Paedomorphosis, Aristotle's lantern, and the origin of the sand dollars (Echinodermata: Clypeasteroida)

Paleobiology ◽  
1990 ◽  
Vol 16 (1) ◽  
pp. 25-48 ◽  
Author(s):  
Rich Mooi

Convincing hypotheses of the origin of major invertebrate groups are difficult to make in the absence of phylogenetic analyses. In spite of this, several scenarios exist for the origin of the unusual echinoid order Clypeasteroida. I expand upon the most probable of these models by performing a phylogenetic analysis on three clypeasteroid suborders, the enigmatic fossil genusTogocyamus, and the extinct Oligopygoida. This analysis shows that the oligopygoids are the sister group of the Clypeasteroida plusTogocyamus. The latter is here considered a plesion (extinct sister group) to the crown group Clypeasteroida. Within that order, the suborder Clypeasterina is the sister group to the Laganina plus Scutellina. A new classification of all these taxa is presented. The phylogeny is based on 47 characters and incorporates data on external appendages, Aristotle's lantern anatomy, and test structure of irregular echinoids, as well as new information on the morphology ofTogocyamus. The earliest clypeasteroids had a lantern similar to that of adult oligopygoids, which in turn inherited their lantern from a cassiduloid-like ancestor that retained the lantern into adulthood. This lantern is absent in adult cassiduloids. Subsequent changes, including modification of the lantern into a crushing mill, extreme flattening of the test, and proliferation of food-gathering tube feet have allowed clypeasteroids to become epifaunal inhabitants of environments characterized by fine, shifting substrates, a habitat previously inaccessible to most other irregular echinoids.

2003 ◽  
Vol 40 (8) ◽  
pp. 1071-1083 ◽  
Author(s):  
Jason S Anderson ◽  
Robert L Carroll ◽  
Timothy B Rowe

High-resolution computed tomography provides an alternative to serial sectioning and other destructive techniques of studying fossils (data available at http://www.DigiMorph.org). This technology was used to study the oldest aistopod Lethiscus stocki. The fossil is found to have approximately 30 closely spaced teeth on its maxilla and dentary, a short vomer, a palatine running nearly the entire length of the maxilla that is toothed at least posteriorly, and a choana that is located at the premaxilla–maxilla suture. It has a lower jaw with a high articlular facet for the quadrate condyle; a lateral fossa for the adductor musculature, superficially similar to the mammalian masseteric fossa; and a sutural pattern that closely resembles that of Oestocephalus. Previously reported pectoral elements are not evident in the scans and may be best interpreted as fractures on the surface of the nodule associated with sedimentary inclusions. Relationships among all relatively complete aistopods were analyzed using parsimony. Two most parsimonious trees were found, differing in the arrangement of the outgroup taxa. Phlegethontia and Pseudophlegethontia are found to be sister taxa to Coloraderpeton and Oestocephalus, with Ophiderpeton and Lethiscus placed as successively more distant taxa. This topology renders Ophiderpetontidae, as previously conceived, paraphyletic. Lethiscus is confirmed to be the most basal aistopod. A new classification of Aistopoda is presented. This study shows that the palatoquadrate of higher aistopods is derived in-group, which is consistent with the trends in aistopods of peramorphosis in the endochondral skeleton and paedomorphosis in the dermal skeleton.


2021 ◽  
Author(s):  
Iwona Kania-Kłosok ◽  
André Nel ◽  
Jacek Szwedo ◽  
Wiktoria Jordan-Stasiło ◽  
Wiesław Krzemiński

Abstract Ghost lineages have always challenged the understanding of organism evolution. They participate in misinterpretations in phylogenetic, clade dating, biogeographic, and paleoecologic studies. They directly result from fossilization biases and organism biology. The Cylindrotomidae are a perfect example of an unexplained ghost lineage during the Mesozoic, as its sister family Tipulidae is already well diversified during the Cretaceous, while the oldest Cylindrotomidae are Paleogene representatives of the extant genus Cylindrotoma and of the enigmatic fossil genus Cyttaromyia. Here We clarify the phylogenetic position of Cyttaromyia in the stem group of the whole family, suggesting that the crown group of the Cylindrotomidae began to diversify during the Cenozoic, unlike their sister group Tipulidae. We make a comparative analysis of all species in Cyttaromyia, together with the descriptions of the two new species, C. gelhausi sp. nov. and C. freiwaldi sp. nov., and the revision of C. obdurescens. The cylindrotomid biogeography seems to be incongruent with the phylogenetic analysis, the apparently most derived subfamily Stibadocerinae having apparently a ‘Gondwanan’ distribution, with some genera only known from Australia or Chile, while the most inclusive Cylindrotominae are Holarctic.


1996 ◽  
Vol 351 (1344) ◽  
pp. 1171-1193 ◽  

A new classification of the Brachiopoda is proposed to take into account recent advances in our understanding of the anatomy, shell morphology, ontogeny and phylogeny of the phylum. The use of phylogenetic analysis to help rationalize this new information did not obviate the dilemma facing all previous classifications of how best to reconcile fossil and living data. Over 95% of all recognized genera are founded on extinct species, with the greatest diversity occurring in Cambro-Ordovician times when all but two of the 26 major groups constituting the phylum first appeared. Only five of these groups survive to the present day, albeit as well dispersed representatives of the early diversity. To com pare phylogenies extrapolated from these data, phylogenetic analyses of Recent and Cambro-Ordovician groups were conducted independently by using 55 biological characters for the former group and 69 morphological (and inferred anatomical) features for the latter; only 12 characters were common to both exercises. The cladogram derived for seven Recent suprafamilial taxa, with Phoronis and cyclostome and ctenostome bryozoans as outgroups, is virtually the same as that being obtained by studies of the brachiopod genome. It is also largely compatible with the cladogram for 33 Cambro-Ordovician suprafamilial taxa with Phoronis as outgroup. This cladogram has, in turn, been subjected to stratocladistic tests and has been shown to be consistent with the stratigraphic records of the taxa analysed. A reconciliation of the genealogies derived from the Recent and Cambro-Ordovician data, represented by 14 taxa and clades (with Phoronis as outgroup), was effected by using the 19 synapomorphies characterizing these groups. The resultant cladogram shows living organophosphatic-shelled lingulids (and discinids) as a sister group to a clade of all other living brachiopods. This clade, however, includes the extinct organophosphatic-shelled paterinids and the organocalcitic-shelled craniids. The inclusion of the craniids, in particular, is a cladistic compromise that is inconsistent with genetic and some anatomical and morphological evidence. It was therefore decided to accommodate these inconsistencies by dividing the Brachiopoda into three subphyla, each typified by Recent species with early Palaeozoic ancestors and defined by easily identifiable synapomorphies. The inarticulated Linguliformea, consisting of two classes (Lingulata and Paterinata), is characterized by an organophosphatic shell with a stratiform secondary layer and by planktotrophic larvae. Its modern representatives are the lingulids and discinids. The inarticulated Craniiformea is primarily distinguished by an organocarbonate shell with a laminar secondary layer and the absence of a pedicle throughout ontogeny. The craniids are the sole Recent descendants. The mainly articulated Rhynchonelliformea is the largest subphylum as it embraces five Classes (Chileata, Obolellata, Kutorginata, Strophomenata and Rhynchonellata). Its synapomorphies include an organocarbonate shell with a fibrous secondary layer, the presence of a pedicle without a coelomic core and the development of a recognizable diductor muscle system controlling the opening of the valves about a hinge axis defined by interareas. All Recent brachiopod species articulating with cyrtomatodont teeth and sockets are rhynchonelliforms.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Iwona Kania-Kłosok ◽  
André Nel ◽  
Jacek Szwedo ◽  
Wiktoria Jordan-Stasiło ◽  
Wiesław Krzemiński

AbstractGhost lineages have always challenged the understanding of organism evolution. They participate in misinterpretations in phylogenetic, clade dating, biogeographic, and paleoecologic studies. They directly result from fossilization biases and organism biology. The Cylindrotomidae are a perfect example of an unexplained ghost lineage during the Mesozoic, as its sister family Tipulidae is already well diversified during the Cretaceous, while the oldest Cylindrotomidae are Paleogene representatives of the extant genus Cylindrotoma and of the enigmatic fossil genus Cyttaromyia. Here we clarify the phylogenetic position of Cyttaromyia in the stem group of the whole family, suggesting that the crown group of the Cylindrotomidae began to diversify during the Cenozoic, unlike their sister group Tipulidae. We make a comparative analysis of all species in Cyttaromyia, together with the descriptions of the two new species, C. gelhausi sp. nov. and C. freiwaldi sp. nov., and the revision of C. obdurescens. The cylindrotomid biogeography seems to be incongruent with the phylogenetic analysis, the apparently most derived subfamily Stibadocerinae having apparently a ‘Gondwanan’ distribution, with some genera only known from Australia or Chile, while the most inclusive Cylindrotominae are Holarctic.


Author(s):  
Benoit Morel ◽  
Pierre Barbera ◽  
Lucas Czech ◽  
Ben Bettisworth ◽  
Lukas Hübner ◽  
...  

Abstract Numerous studies covering some aspects of SARS-CoV-2 data analyses are being published on a daily basis, including a regularly updated phylogeny on nextstrain.org. Here, we review the difficulties of inferring reliable phylogenies by example of a data snapshot comprising a quality-filtered subset of 8, 736 out of all 16, 453 virus sequences available on May 5, 2020 from gisaid.org. We find that it is difficult to infer a reliable phylogeny on these data due to the large number of sequences in conjunction with the low number of mutations. We further find that rooting the inferred phylogeny with some degree of confidence either via the bat and pangolin outgroups or by applying novel computational methods on the ingroup phylogeny does not appear to be credible. Finally, an automatic classification of the current sequences into sub-classes using the mPTP tool for molecular species delimitation is also, as might be expected, not possible, as the sequences are too closely related. We conclude that, although the application of phylogenetic methods to disentangle the evolution and spread of COVID-19 provides some insight, results of phylogenetic analyses, in particular those conducted under the default settings of current phylogenetic inference tools, as well as downstream analyses on the inferred phylogenies, should be considered and interpreted with extreme caution.


Phytotaxa ◽  
2014 ◽  
Vol 159 (4) ◽  
pp. 241 ◽  
Author(s):  
Yu-lan Peng ◽  
Yu Zhang ◽  
Xin-fen Gao ◽  
Lin-jing Tong ◽  
Liang Li ◽  
...  

The systematic position of Paraixeris humifusa (Asteraceae) is hard to define, because the circumscription of Paraixeris, Youngia and Crepidiastrum, three closely related genera in subtribe Crepidinae (Cichorieae), is not clear. This paper reports on the relationships between 30 species in subtribe Crepidinae, based on an analysis of nucleotides from one nuclear (ITS) and three chloroplast DNA regions ( trnL-F, rps16 and atpB-rbcL). The phylogenetic analyses used maximum parsimony with maximum likelihood inference. The monophyly of Crepidiastrum in the most recent generic classification of Shih & Kilian (2011) is explored. The results show that 12 species in Crepidiastrum constitute a monophyletic group, and that Paraixeris humifusa should be treated as Youngia humifusa.


PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3844 ◽  
Author(s):  
Cara Van Der Wal ◽  
Shane T. Ahyong ◽  
Simon Y.W. Ho ◽  
Nathan Lo

The crustacean order Stomatopoda comprises seven superfamilies of mantis shrimps, found in coastal waters of the tropics and subtropics. These marine carnivores bear notable raptorial appendages for smashing or spearing prey. We investigated the evolutionary relationships among stomatopods using phylogenetic analyses of three mitochondrial and two nuclear markers. Our analyses recovered the superfamily Gonodactyloidea as polyphyletic, withHemisquillaas the sister group to all other extant stomatopods. A relaxed molecular clock, calibrated by seven fossil-based age constraints, was used to date the origin and major diversification events of stomatopods. Our estimates suggest that crown-group stomatopods (Unipeltata) diverged from their closest crustacean relatives about 340 Ma (95% CRI [401–313 Ma]). We found that the specialized smashing appendage arose after the spearing appendage ∼126 Ma (95% CRI [174–87 Ma]). Ancestral state reconstructions revealed that the most recent common ancestor of extant stomatopods had eyes with six midband rows of hexagonal ommatidia. Hexagonal ommatidia are interpreted as plesiomorphic in stomatopods, and this is consistent with the malacostracan ground-plan. Our study provides insight into the evolutionary timescale and systematics of Stomatopoda, although further work is required to resolve with confidence the phylogenetic relationships among its superfamilies.


2004 ◽  
Vol 13 (1) ◽  
pp. 83-113
Author(s):  
Yu.A. Pesenko

The monophyly of the cosmopolitan tribe Halictini, including over 2300 currently recognized species, is supported by at least a single manifested synapomorphy shared by all members of the tribe: metasomal tergum VII of the male is modified; this forms a transverse ridge giving a false apex beneath which the tergum is strongly reflexed to the morphological posterior margin. On the basis of the present phylogenetic analysis, the tribe Halictini is subdivided into five subtribes: Halictina (comprised of 7 genera: Echthralictus, Glossodialictus, Halictus, Homalictus, Patellapis, Seladonia, and Thrincohalictus), Sphecodina (4 genera: Eupetersia, Microsphecodes, Ptilocleptis, and Sphecodes), Thrinchostomina (2 genera: Thrinchostoma and Parathrincostoma), Caenohalictina (9 genera: Agapostemon, Caenohalictus, Dinagapostemon, Habralictus, Mexalictus, Paragapostemon, Pseudagapostemon, Rhinetula, and Ruizantheda), and Gastrohalictina (one large and diverse genus: Lasioglossum s. l.). The subtribe Halictina is a paraphyletic group; the remaining four tribes are strictly monophyletic (holophyletic). The monophyly of the Halictus genus-group, comprising the genera Halictus and Seladonia, is supported by two distinct synapomorphies of the male genitalia: (1) dorsal gonostylus simple (not double), flattened, broad, narrowed proximally, and provided with a clump of very coarse bristles on the inner surface; (2) ventral gonostylus sclerotized, relatively thin and long, directed backward. Only generalized members of the group possess both the character states above. In derived members, the clump of bristles and the ventral gonostylus are often lost independently. The sister group of the Halictus genus-group is the genus Thrincohalictus. This is supported by the following synapomorphy found among the tribe Halictini only in Halictus, Seladonia, and Thrincohalictus: the ventral gonobasal rim in the male genitalia is forming a right posterolateral angle with a short projection directed laterally. Another feature characterizing these three genera is the presence (except in the parasitic subgenus Paraseladonia) of posterior bands of tomentum or dense and much plumose appressed hairs on the metasomal terga. However, this character is shared also with Patellapis subgenera Patellapis and Lomatalictus. The following subgeneric classification of the genera Halictus and Seladonia is suggested. The genus Halictus includes 12 subgenera: Acalcaripes (2 species), Argalictus (8), Halictus s. str. (4), Hexataenites (11), Lampralictus (1), Monilapis (29), Nealictus (2), Odontalictus (2), Platyhalictus (14), Protohalictus (13), Ramalictus (2), and Tytthalictus (4). The genus Seladonia comprises 6 subgenera, including 2 new ones: Mucoreohalictus subg. n. (15), Pachyceble (22), Paraseladonia (1), Placidohalictus subg. n. (5), Seladonia s. str. (36), and Vestitohalictus (16). The subgenera of Halictus and Seladonia are keyed. The phylogenetic tree of the subgenera of Halictus and Seladonia is reconstructed with use of 46 morphological characters of adults. All other genera of the tribe Halictini were taken as outgroup. The genus Halictus is ascertained as a strictly monophyletic group based upon a single postulated synapomorphy: dorsal gonostylus with a triangular hair patch as a distal appendage on inner side. All the subgenera of this genus appear as strictly monophyletic groups, with the exception of Monilapis, which is a paraphyletic one in relation to Acalcaripes. The monophyly of the genus Seladonia is supported by three synapomorphies, including a novelty (unique synapomorphy): male dorsal gonostylus with a deep cleft. All the subgenera of this genus are strictly monophyletic with the exception of Placidohalictus, which is a paraphyletic one in relation to Vestitohalictus and Mucoreohalictus. A synonymical catalogue of species and species-group names in the genera Halictus and Seladonia, including 442 names, is provided as an appendix.


2004 ◽  
Vol 54 (5) ◽  
pp. 1861-1875 ◽  
Author(s):  
David Moreira ◽  
Purificación López-García ◽  
Keith Vickerman

Given their ecological and medical importance, the classification of the kinetoplastid protists (class Kinetoplastea) has attracted much scientific attention for a long time. Morphology-based taxonomic schemes distinguished two major kinetoplastid groups: the strictly parasitic, uniflagellate trypanosomatids and the biflagellate bodonids. Molecular phylogenetic analyses based on 18S rRNA sequence comparison suggested that the trypanosomatids emerged from within the bodonids. However, these analyses revealed a huge evolutionary distance between the kinetoplastids and their closest relatives (euglenids and diplonemids) that makes very difficult the correct inference of the phylogenetic relationships between the different kinetoplastid groups. Using direct PCR amplification of 18S rRNA genes from hydrothermal vent samples, several new kinetoplastid-like sequences have been reported recently. Three of them emerge robustly at the base of the kinetoplastids, breaking the long branch leading to the euglenids and diplonemids. One of these sequences belongs to a close relative of Ichthyobodo necator (a fish parasite) and of the ‘Perkinsiella amoebae’-like endosymbiont of Neoparamoeba spp. amoebae. The authors have studied the reliability of their basal position and used all these slow-evolving basal-emerging sequences as a close outgroup to analyse the phylogeny of the apical kinetoplastids. They thus find a much more stable and resolved kinetoplastid phylogeny, which supports the monophyly of groups that very often emerged as polyphyletic in the trees rooted using the traditional, distant outgroup sequences. A new classification of the class Kinetoplastea is proposed based on the results of the phylogenetic analysis presented. This class is now subdivided into two new subclasses, Prokinetoplastina (accommodating the basal species I. necator and ‘Perkinsiella amoebae’) and Metakinetoplastina (containing the Trypanosomatida together with three additional new orders: Eubodonida, Parabodonida and Neobodonida). The classification of the species formerly included in the genus Bodo is also revised, with the amendment of this genus and the genus Parabodo and the creation of a new genus, Neobodo.


Zootaxa ◽  
2017 ◽  
Vol 4221 (1) ◽  
pp. 1 ◽  
Author(s):  
KANAMI OKU ◽  
HISASHI IMAMURA ◽  
MAMORU YABE

 Phylogenetic relationships of the family Cyclopteridae were reconstructed based on osteological and external characters.  The monophyly of the family was strongly supported by 47 commonly recognized synapomorphies, including six autapomorphies (plus one additional autapomorphy, presence of a dorsal process on the pelvis, recognized after the phylogenetic analysis) among the suborder Cottoidei.  As a result of the cladistic analysis, a single most parsimonious phylogeny was obtained, based on characters in 32 transformation series.  A new classification of Cyclopteridae based on reconstructed relationships, including three subfamilies [Liparopsinae, Cyclopterinae and Eumicrotreminae (newly established)] and four genera (Aptocyclus, Cyclopsis, Cyclopterus and Eumicrotremus), is proposed.    


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