mapped within the segment that was duplicated in the parent, one was closely linked, and three were unlinked. Half of the mutations in duplicated segments were at previously unknown loci. The mutations were recessive and were expressed both in haploid and in duplication progeny from Duplication × Normal, suggesting that both copies of the wild-type gene had undergone RIP. Seven transition mutations characteristic of RIP were found in 395 base pairs (bp) examined in one ro-11 allele from these crosses and three were found in ~750 bp of another. A single chain-terminating C to T mutation was found in 800 bp of arg-6. RIP is thus responsible. These results are consistent with the idea that the impaired fertility that is characteristic of segmental duplications is due to inactivation by RIP of genes needed for progression through the sexual cycle.

scholarly journals Identification and Characterization of a Peptidoglycan Hydrolase, MurA, of Listeria monocytogenes, a Muramidase Needed for Cell Separation

2003 ◽  
Vol 185 (23) ◽  
pp. 6801-6808 ◽  
Author(s):  
Shannon A. Carroll ◽  
Torsten Hain ◽  
Ulrike Technow ◽  
Ayub Darji ◽  
Philippos Pashalidis ◽  
...  
Keyword(s):  
Cell Wall ◽  
Listeria Monocytogenes ◽  
Cell Separation ◽  
Bacterial Species ◽  
Surface Protein ◽  
Wild Type ◽  
Terminal Domain ◽  
Cell Wall Hydrolase ◽  
Characteristic Features ◽  
Type Gene

ABSTRACT A novel cell wall hydrolase encoded by the murA gene of Listeria monocytogenes is reported here. Mature MurA is a 66-kDa cell surface protein that is recognized by the well-characterized L. monocytogenes-specific monoclonal antibody EM-7G1. MurA displays two characteristic features: (i) an N-terminal domain with homology to muramidases from several gram-positive bacterial species and (ii) four copies of a cell wall-anchoring LysM repeat motif present within its C-terminal domain. Purified recombinant MurA produced in Escherichia coli was confirmed to be an authentic cell wall hydrolase with lytic properties toward cell wall preparations of Micrococcus lysodeikticus. An isogenic mutant with a deletion of murA that lacked the 66-kDa cell wall hydrolase grew as long chains during exponential growth. Complementation of the mutant strain by chromosomal reintegration of the wild-type gene restored expression of this murein hydrolase activity and cell separation levels to those of the wild-type strain. Studies reported herein suggest that the MurA protein is involved in generalized autolysis of L. monocytogenes.

Sign in / Sign up

Export Citation Format

Share Document