Longitudinal and spatial distribution of GP60 subtypes in human cryptosporidiosis cases in Ireland

2011 ◽  
Vol 139 (12) ◽  
pp. 1945-1955 ◽  
Author(s):  
A. ZINTL ◽  
M. EZZATY-MIRASHEMI ◽  
R. M. CHALMERS ◽  
K. ELWIN ◽  
G. MULCAHY ◽  
...  
Keyword(s):  
Spatial Distribution ◽  
Cryptosporidium Parvum ◽  
Host Immunity ◽  
Published Data ◽  
Infection Rates ◽  
Length Frequency ◽  
Frequency Distributions ◽  
Predominant Subtype ◽  
Protozoan Pathogen ◽  
Gp60 Subtypes

SUMMARYWithin Europe, Ireland has one of the highest reported infection rates with the diarrhoeal protozoan pathogen Cryptosporidium. In this study 249 Cryptosporidium parvum isolates collected from Irish patients between 2000 and 2009 were subtyped by sequence analysis of the GP60 locus. A subsample of 127 isolates was also typed at the MS1 and ML1 loci. GP60 subtype IIaA18G3R1 was the predominant subtype in every year and every season throughout the country. Over the 10-year period there was no evidence that host immunity to the predominant subtype caused a shift in its prevalence. Length frequency distributions of the GP60 TCA/TCG repeats compiled from published data, showed distinct patterns for countries with predominantly zoonotic or anthroponotic transmission cycles, respectively. Although considered to be mostly affected by zoonotic cryptosporidiosis, the GP60 fragment length of Irish C. parvum isolates mirrored that of countries with predominantly human-to-human transmission, indicating more complex routes of infection between livestock and humans. Due to their homogeneity, ML1 and MS1 were not considered useful loci for subtyping C. parvum strains in Ireland.

Population structure of the necrophagous amphipod Eurythenes gryllus (Amphipoda: Gammaridea) from the Atacama Trench (south-east Pacific Ocean)

2002 ◽  
Vol 82 (2) ◽  
pp. 205-211 ◽  
Author(s):  
Michael H. Thurston ◽  
Mario Petrillo ◽  
Norberto Della Croce
Keyword(s):  
Published Data ◽  
Northern Chile ◽  
Length Frequency ◽  
Incipient Speciation ◽  
Frequency Distributions ◽  
Total Length ◽  
East Pacific ◽  
Baited Traps ◽  
Wet Weight ◽  
East Pacific Ocean

Baited traps deployed at 7800 m in the Atacama Trench off northern Chile, captured over 400 specimens of Eurythenes gryllus. This is the greatest depth of occurrence reported for the species. Of the 398 specimens available for study, all but three were female, giving a sex ratio very different from any reported previously. Female specimens measured 29–76 mm in length, and all were immature. Length/frequency distributions based on total length, peraeonite 1 length, and coxa 4 oostegite length were unimodal. Relationships between total length, and peraeonite 1 length, oostegite length, and wet weight were established. Oostegite development appeared to be precocious compared with published data. Subtle differences in peraeon, urosome, gnathopods, coxa 4, peraeopod 7, and epimeron 3 morphology, and the growth of oostegites separate Atacama Trench specimens from previously described material. The morphology exhibited by these specimens lies outside the known variability of E. gryllus, and suggests that this pan-oceanic entity may be undergoing incipient speciation.

Niche Sharing in Intertidal Mollusks and Decapods in Rocky Shore of Easter Island

2019 ◽  
Vol 53 (5) ◽  
pp. 417-422
Author(s):  
P. De los Ríos ◽  
E. Ibáñez Arancibia
Keyword(s):  
Spatial Distribution ◽  
Negative Binomial Distribution ◽  
Binomial Distribution ◽  
Rocky Shore ◽  
Negative Binomial ◽  
Null Model ◽  
Easter Island ◽  
Published Data ◽  
Distribution Analysis ◽  
Field Works

Abstract The coastal marine ecosystems in Easter Island have been poorly studied, and the main studies were isolated species records based on scientific expeditions. The aim of the present study is to apply a spatial distribution analysis and niche sharing null model in published data on intertidal marine gastropods and decapods in rocky shore in Easter Island based in field works in 2010, and published information from CIMAR cruiser in 2004. The field data revealed the presence of decapods Planes minutus (Linnaeus, 1758) and Leptograpsus variegatus (Fabricius, 1793), whereas it was observed the gastropods Nodilittorina pyramidalis pascua Rosewater, 1970 and Nerita morio (G. B. Sowerby I., 1833). The available information revealed the presence of more species in data collected in 2004 in comparison to data collected in 2010, with one species markedly dominant in comparison to the other species. The spatial distribution of species reported in field works revealed that P. minutus and N. morio have aggregated pattern and negative binomial distribution, L. variegatus had uniform pattern with binomial distribution, and finally N. pyramidalis pascua, in spite of aggregated distribution pattern, had not negative binomial distribution. Finally, the results of null model revealed that the species reported did not share ecological niche due to competition absence. The results would agree with other similar information about littoral and sub-littoral fauna for Easter Island.

Dose-Related Toxicity of Copper and Cadmium in Striped Bass Larvae from the Chesapeake Bay: Field Considerations

1988 ◽  
Vol 20 (6-7) ◽  
pp. 39-48 ◽  
Author(s):  
David A. Wright
Keyword(s):  
Chesapeake Bay ◽  
Striped Bass ◽  
Toxic Metal ◽  
Published Data ◽  
Metal Concentrations ◽  
Frequency Distributions ◽  
Order Of Magnitude ◽  
Toxic Concentrations ◽  
And Control ◽  
Spawning Tributaries

Copper and cadmium monitoring in Chesapeake Bay sediments indicates that metal contamination exists in nursery areas for striped bass (Moronesaxatilis), which has been in serious decline over the last 17 years. Whole water metal concentrations in one spawning river were within an order of magnitude of published acutely toxic concentrations. Larval striped bass were exposed in the laboratory to copper and cadmium concentrations which were acutely toxic over a 96h period (24 and 19 µg L−1, respectively), and to sub-lethal concentrations of these metals over a three week period. Larvae from acutely toxic metal treatments, sub-lethal metal concentrations and control tanks were analyzed for cadmium and copper and the frequency distribution of metal body burdens was compared with field data. The distribution of copper concentrations in laboratory-exposed larvae was completely within the range of field specimens, and there was considerable overlap in cadmium frequency distributions from laboratory and field larvae. These results together with other published data suggest that environmental metal concentrations in some spawning tributaries of the Chesapeake Bay may pose a threat to striped bass, and the suggestion is made that greater efforts should be made to link laboratory and field toxicological data.

Reference points for the length-based indicator Lmax5% for use in the assessment of data-limited stocks

2019 ◽  
Vol 76 (7) ◽  
pp. 2125-2139 ◽  
Author(s):  
Tanja Miethe ◽  
Yves Reecht ◽  
Helen Dobby
Keyword(s):  
Life Histories ◽  
Stock Assessment ◽  
Reference Points ◽  
Length Frequency ◽  
Frequency Distributions ◽  
Simulation Tools ◽  
Spawning Potential Ratio ◽  
The Mean ◽  
Commercial Sources ◽  
Length Frequency Data

Abstract In the absence of abundance indices from scientific surveys or commercial sources, reliable length frequency data from sampled commercial catches can be used to provide an indirect assessment of fishing mortality. Length-based indicators are simple metrics which describe length frequency distributions. The length-based indicator Lmax5%, the mean length of the largest 5% of individuals in the catch, combined with appropriately selected reference points, can be used to evaluate the presence of very large individuals in the catch and hence determine exploitation level. Using analytical per-recruit models, we derive reference points consistent with a spawning potential ratio of 40%. The reference points depend on the life history parameters for natural mortality, maturity, and growth (M, Lmat, L∞, k, CVL∞). Using available simulation tools, we investigate the sensitivity of the reference points to errors in these parameters and explore the usefulness of particular reference points for management purposes for stocks with different life histories. The proposed reference points are robust to uncertainty in length at first capture, Lc, and take into account the maturation schedule of a species. For those stocks with high M/k ratios (>1), Lmax5%, combined with the appropriate reference point, can be used to provide a data-limited stock assessment.

Size Distributions and Growth of the Fan-shell Pinna bicolor Gmelin (Mollusca : Eulamellibranchia) in South Australia

1979 ◽  
Vol 30 (1) ◽  
pp. 25 ◽  
Author(s):  
AJ Butler ◽  
FJ Brewster
Keyword(s):  
South Australia ◽  
Adductor Muscle ◽  
Size Distributions ◽  
Limited Data ◽  
Length Frequency ◽  
Age Classes ◽  
Frequency Distributions ◽  
Growth And Survival ◽  
Random Samples ◽  
Variable Success

Fourteen random samples of Pinna bicolor were collected over a period of 31 months from 6 m depth in Gulf St Vincent off Edithburgh, South Australia. The length-frequency distributions suggest that: P. bicolor larvae settle in spring but with variable success; growth of newly settled young is rapid over summer; by age 1 year their modal shell length is about 20 cm; by age 2 it is about 26 cm; they may survive substantially longer than 3 years so that a length-class of mode c. 35 cm is always present and is composed of several age-classes not necessarily equally represented. These suggestions are corroborated by limited data on adductor muscle scars, the development of epibiota on the shells, and the growth and survival of tagged animals over 9 months.

Application of the otolith weight – age relationship for the pilchard, Sardinops sagax neopilchardus

1995 ◽  
Vol 52 (4) ◽  
pp. 657-664 ◽  
Author(s):  
W. J. Fletcher
Keyword(s):  
Maximum Size ◽  
Steady Increase ◽  
Average Weight ◽  
Fish Length ◽  
Natural Mortality ◽  
Length Frequency ◽  
Age Classes ◽  
Frequency Distributions ◽  
Southwestern Australia ◽  
Sardinops Sagax

Adult pilchard (Sardinops sagax neopilchardus) from southwestern Australia held in fish cages for 1 year showed minimal increase in mean length but a steady increase in mean otolith weight (1.61–1.83 mg); this increase (0.22 mg) closely parallels the previously calculated mean difference between adjacent age classes (0.24 mg). Modes in otolith weight frequency distributions of fishery-caught pilchards, previously suggested as corresponding with separate year classes, generally persisted and progressed through subsequent samples. By contrast, fish length frequency distributions of these samples showed no consistent modal progression. The average weight of otoliths for year classes 2–8 were used to calculate growth rates: following sexual maturity, at age 2, males grew to a significantly smaller maximum size than females (L∞ = 162 and 172 mm respectively). The otolith weight – age relationship, validated by following a cohort of unusually low abundance as it moved through the fishery, indicated that recruitment to the fishery generally began at age 2 but was not complete until age 4. These data have been successfully used in forecasting the catch rate of the fishery up to 2 years in advance and providing an estimate of the rate for natural mortality of 0.43.

Age, stucture, growth rates and movements of sea mullet, Mugil cephalus L., and Yellow-eye Mullet, Aldrichetta forsteri (Valenciennes), in the Swan-Avon river system, Western Australia

1981 ◽  
Vol 32 (4) ◽  
pp. 605 ◽  
Author(s):  
CF Chubb ◽  
IC Potter ◽  
CJ Grant ◽  
RCJ Lenanton ◽  
J Wallace
Keyword(s):  
Growth Rates ◽  
River System ◽  
First Year ◽  
Length Frequency ◽  
Frequency Distributions ◽  
Using Data ◽  
The Times ◽  
First Year Of Life ◽  
Breeding Seasons ◽  
System 1

The age structure, growth rates and movements of M. cephalus and A forsteri in the Swan-Avon river system have been investigated using data obtained from beach seining and gill netting carried out between February 1977 and June 1980. Length-frequency data and scale readings show that the populations of both species consist predominantly of 0+ and 1 + fish. From the times when the smallest fry (20-30 mm) were present in the lower part of the river system, and from the condition of the gonads of older fish, the breeding seasons of the sea and yellow-eye mullets have been estimated as extending from March to September and from March to August respectively. The bimodality or polymodality exhibited by the length-frequency distributions for the 0 + year classes suggest that in both species groups of individuals spawn at slightly different times. The range of mean total lengths and weights of animals caught in May near the end of the first year of life was 178-222 mm and 64-119 gin M. cephalus and 136-154 mm and 19-30 g in A. forsteri, which shows that the growth of each of these two species of mullet is relatively very rapid in the Swan-Avon river system. 1 + and 2 + fish tend to leave the estuary for varying periods. Although 0+ fish of both species utilized the shallow banks of the estuary throughout the year. the sea mullet moved further upstream and were not as consistently abundant in the lower estuary. Since 0+ yellow-eye mullet 40-100 mm long were also abundant in marine coastal waters between January and May. and sea mullet of comparable age were rarely observed in these regions, it would appear that M. cephalus is the more estuarine-dependent of the two species. Commercial catches of M. cephalus were greater than those of A. forsteri. This feature can be related in part to the much faster growth rate of M. cephalus, which results in a larger proportion of its youngest year classes reaching the minimum legal size for capture prior to the time when they leave the estuary in large numbers.

Spatial distribution of Antarctic shrimps (Crustacea: Decapoda) by underwater photography

1991 ◽  
Vol 3 (4) ◽  
pp. 363-369 ◽  
Author(s):  
Julian Gutt ◽  
M. Gorny ◽  
W. Arntz
Keyword(s):  
Spatial Distribution ◽  
Continental Shelf ◽  
Weddell Sea ◽  
Small Scale ◽  
Frequency Distributions ◽  
South Eastern ◽  
Direct Observations ◽  
Underwater Photography ◽  
Dispersion Patterns ◽  
Eastern Weddell Sea

Three species of shrimps (Notocrangon antarcticus, Chorismus antarcticus, Nematocarcinus lanceopes) were investigated in the south-eastern Weddell Sea using of underwater photography. Maximum densities of c. 100 specimens per 100 m2 were found for N. antarcticus on the continental shelf (200–600 m) and for N. lanceopes on the slope (800–1200 m). Small-scale dispersion patterns and size-frequency distributions were analyzed within dense concentrations. These direct observations indicate that the behaviour of the three species is adapted to different habitats with Chorismus distribution correlated with that of sponges and Notocrangon with base sediment.

Some Uses of Probability Paper in the Analysis of Size Frequency Distributions

1954 ◽  
Vol 5 (3) ◽  
pp. 513 ◽  
Author(s):  
RM Cassie
Keyword(s):  
Frequency Analysis ◽  
Length Frequency ◽  
Scale Reading ◽  
Frequency Distributions ◽  
Probability Paper ◽  
Size Frequency ◽  
Graph Paper ◽  
Probability Graph ◽  
Age Determinations ◽  
Length Frequency Analysis

Methods are described by which the component groups may be extracted from polymodal size frequency samples by the use of probability graph paper. Four examples are given illustrating: the solution of a distribution with more than two modes and with only one exposed flank; the coordination of fish age determinations by the two methods, length frequency analysis and scale reading; a bivariate sample where the two means coincide though the standard deviations are different; a method of correcting for truncation.

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