scholarly journals Differential regulation of triterpene biosynthesis induced by an early failure in cuticle formation in apple

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Luigi Falginella ◽  
Christelle M. Andre ◽  
Sylvain Legay ◽  
Kui Lin-Wang ◽  
Andrew P. Dare ◽  
...  
Keyword(s):  
Fruit Development ◽  
Metabolic Pathways ◽  
Transcript Abundance ◽  
Apple Fruit ◽  
Molecular Profile ◽  
Early Failure ◽  
Oxidosqualene Cyclase ◽  
Cuticle Formation ◽  
The Relationship ◽  
Triterpene Biosynthesis

AbstractWaxy apple cuticles predominantly accumulate ursane-type triterpenes, but the profile shifts with the induction of skin russeting towards lupane-type triterpenes. We previously characterised several key enzymes in the ursane-type and lupane-type triterpene pathways, but this switch in triterpene metabolism associated with loss of cuticle integrity is not fully understood. To analyse the relationship between triterpene biosynthesis and russeting, we used microscopy, RNA-sequencing and metabolite profiling during apple fruit development. We compared the skin of three genetically-close clones of ‘Golden Delicious’ (with waxy, partially russeted and fully russeted skin). We identified a unique molecular profile for the russet clone, including low transcript abundance of multiple cuticle-specific metabolic pathways in the early stages of fruit development. Using correlation analyses between gene transcription and metabolite concentration we found MYB transcription factors strongly associated with lupane-type triterpene biosynthesis. We showed how their transcription changed with the onset of cuticle cracking followed by russeting and that one factor, MYB66, was able to bind the promoter of the oxidosqualene cyclase OSC5, to drive the production of lupeol derivatives. These results provide insights into the breakdown of cuticle integrity leading to russet and how this drives MYB-regulated changes to triterpene biosynthesis.

scholarly journals Temporal Relationship between Ethylene and Ester Production during Maturation of Apple Fruit

HortScience ◽  
1997 ◽  
Vol 32 (3) ◽  
pp. 536C-536
Author(s):  
J.P. Mattheis ◽  
D.A. Buchanan ◽  
J.K. Fellman
Keyword(s):  
Fruit Ripening ◽  
Fruit Development ◽  
Apple Fruit ◽  
Ethylene Concentration ◽  
Major Transition ◽  
Apple Cultivars ◽  
Fuji Apple ◽  
Harvest Maturity ◽  
Atmosphere Storage ◽  
The Relationship

Quantitative and qualitative changes in net production of volatile compounds by apples occurs during fruit development with a major transition to ester production occurring as fruit ripening begins. Ester production during fruit ripening is an ethylene-mediated response; however, differences in maturation patterns among apple cultivars led us to examine the relationship between ester production and onset of the ethylene climacteric in several commercial apple cultivars. Emission of volatile esters as a function of apple fruit development was evaluated for `Royal Gala', `Bisbee Delicious', `Granny Smith', and `Fuji' apple fruit during two harvest seasons. Apples were harvested weekly and analyses of harvest maturity were performed the day after harvest. Non-ethylene volatiles were collected from intact fruit using dynamic headspace sampling onto Tenax traps. Fruit from each harvest was stored at 1°C in air for 5 months (3 months for `Royal Gala') plus 7 days ripening at 20°C, then apples were evaluated for the development of disorders. The transition to ester production occurred after internal ethylene exceeded 0.1 μL for `Royal Gala', `Bisbee Delicious', and `Fuji'. Ester emission by `Granny Smith' apples remained low throughout the harvest period. Increased ester emission occurred after the optimum harvest date (as determined by the starch index and internal ethylene concentration) for controlled-atmosphere storage of `Bisbee Delicious' and prior to optimum maturity for `Royal Gala' and `Fuji'. A relationship between the potential for development of superficial scald and ester production at harvest was evident only for `Bisbee Delicious' apples.

Молекулярная биология менингиом головного мозга

2017 ◽  
pp. 82-91
Author(s):  
В.А. Бывальцев ◽  
И.А. Степанов ◽  
Е.Г. Белых ◽  
А.И. Яруллина
Keyword(s):  
Gene Therapy ◽  
Proton Therapy ◽  
Genetic Factors ◽  
Intracranial Tumor ◽  
Molecular Profile ◽  
Genetic Changes ◽  
Treatment Techniques ◽  
Downstream Effects ◽  
Si Rna ◽  
The Relationship

Цель обзора - анализ современных данных литературы о нарушении внутриклеточных сигнальных путей, играющих ведущую роль в развитии менингиом, генетических и молекулярных профилях данной группы опухолей. К настоящему времени изучено множество аберрантных сигнальных внутриклеточных путей, которые играют важнейшую роль в развитии менингиом головного мозга. Четкое понимание поврежденных внутриклеточных каскадов поможет изучить влияние генетических мутаций и их эффектов на менингиомогенез. Подробное исследование генетического и молекулярного профиля менингиом позволит сделать первый уверенный шаг в разработке более эффективных методов лечения данной группы интракраниальных опухолей. Хромосомы 1, 10, 14, 22 и связанные с ними генные мутации ответственны за рост и прогрессию менингиом. Предполагается, что только через понимание данных генетических повреждений будут реализованы новейшие эффективные методы лечения. Будущая терапия будет включать в себя комбинации таргетных молекулярных агентов, в том числе генную терапию, малые интерферирующие РНК, протонную терапию и другие методы воздействия, как результат дальнейшего изучения генетических и биологических изменений, характерных для менингеальных опухолей. Meningiomas are by far the most common tumors arising from the meninges. A myriad of aberrant signaling pathways involved with meningioma tumorigenesis, have been discovered. Understanding these disrupted pathways will aid in deciphering the relationship between various genetic changes and their downstream effects on meningioma pathogenesis. An understanding of the genetic and molecular profile of meningioma would provide a valuable first step towards developing more effective treatments for this intracranial tumor. Chromosomes 1, 10, 14, 22, their associated genes, have been linked to meningioma proliferation and progression. It is presumed that through an understanding of these genetic factors, more educated meningioma treatment techniques can be implemented. Future therapies will include combinations of targeted molecular agents including gene therapy, si-RNA mediation, proton therapy, and other approaches as a result of continued progress in the understanding of genetic and biological changes associated with meningiomas.

scholarly journals Mitochondrial Sirtuins in Reproduction

Antioxidants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1047
Author(s):  
Giovanna Di Emidio ◽  
Stefano Falone ◽  
Paolo Giovanni Artini ◽  
Fernanda Amicarelli ◽  
Anna Maria D’Alessandro ◽  
...  
Keyword(s):  
Stress Responses ◽  
Metabolic Pathways ◽  
Redox Balance ◽  
Antioxidant Defenses ◽  
Metabolic Abnormalities ◽  
Female Reproduction ◽  
Mitochondrial Dysfunctions ◽  
Early Embryos ◽  
The Relationship

Mitochondria act as hubs of numerous metabolic pathways. Mitochondrial dysfunctions contribute to altering the redox balance and predispose to aging and metabolic alterations. The sirtuin family is composed of seven members and three of them, SIRT3-5, are housed in mitochondria. They catalyze NAD+-dependent deacylation and the ADP-ribosylation of mitochondrial proteins, thereby modulating gene expression and activities of enzymes involved in oxidative metabolism and stress responses. In this context, mitochondrial sirtuins (mtSIRTs) act in synergistic or antagonistic manners to protect from aging and aging-related metabolic abnormalities. In this review, we focus on the role of mtSIRTs in the biological competence of reproductive cells, organs, and embryos. Most studies are focused on SIRT3 in female reproduction, providing evidence that SIRT3 improves the competence of oocytes in humans and animal models. Moreover, SIRT3 protects oocytes, early embryos, and ovaries against stress conditions. The relationship between derangement of SIRT3 signaling and the imbalance of ROS and antioxidant defenses in testes has also been demonstrated. Very little is known about SIRT4 and SIRT5 functions in the reproductive system. The final goal of this work is to understand whether sirtuin-based signaling may be taken into account as potential targets for therapeutic applications in female and male infertility.

scholarly journals Identification of Genes with Potential Roles in Apple Fruit Development and Biochemistry through Large-Scale Statistical Analysis of Expressed Sequence Tags

2006 ◽  
Vol 141 (3) ◽  
pp. 811-824 ◽  
Author(s):  
Sunchung Park ◽  
Nobuko Sugimoto ◽  
Matthew D. Larson ◽  
Randy Beaudry ◽  
Steven van Nocker
Keyword(s):  
Statistical Analysis ◽  
Fruit Development ◽  
Expressed Sequence Tags ◽  
Large Scale ◽  
Apple Fruit ◽  
Expressed Sequence

Metabolism-driven post-translational modifications of H3K9 in early bovine embryos

Reproduction ◽  
2021 ◽  
Vol 162 (3) ◽  
pp. 181-191
Author(s):  
Jessica Ispada ◽  
Aldcejam Martins da Fonseca Junior ◽  
Otávio Luiz Ramos Santos ◽  
Camila Bruna de Lima ◽  
Erika Cristina dos Santos ◽  
...  
Keyword(s):  
Metabolic Pathways ◽  
Developmental Stages ◽  
De Novo ◽  
Blastocyst Stage ◽  
Developmental Model ◽  
Bovine Embryos ◽  
Acetyl Coa ◽  
Post Translational Modifications ◽  
The Relationship ◽  
Different Levels

Metabolic and molecular profiles were reported as different for bovine embryos with distinct kinetics during the first cleavages. In this study, we used this same developmental model (fast vs slow) to determine if the relationship between metabolism and developmental kinetics affects the levels of acetylation or tri-methylation at histone H3 lysine 9 (H3K9ac and H3K9me3, respectively). Fast and slow developing embryos presented different levels of H3K9ac and H3K9me3 from the earliest stages of development (40 and 96 hpi) and up to the blastocyst stage. For H3K9me3, both groups of embryos presented a wave of demethylation and de novo methylation, although it was more pronounced in fast than slow embryos, resulting in blastocysts with higher levels of this mark. The H3K9ac reprogramming profile was distinct between kinetics groups. While slow embryos presented a wave of deacetylation, followed by an increase in this mark at the blastocyst stage, fast embryos reduced this mark throughout all the developmental stages studied. H3K9me3 differences corresponded to writer and eraser transcript levels, while H3K9ac patterns were explained by metabolism-related gene expression. To verify if metabolic differences could alter levels of H3K9ac, embryos were cultured with sodium-iodoacetate (IA) or dichloroacetate (DCA) to disrupt the glycolytic pathway or increase acetyl-CoA production, respectively. IA reduced H3K9ac while DCA increased H3K9ac in blastocysts. Concluding, H3K9me3 and H3K9ac patterns differ between embryos with different kinetics, the second one explained by metabolic pathways involved in acetyl-CoA production. So far, this is the first study demonstrating a relationship between metabolic differences and histone post-translational modifications in bovine embryos.

Ion Relations of Apple Fruit Tissue During Fruit Development and Ripening. I. Cation Leakage

1981 ◽  
Vol 8 (2) ◽  
pp. 155 ◽  
Author(s):  
IB Ferguson ◽  
CB Watkins
Keyword(s):  
Fruit Development ◽  
Tissue Concentration ◽  
Apple Fruit ◽  
Divalent Ions ◽  
Fruit Tissue ◽  
Fruit Development And Ripening ◽  
Ion Relations ◽  
Calcium Magnesium ◽  
Calcium And Magnesium ◽  
Potassium Leakage

Leakage of calcium, magnesium and potassium from discs of cortical apple fruit tissue was followed through fruit development and ripening. Leakage of potassium always exceeded that of calcium and magnesium and was little affected by the external presence of the divalent ions. Calcium and magnesium leakage was markedly increased by the external presence of either ion. In tissue from both freshly picked fruit and that taken from storage, potassium and magnesium leakage increased when the fruit was in an advanced state of senescence, but calcium leakage decreased. During fruit development, leakage of all cations was closely related to availability as expressed in tissue concentration. There was a marked increase in potassium leakage in association with the respiratory climacteric.

scholarly journals Dissecting the Microbial Community Structure of Internal Organs During the Early Postmortem Period in a Murine Corpse Model

2021 ◽  
Author(s):  
Ruina Liu ◽  
Kai Zhang ◽  
Huan Li ◽  
Qinru Sun ◽  
Xin Wei ◽  
...  
Keyword(s):  
Metabolic Pathways ◽  
The Body ◽  
Time Since Death ◽  
Limited Information ◽  
Microbial Composition ◽  
Internal Organs ◽  
Organ Specific ◽  
Forensic Microbiology ◽  
The Relationship ◽  
Early Postmortem

Abstract Background Microorganisms inhabit and proliferate throughout the body both externally and internally, which are the primary mediators of putrefaction after death. However, limited information is available about the changes in the postmortem microbiota of extraintestinal body sites in the early decomposition stage of mammalian corpses. Results This study applied 16S rRNA barcoding to investigate microbial composition variations among different organs and the relationship between microbial communities and time since death over 1 day of decomposition. During 1 day of decomposition, Agrobacterium, Prevotella, Bacillus, and Turicibacter were regarded as time-relevant genera in internal organs at different timepoints. Pathways associated with lipid, amino acid, carbohydrate and terpenoid and polyketide metabolism were significantly enriched at 8 hours than that at 0.5 or 4 hours. The microbiome compositions and postmortem metabolic pathways differed by time since death, and more importantly, these alterations were organ specific. Conclusion The dominant microbes differed by organ, while they tended toward similarity as decomposition progressed. The observed thanatomicrobiome variation by body site provides new knowledge into decomposition ecology and forensic microbiology. Additionally, the microbes detected at 0.5 hours in internal organs may inform a new direction for organ transplantation.

scholarly journals Transcription analysis of apple fruit development using cDNA microarrays

2009 ◽  
Vol 5 (4) ◽  
pp. 685-698 ◽  
Author(s):  
V. Soglio ◽  
F. Costa ◽  
J. W. Molthoff ◽  
W. M. J. Weemen-Hendriks ◽  
H. J. Schouten ◽  
...  
Keyword(s):  
Fruit Development ◽  
Cdna Microarrays ◽  
Apple Fruit ◽  
Transcription Analysis

scholarly journals Function, Detection and Alteration of Acylcarnitine Metabolism in Hepatocellular Carcinoma

Metabolites ◽  
2019 ◽  
Vol 9 (2) ◽  
pp. 36 ◽  
Author(s):  
Shangfu Li ◽  
Dan Gao ◽  
Yuyang Jiang
Keyword(s):  
Hepatocellular Carcinoma ◽  
Metabolic Pathways ◽  
Poor Prognosis ◽  
Current Evidence ◽  
Long Chain Fatty Acids ◽  
Primary Malignancy ◽  
Diagnosis And Prognosis ◽  
Analytical Platforms ◽  
The Relationship ◽  
Long Chain

Acylcarnitines play an essential role in regulating the balance of intracellular sugar and lipid metabolism. They serve as carriers to transport activated long-chain fatty acids into mitochondria for β-oxidation as a major source of energy for cell activities. The liver is the most important organ for endogenous carnitine synthesis and metabolism. Hepatocellular carcinoma (HCC), a primary malignancy of the live with poor prognosis, may strongly influence the level of acylcarnitines. In this paper, the function, detection and alteration of acylcarnitine metabolism in HCC were briefly reviewed. An overview was provided to introduce the metabolic roles of acylcarnitines involved in fatty acid β-oxidation. Then different analytical platforms and methodologies were also briefly summarised. The relationship between HCC and acylcarnitine metabolism was described. Many of the studies reported that short, medium and long-chain acylcarnitines were altered in HCC patients. These findings presented current evidence in support of acylcarnitines as new candidate biomarkers for studies on the pathogenesis and development of HCC. Finally we discussed the challenges and perspectives of exploiting acylcarnitine metabolism and its related metabolic pathways as a target for HCC diagnosis and prognosis.

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