High resolution localization of recombination hot spots using sperm typing

1994 ◽  
Vol 7 (3) ◽  
pp. 420-424 ◽  
Author(s):  
Rene Hubert ◽  
Marcy MacDonald ◽  
James Gusella ◽  
Norman Arnheim
2004 ◽  
Vol 359 (1441) ◽  
pp. 141-152 ◽  
Author(s):  
Alec J. Jeffreys ◽  
J. Kim Holloway ◽  
Liisa Kauppi ◽  
Celia A. May ◽  
Rita Neumann ◽  
...  

Meiotic recombination plays a key role in the maintenance of sequence diversity in the human genome. However, little is known about the fine–scale distribution and processes of recombination in human chromosomes, or how these impact on patterns of human diversity. We have therefore developed sperm typing systems that allow human recombination to be analysed at very high resolution. The emerging picture is that human crossovers are far from randomly distributed but instead are targeted into very narrow hot spots that can profoundly influence patterns of haplotype diversity in the human genome. These hot spots provide fundamental information on processes of human crossover and gene conversion, as well as evidence that they can violate basic rules of Mendelian inheritance.


Matter ◽  
2021 ◽  
Author(s):  
Qingzhi An ◽  
Fabian Paulus ◽  
David Becker-Koch ◽  
Changsoon Cho ◽  
Qing Sun ◽  
...  

mBio ◽  
2017 ◽  
Vol 8 (6) ◽  
Author(s):  
Ke Zhang ◽  
Xue-Chang Wu ◽  
Dao-Qiong Zheng ◽  
Thomas D. Petes

ABSTRACT Although meiosis in warm-blooded organisms takes place in a narrow temperature range, meiosis in many organisms occurs over a wide variety of temperatures. We analyzed the properties of meiosis in the yeast Saccharomyces cerevisiae in cells sporulated at 14°C, 30°C, or 37°C. Using comparative-genomic-hybridization microarrays, we examined the distribution of Spo11-generated meiosis-specific double-stranded DNA breaks throughout the genome. Although there were between 300 and 400 regions of the genome with high levels of recombination (hot spots) observed at each temperature, only about 20% of these hot spots were found to have occurred independently of the temperature. In S. cerevisiae , regions near the telomeres and centromeres tend to have low levels of meiotic recombination. This tendency was observed in cells sporulated at 14°C and 30°C, but not at 37°C. Thus, the temperature of sporulation in yeast affects some global property of chromosome structure relevant to meiotic recombination. Using single-nucleotide polymorphism (SNP)-specific whole-genome microarrays, we also examined crossovers and their associated gene conversion events as well as gene conversion events that were unassociated with crossovers in all four spores of tetrads obtained by sporulation of diploids at 14°C, 30°C, or 37°C. Although tetrads from cells sporulated at 30°C had slightly (20%) more crossovers than those derived from cells sporulated at the other two temperatures, spore viability was good at all three temperatures. Thus, despite temperature-induced variation in the genetic maps, yeast cells produce viable haploid products at a wide variety of sporulation temperatures. IMPORTANCE In the yeast Saccharomyces cerevisiae , recombination is usually studied in cells that undergo meiosis at 25°C or 30°C. In a genome-wide analysis, we showed that the locations of genomic regions with high and low levels of meiotic recombination (hot spots and cold spots, respectively) differed dramatically in cells sporulated at 14°C, 30°C, and 37°C. Thus, in yeast, and likely in other non-warm-blooded organisms, genetic maps are strongly affected by the environment.


2019 ◽  
Vol 364 (10) ◽  
Author(s):  
Ilias Fernini

Abstract We report the last observational paper of hot spots for 20 Fanaroff-Riley class II (FR II) sources. These sources are part of a large sample of 98 FR II to study the unification scheme of FR II radio galaxies (RGs) and quasars (QSRs) using the hotspots (HSs) location and morphology. High-resolution VLA observations at 8.4 GHz were conducted for the whole sample. The investigation of HSs properties in FR II radio sources is essential for a better understanding of the dynamics related to the objects and their impact on the surrounding environment. HSs were classified into edged and recessed types, where the former is located at a radio lobe’s outer edge, and the latter is embedded within the lobe. The present sub-sample contains 12 RGs and 8 QSRs. Radio contour maps for each source were presented using the VLA in its A and B configurations. In total, we have identified 18 HSs for these 20 radio sources. The 12 RGs possess 8 edged HSs and 2 recessed HSs. The 8 QSRs possess 6 edged HSs and 2 recessed HSs. Out of the 14 edged HSs, RGs and QSRs possess $\sim57\%$∼57% and $\sim43\%$∼43%, respectively. A thorough morphological discussion of the 20 sources with their HSs is presented in the present work.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Xiaohua Wang ◽  
Ping Xu ◽  
Yan Ren ◽  
Liang Yin ◽  
Shuangling Li ◽  
...  

2018 ◽  
Vol 480 (2) ◽  
pp. 1656-1665 ◽  
Author(s):  
F Leone ◽  
M Gangi ◽  
M Giarrusso ◽  
C Scalia ◽  
M Cecconi ◽  
...  

ABSTRACT We studied the polarized spectrum of the post-AGB binary system 89 Herculis on the basis of data collected with the high-resolution Catania Astrophysical Observatory Spectropolarimeter, HArps-North POlarimeter and Echelle SpectroPolarimetric Device for the Observation of Stars. We find the existence of linear polarization in the strongest metal lines in absorption and with low excitation potentials. Signals are characterized by complex Q and U morphologies varying with the orbital period. We rule out magnetic fields, continuum depolarization due to pulsations and hot spots as the possible origin of this ‘Second Solar Spectrum’-like behaviour. The linear polarization we detected in the Caii 8662-Å line is clear evidence of optical pumping polarization and rules out scattering polarization from free electrons of the circumbinary environment. In the framework of optical pumping due to the secondary star, the observed periodic properties of the spectral line polarization can be justified by two jets, with a flow velocity of a few tens of km s−1, at the basis of that hourglass structure characterizing 89 Herculis. We also discovered linear polarization across the emission profile of metal lines. Numerical simulations show that these polarized profiles could be formed in an undisrupted circumbinary disc rotating at ≤10 km s−1 and with an orientation in the sky in agreement with optical and radio interferometric results. We conclude that the study of aspherical envelopes, the origin of which is not yet completely understood, of PNe and already present in post-AGBs can benefit from high-resolution spectropolarimetry and that this technique can shape envelopes still too far away for interferometry.


2003 ◽  
Vol 33 (3) ◽  
pp. 382-387 ◽  
Author(s):  
M.S. Phillips ◽  
R. Lawrence ◽  
R. Sachidanandam ◽  
A.P. Morris ◽  
D.J. Balding ◽  
...  

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