scholarly journals Mn oxide formation by phototrophs: Spatial and temporal patterns, with evidence of an enzymatic superoxide-mediated pathway

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Dominique L. Chaput ◽  
Alexandré J. Fowler ◽  
Onyou Seo ◽  
Kelly Duhn ◽  
Colleen M. Hansel ◽  
...  

AbstractManganese (Mn) oxide minerals influence the availability of organic carbon, nutrients and metals in the environment. Oxidation of Mn(II) to Mn(III/IV) oxides is largely promoted by the direct and indirect activity of microorganisms. Studies of biogenic Mn(II) oxidation have focused on bacteria and fungi, with phototrophic organisms (phototrophs) being generally overlooked. Here, we isolated phototrophs from Mn removal beds in Pennsylvania, USA, including fourteen Chlorophyta (green algae), three Bacillariophyta (diatoms) and one cyanobacterium, all of which consistently formed Mn(III/IV) oxides. Isolates produced cell-specific oxides (coating some cells but not others), diffuse biofilm oxides, and internal diatom-specific Mn-rich nodules. Phototrophic Mn(II) oxidation had been previously attributed to abiotic oxidation mediated by photosynthesis-driven pH increases, but we found a decoupling of Mn oxide formation and pH alteration in several cases. Furthermore, cell-free filtrates of some isolates produced Mn oxides at specific time points, but this activity was not induced by Mn(II). Manganese oxide formation in cell-free filtrates occurred via reaction with the oxygen radical superoxide produced by soluble extracellular proteins. Given the known widespread ability of phototrophs to produce superoxide, the contribution of phototrophs to Mn(II) oxidation in the environment may be greater and more nuanced than previously thought.

2015 ◽  
Vol 44 (3) ◽  
pp. 1039-1045 ◽  
Author(s):  
Mohammad Mahdi Najafpour ◽  
Emad Amini
Keyword(s):  
Low Cost ◽  
Mn Oxide ◽  

Nanolayered Mn oxides have been prepared by a very simple, low-cost and high-yield method using soap, KOH, MnCl2and H2O2.


Author(s):  
Jorge Leite ◽  
Sandra Carvalho ◽  
Munir Boodhwani ◽  
Felipe Fregni

This chapter focuses on basic principles of survival analysis for the clinical investigator. Survival analysis is a specific type of standardized statistical analysis that focuses on assessing the time elapsed since the exposure/intervention to the occurrence of an event. Important concepts such as median survival time, cumulative probability of survival at specific time points by using Kaplan-Meier estimators, and the use of the use of log rank (Mantel–Cox) to compare survival functions are discussed. This chapter also discusses the concept of censoring, which happens when the event occurs outside the pre-specified time window, and how to develop hazard functions when there are several interrelated factors that can contribute to the increase or decrease of survival probability.


Catalysts ◽  
2019 ◽  
Vol 9 (4) ◽  
pp. 322 ◽  
Author(s):  
Raúl Benito-Arenas ◽  
Sandra Zárate ◽  
Julia Revuelta ◽  
Agatha Bastida

Chondroitin sulfates are linear anionic sulfated polysaccharides found in biological tissues, mainly within the extracellular matrix, which are degraded and altered by specific lyases depending on specific time points. These polysaccharides have recently acquired relevance in the pharmaceutical industry due to their interesting therapeutic applications. As a consequence, chondroitin sulfate (CS) lyases have been widely investigated as tools for the development of new pharmaceuticals based on these polysaccharides. This review focuses on the major breakthrough represented by chondroitin sulfate-degrading enzymes and their structures and mechanisms of function in addition to their major applications.


1991 ◽  
Vol 55 (380) ◽  
pp. 423-434 ◽  
Author(s):  
M. K. Nimfopoulos ◽  
R. A. D. Pattrick

AbstractThe western Rhodope massif contains a significant number of ‘battery grade’ Mn-oxide deposits which are best developed in the area near Kato Nevrokopi, Drama district, N. Greece. Economic Mn-oxide ore concentrations are confined to fault zones and related karsts in marbles. The mineralisation has formed by weathering of hydrothermal veins that were genetically related to Oligocene magmatism.At Kato Nevrokopi, progressive and continuous weathering of primary, hydrothermal veins of rhodochrosite, mixed sulphide, quartz and ‘black calcite’ (calcite and todorokite) has resulted in the formation of the assemblage MnO-gel-(amorphous Mn-oxide)-todorokite-azurite-goethite-cerussite in the veins and the assemblage MnO-gel-nsutite-chalcophanite-birnessite-cryptomelane-pyrolusite and malachite and amorphous Fe-oxides in karstic cavities.The fs2 and fO2 of the hydrothermal fluids increased with time. The breakdown of the hypogene Mn-carbonate was aided by the production of an acidic fluid due to the oxidation of sulphides. Precipitation of the supergene ores was caused by neutralisation of the fluids due to reaction with the host marble and to mixing of relatively reduced fluids with oxygenated surface water in a fluctuation water table regime. Zinc was also mobile during weathering and became concentrated in the intermediate Mn-oxides, effectively stabilising their structures. The mineral paragenesis records the progressive oxidation of the ore and the appearance of less hydrated Mn-oxides, low in alkalis and alkaline earths.


2016 ◽  
Vol 96 (3) ◽  
pp. 376-385 ◽  
Author(s):  
Kayla Bilsborrow ◽  
Yolande M. Seddon ◽  
Jennifer Brown ◽  
Cheryl Waldner ◽  
Joseph M. Stookey

A novel behavioural test using a handling chute was evaluated over two trials as an objective method to assess pain in piglets following castration. Piglet (n = 98) navigation time (NT) through a handling chute was measured at specific time points up to 24 h post treatment. In trial 1, comparing the NT of castrates (C) and sham castrates (SC), C piglets had a longer NT than SC at 0 and 15 min post treatment (P < 0.05), with no differences thereafter. In trial 2, the effect of an analgesic to control postoperative pain on NT was examined, with castrated piglets given a half (CH) or full (CF) dose of meloxicam 1 h prior to treatment, compared with piglets castrated and given saline (CS) or sham castrated and given saline (SS). Post treatment, CS piglets had a longer NT than SS at 0 min (P < 0.005), and at 15 min, piglets CS had a longer NT than all groups (P < 0.001). No significant associations were found between piglet behaviour in the home pen and NT during the 60 min following treatment. These data demonstrate potential for the use of a handling chute to measure NT as a quick, standardized, method to assess piglet pain in response to castration.


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 71-71
Author(s):  
Alfonso Quintás-Cardama ◽  
Xuelin Huang ◽  
Sangbum Choi ◽  
Hagop M Kantarjian ◽  
Jorge E. Cortes

Abstract Abstract 71 Background: The NCCN and the European LeukemiaNet guidelines for monitoring patients with chronic myeloid leukemia in chronic phase (CML-CP) provide recommendations for response assessment and treatment at 3, 6, 12, and 18 months based on evidence obtained in clinical trials. A clear limitation of such guidelines is their applicability at time-points different from those pre-specified. To overcome these limitations we have developed a novel statistical approach to CML prognostication. Method: In order to build our prognostic model, we used two cohorts of patients with CML-CP treated in the frontline DASISION phase III study (CA180-056) and the cohort of patients treated after imatinib failure in the dasatinib dose-optimization phase III study (CA180-034). Progression-free survival (PFS) was defined as any of the following: doubling of white cell count to >20×109/L in the absence of complete hematologic response (CHR); loss of CHR; increase in Ph+ BM metaphases to >35%; transformation to AP/BP; or death. A modified Cox proportional hazards model was used to build a prognostic nomogram. Results: A total of 1189 patients were used for this analysis: 519 from DASISION (259 dasatinib and 260 imatinib) and 670 from CA180-034. First, we devised a model to link a BCR-ABL1/ABL1 ratios (according to the International Standard) obtained at specific time points during the course of treatment with patientsÕ outcomes (PFS). For instance, at 18 months after front-line treatment, the future PFS probabilities are shown in Figure 1A. At 6 months after second-line treatment, the future PFS probabilities are shown in Figure 1B. Once the model was validated at specific time points, we next designed a nomogram to calculate patients' outcomes at any time point during the course of therapy by plotting ‘master PFS curves’ derived from the patient cohorts according to time. Figure 2A&B give the 90% quantile of the remaining PFS for patients at any time after front-line and second-line treatment, respectively. These may be used a guideline for considering other treatment options when patients' BCR-ABL1/ABL1 ratios exceed these values. Figure 2 shows that the remaining PFS times for either front- or second-line treated patients depend mostly on the current BCR-ABL/ABL ratio and less on the time at which the ratio is obtained, reflected by the fact that the curves showing future PFS probabilities are characterized by smooth slopes. Figure 2A shows that 10% of front-line treated patients whose BCR-ABL1/ABL1 ratios are 50% or higher will have remaining PFS times of less than 12 months. If BCR-ABL1/ABL1 ratios are 75% or higher, then 10% of them will have remaining PFS times of less than 6 months. Similarly, Figure 2B shows that for second-line treated patients whose BCR-ABL1/ABL1 ratios are 50% or higher, 10% of them will have remaining PFS time shorter than 6 months. Conclusion: We have designed a nomogram that predicts PFS for patients treated in the frontline and second line settings according to their BCR-ABL1/ABL1 ratios, independent from the time at which these ratios are obtained. A similar approach has been taken to predict failure-free and overall survival and will be presented at the meeting. This prognostic tool is readily available for clinical purposes and might greatly facilitate monitoring and prognostication in CML. Disclosures: No relevant conflicts of interest to declare.


Gene Therapy ◽  
2009 ◽  
Vol 16 (11) ◽  
pp. 1329-1339 ◽  
Author(s):  
K Aravindaram ◽  
H-H Yu ◽  
C-W Lan ◽  
P-H Wang ◽  
Y-H Chen ◽  
...  

2020 ◽  
Vol 23 (1) ◽  
pp. 28-40
Author(s):  
Wojciech Jurkowski

Spatial and temporal patterns of railway commuting to Wrocław The development and optimisation of the agglomeration and regional railway system is one of the basic challenges for the regional policy of the local government in Poland. There are many studies focusing on the problems of functioning of railway transport in agglomeration areas, however there are less studies dealing with the issue of demand for railway services during the day. It is a evident research gap. The main purpose of this article is to recognize the spatial and temporal differentiation of the railway passenger volume in Wrocław. The article presents the number of passengers arriving and departing from Wroclaw according to particular directions, and identifies peak hours based on the daily distribution of passenger volume in specific time intervals.


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