scholarly journals Modelling a multiplex brain network by local transfer entropy

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Fabrizio Parente ◽  
Alfredo Colosimo

AbstractThis paper deals with the information transfer mechanisms underlying causal relations between brain regions under resting condition. fMRI images of a large set of healthy individuals from the 1000 Functional Connectomes Beijing Zang dataset have been considered and the causal information transfer among brain regions studied using Transfer Entropy concepts. Thus, we explored the influence of a set of states in two given regions at time t (At Bt.) over the state of one of them at a following time step (Bt+1) and could observe a series of time-dependent events corresponding to four kinds of interactions, or causal rules, pointing to (de)activation and turn off mechanisms and sharing some features with positive and negative functional connectivity. The functional architecture emerging from such rules was modelled by a directional multilayer network based upon four interaction matrices and a set of indexes describing the effects of the network structure in several dynamical processes. The statistical significance of the models produced by our approach was checked within the used database of homogeneous subjects and predicts a successful extension, in due course, to detect differences among clinical conditions and cognitive states.

2020 ◽  
Author(s):  
Fabrizio Parente ◽  
Colosimo Alfredo

Abstract In this work we report on a systematic study of the causal relations in information transfer mechanisms between brain regions under resting condition. The 1000 Functional Connectomes Beijing Zang dataset was used, which includes brain functional images of 180 healthy individuals. We first characterize the information transfer mechanisms by means of Transfer Entropy concepts and, on this basis, propose a set of indexes concerning the whole functional brain network in the frame of a multilayer description. By exploring the influence of a set of states in two given regions at time t (At; Bt.) over the state of one of them at a following time step (Bt+1), a series of time-dependent events can be observed pointing to four kinds of significant interactions, namely:- (de)activation in the same state (ActS); - (de)activation in the oppostive state (ActO);- turn off in the same state (TfS); - turn off in the opposite state (TfO).This leads to four specific rules and to a directional multilayer network based upon four interaction matrices, one for each rule. By hierarchical clustering methods the four rules can be reduced to two sharing some similarities with positive and negative functional connectivity. The global architecture of the four interactions and the features of single nodes were initially explored under stationary conditions. The information transfer mechanisms on the ensuing functional network were studied by specific indexes describing in a multilayer frame the effects of the network structure in several dynamical processes. The healthy subjects database was used to carefully calibrate and validate the proposed approach, whose final aim remains the detection of clinical differences among individuals, as well as among different cognitive states.


2019 ◽  
Author(s):  
Mike Li ◽  
Yinuo Han ◽  
Matthew J. Aburn ◽  
Michael Breakspear ◽  
Russell A. Poldrack ◽  
...  

AbstractA key component of the flexibility and complexity of the brain is its ability to dynamically adapt its functional network structure between integrated and segregated brain states depending on the demands of different cognitive tasks. Integrated states are prevalent when performing tasks of high complexity, such as maintaining items in working memory, consistent with models of a global workspace architecture. Recent work has suggested that the balance between integration and segregation is under the control of ascending neuromodulatory systems, such as the noradrenergic system. In a previous large-scale nonlinear oscillator model of neuronal network dynamics, we showed that manipulating neural gain led to a ‘critical’ transition in phase synchrony that was associated with a shift from segregated to integrated topology, thus confirming our original prediction. In this study, we advance these results by demonstrating that the gain-mediated phase transition is characterized by a shift in the underlying dynamics of neural information processing. Specifically, the dynamics of the subcritical (segregated) regime are dominated by information storage, whereas the supercritical (integrated) regime is associated with increased information transfer (measured via transfer entropy). Operating near to the critical regime with respect to modulating neural gain would thus appear to provide computational advantages, offering flexibility in the information processing that can be performed with only subtle changes in gain control. Our results thus link studies of whole-brain network topology and the ascending arousal system with information processing dynamics, and suggest that the constraints imposed by the ascending arousal system constrain low-dimensional modes of information processing within the brain.Author summaryHigher brain function relies on a dynamic balance between functional integration and segregation. Previous work has shown that this balance is mediated in part by alterations in neural gain, which are thought to relate to projections from ascending neuromodulatory nuclei, such as the locus coeruleus. Here, we extend this work by demonstrating that the modulation of neural gain alters the information processing dynamics of the neural components of a biophysical neural model. Specifically, we find that low levels of neural gain are characterized by high Active Information Storage, whereas higher levels of neural gain are associated with an increase in inter-regional Transfer Entropy. Our results suggest that the modulation of neural gain via the ascending arousal system may fundamentally alter the information processing mode of the brain, which in turn has important implications for understanding the biophysical basis of cognition.


2020 ◽  
Author(s):  
Veronica Mäki-Marttunen

Arousal is a potent mechanism that provides the brain with functional flexibility and adaptability to external conditions. Within the wake state, arousal levels driven by activity in the neuromodulatory systems are related to specific signatures of neural activation and brain synchrony. However, direct evidence is still lacking on the varying effects of arousal on macroscopic brain characteristics and across a variety of cognitive states in humans. Using a concurrent fMRI-pupillometry approach, we used pupil size as a proxy for arousal and obtained patterns of brain integration associated with increasing arousal levels. We carried out this analysis on resting-state data and data from two attentional tasks implicating different cognitive processes. We found that an increasing level of arousal was related to a non-linear pattern of brain integration, with increasing brain integration from intermediate to larger arousal levels. This effect was prominent in the salience network in all tasks, while other regions showed task-specificity. Furthermore, task performance was also related to arousal level, with accuracy being highest at intermediate levels of arousal across tasks. Taken together, our study provides evidence in humans for pupil size as an index of brain network state, and supports the role of arousal as a switch that drives brain coordination in specific brain regions according to the cognitive state.


2021 ◽  
pp. 1-23
Author(s):  
Enrico Amico ◽  
Kausar Abbas ◽  
Duy Anh Duong-Tran ◽  
Uttara Tipnis ◽  
Meenusree Rajapandian ◽  
...  

Modeling communication dynamics in the brain is a key challenge in network neuroscience. We present here a framework that combines two measurements for any system where different communication processes are taking place on top of a fixed structural topology: Path Processing Score (PPS) estimates how much the brain signal has changed or has been transformed between any two brain regions (source and target); Path Broadcasting Strength (PBS) estimates the propagation of the signal through edges adjacent to the path being assessed. We use PPS and PBS to explore communication dynamics in large-scale brain networks. We show that brain communication dynamics can be divided into three main “communication regimes” of information transfer: absent communication (no communication happening); relay communication (information is being transferred almost intact); transducted communication (the information is being transformed). We use PBS to categorize brain regions based on the way they broadcast information. Subcortical regions are mainly direct broadcasters to multiple receivers; Temporal and frontal nodes mainly operate as broadcast relay brain stations; Visual and somato-motor cortices act as multi-channel transducted broadcasters. This work paves the way towards the field of brain network information theory by providing a principled methodology to explore communication dynamics in large-scale brain networks.


2021 ◽  
Vol 15 ◽  
Author(s):  
Zhongliang Yin ◽  
Yue Wang ◽  
Minghao Dong ◽  
Shenghan Ren ◽  
Haihong Hu ◽  
...  

Face processing is a spatiotemporal dynamic process involving widely distributed and closely connected brain regions. Although previous studies have examined the topological differences in brain networks between face and non-face processing, the time-varying patterns at different processing stages have not been fully characterized. In this study, dynamic brain networks were used to explore the mechanism of face processing in human brain. We constructed a set of brain networks based on consecutive short EEG segments recorded during face and non-face (ketch) processing respectively, and analyzed the topological characteristic of these brain networks by graph theory. We found that the topological differences of the backbone of original brain networks (the minimum spanning tree, MST) between face and ketch processing changed dynamically. Specifically, during face processing, the MST was more line-like over alpha band in 0–100 ms time window after stimuli onset, and more star-like over theta and alpha bands in 100–200 and 200–300 ms time windows. The results indicated that the brain network was more efficient for information transfer and exchange during face processing compared with non-face processing. In the MST, the nodes with significant differences of betweenness centrality and degree were mainly located in the left frontal area and ventral visual pathway, which were involved in the face-related regions. In addition, the special MST patterns can discriminate between face and ketch processing by an accuracy of 93.39%. Our results suggested that special MST structures of dynamic brain networks reflected the potential mechanism of face processing in human brain.


2021 ◽  
Author(s):  
Alexis Porter ◽  
Ashley M. Nielsen ◽  
Caterina Gratton

Completing complex tasks requires flexible integration of functions across brain regions. While studies have shown that functional networks are altered across tasks, recent work highlights that brain networks exhibit substantial individual differences. Here we asked whether individual differences are important for predicting brain network interactions across cognitive states. We trained classifiers to decode state using data from single person "precision" fMRI datasets across 5 diverse cognitive states. Classifiers were then tested on either independent sessions from the same person or new individuals. Classifiers were able to decode task states in both the same and new participants above chance. However, classification performance was significantly higher within a person, a pattern consistent across model types, datasets, tasks, and feature subsets. This suggests that individualized approaches can uncover robust features of brain states, including features obscured in cross-subject analyses. Individualized approaches have potential to deepen our understanding of brain interactions during complex cognition.


2019 ◽  
Author(s):  
Wenpo Yao ◽  
Jun Wang

AbstractIdentifying networked information exchanges among brain regions is important for understanding the brain structure. We employ symbolic transfer entropy to facilitate the construction of networked information interactions for EEGs of 22 epileptics and 22 healthy subjects. The epileptic patients during seizure-free interval have lower information transfer in each individual and whole brain regions than the healthy subjects. Among all of the brain regions, the information flows out of and into the brain area of O1 of the epileptic EEGs are significantly lower than those of the healthy (p<0.0005), and the information flow from F7 to F8 (p<0.00001) is particularly promising to discriminate the two groups of EEGs. Moreover, Shannon entropy of probability distributions of information exchanges suggests that the healthy EEGs have higher complexity and irregularity than the epileptic brain electrical activities. By characterizing the brain networked information interactions, our findings highlight the long-term reduced information exchanges, degree of brain interactivities and informational complexity of the epileptic EEG.


2019 ◽  
Vol 3 (2) ◽  
pp. 567-588 ◽  
Author(s):  
Kirsten Hilger ◽  
Christian J. Fiebach

Attention-deficit/hyperactivity disorder (ADHD) is one of the most common neurodevelopmental disorders with significant and often lifelong effects on social, emotional, and cognitive functioning. Influential neurocognitive models of ADHD link behavioral symptoms to altered connections between and within functional brain networks. Here, we investigate whether network-based theories of ADHD can be generalized to understanding variations in ADHD-related behaviors within the normal (i.e., clinically unaffected) adult population. In a large and representative sample, self-rated presence of ADHD symptoms varied widely; only 8 out of 291 participants scored in the clinical range. Subject-specific brain network graphs were modeled from functional MRI resting-state data and revealed significant associations between (nonclinical) ADHD symptoms and region-specific profiles of between-module and within-module connectivity. Effects were located in brain regions associated with multiple neuronal systems including the default-mode network, the salience network, and the central executive system. Our results are consistent with network perspectives of ADHD and provide further evidence for the relevance of an appropriate information transfer between task-negative (default-mode) and task-positive brain regions. More generally, our findings support a dimensional conceptualization of ADHD and contribute to a growing understanding of cognition as an emerging property of functional brain networks.


2017 ◽  
Vol 2017 ◽  
pp. 1-9
Author(s):  
Zhengkui Weng ◽  
Bin Wang ◽  
Jie Xue ◽  
Baojie Yang ◽  
Hui Liu ◽  
...  

As a complex network of many interlinked brain regions, there are some central hub regions which play key roles in the structural human brain network based on T1 and diffusion tensor imaging (DTI) technology. Since most studies about hubs location method in the whole human brain network are mainly concerned with the local properties of each single node but not the global properties of all the directly connected nodes, a novel hubs location method based on global importance contribution evaluation index is proposed in this study. The number of streamlines (NoS) is fused with normalized fractional anisotropy (FA) for more comprehensive brain bioinformation. The brain region importance contribution matrix and information transfer efficiency value are constructed, respectively, and then by combining these two factors together we can calculate the importance value of each node and locate the hubs. Profiting from both local and global features of the nodes and the multi-information fusion of human brain biosignals, the experiment results show that this method can detect the brain hubs more accurately and reasonably compared with other methods. Furthermore, the proposed location method is used in impaired brain hubs connectivity analysis of schizophrenia patients and the results are in agreement with previous studies.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Zhenfu Wen ◽  
Marie-France Marin ◽  
Jennifer Urbano Blackford ◽  
Zhe Sage Chen ◽  
Mohammed R. Milad

AbstractTranslational models of fear conditioning and extinction have elucidated a core neural network involved in the learning, consolidation, and expression of conditioned fear and its extinction. Anxious or trauma-exposed brains are characterized by dysregulated neural activations within regions of this fear network. In this study, we examined how the functional MRI activations of 10 brain regions commonly activated during fear conditioning and extinction might distinguish anxious or trauma-exposed brains from controls. To achieve this, activations during four phases of a fear conditioning and extinction paradigm in 304 participants with or without a psychiatric diagnosis were studied. By training convolutional neural networks (CNNs) using task-specific brain activations, we reliably distinguished the anxious and trauma-exposed brains from controls. The performance of models decreased significantly when we trained our CNN using activations from task-irrelevant brain regions or from a brain network that is irrelevant to fear. Our results suggest that neuroimaging data analytics of task-induced brain activations within the fear network might provide novel prospects for development of brain-based psychiatric diagnosis.


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