scholarly journals Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms

2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Yongxin Li ◽  
Akihito Omori ◽  
Rachel L. Flores ◽  
Sheri Satterfield ◽  
Christine Nguyen ◽  
...  
Keyword(s):  
Genetic Basis ◽  
Developmental Stages ◽  
Sister Group ◽  
Body Plan ◽  
The Body ◽  
Last Common Ancestor ◽  
Evolution And Development ◽  
Gene Sets ◽  
Green Sea Urchin ◽  
Feather Star

AbstractEchinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japonica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bilaterality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya.

scholarly journals Ossicle development of the crinoid Florometra serratissima through larval stages

2017 ◽  
Vol 95 (3) ◽  
pp. 183-192 ◽  
Author(s):  
Ariane Comeau ◽  
Cory D. Bishop ◽  
Christopher B. Cameron
Keyword(s):  
Electron Microscopy ◽  
Scanning Electron Microscopy ◽  
Soft Tissues ◽  
Sister Group ◽  
Coralline Algae ◽  
Rapid Radiation ◽  
Larval Stages ◽  
Evolution And Development ◽  
Feather Star ◽  
Scanning Electron

Crinoids are the oldest living class of echinoderm and sister group to the remaining eleutherozoan clade and so are key to discussions on the evolution and development of the echinoderm skeleton. Here we present the intraspecific variation of ossicle development of the feather star Florometra serratissima (A.H. Clark, 1907) during its three larval stages: doliolaria, cystidean, and early pentacrinoid. To induce settlement, larvae were cultured on a sea table in glass bowls containing coralline algae. The soft tissues of 60 larvae were dissolved to isolate and to observe the ossicles with compound microscopy and scanning electron microscopy. From the late doliolaria stage to 56-day-old pentacrinoids, a total of four types of ossicle developed: oral plates, basal plates, columnar stalk ossicles, and an attachment disk. Occasionally, an additional plate was found under the basal plates, which may represent a vestigial infrabasal plate. The shape of the attachment disk was plastic to accommodate the substrate. Crinoid ossicle development is variable in size, shape, and number, and the timing of development is asynchronous; traits that may have contributed to the early rapid radiation and phenotypic disparity of echinoderms.

Molecular analysis of heparan sulfate biosynthetic enzyme machinery and characterization of heparan sulfate structure in Nematostella vectensis

2009 ◽  
Vol 419 (3) ◽  
pp. 585-593 ◽  
Author(s):  
Almir Feta ◽  
Anh-Tri Do ◽  
Fabian Rentzsch ◽  
Ulrich Technau ◽  
Marion Kusche-Gullberg
Keyword(s):  
Heparan Sulfate ◽  
Developmental Stages ◽  
Structural Complexity ◽  
Sea Anemone ◽  
The Body ◽  
Nematostella Vectensis ◽  
Last Common Ancestor ◽  
Protein Ligands ◽  
Enzyme Families

HS (heparan sulfate) proteoglycans are key regulators of vital processes in the body. HS chains with distinct sequences bind to various protein ligands, such as growth factors and morphogens, and thereby function as important regulators of protein gradient formation and signal transduction. HS is synthesized through the concerted action of many different ER (endoplasmic reticulum) and Golgi-resident enzymes. In higher organisms, many of these enzymes occur in multiple isoforms that differ in substrate specificity and spatial and temporal expression. In order to investigate how the structural complexity of HS has evolved, in the present study we focused on the starlet sea anemone (Nematostella vectensis), which belongs to the Anthozoa, which are considered to have retained many ancestral features. Members of all of the enzyme families involved in the generation and modification of HS were identified in Nematostella. Our results show that the enzymes are highly conserved throughout evolution, but the number of isoforms varies. Furthermore, the HS polymerases [Ext (exostosin) enzymes Ext1, Ext2 and Ext-like3] represent distinct subgroups, indicating that these three genes have already been present in the last common ancestor of Cnidaria and Bilateria. In situ hybridization showed up-regulation of certain enzymes in specific areas of the embryo at different developmental stages. The specific mRNA expression pattern of particular HS enzymes implies that they may play a specific role in HS modifications during larval development. Finally, biochemical analysis of Nematostella HS demonstrates that the sea anemone synthesizes a polysaccharide with a unique structure.

scholarly journals Expression patterns of signalling molecules and transcription factors in the early rabbit embryo and their significance for modelling amniote axis formation

2021 ◽  
Author(s):  
Ruben Plöger ◽  
Christoph Viebahn
Keyword(s):  
Transcription Factors ◽  
Expression Patterns ◽  
In Situ Hybridisation ◽  
Body Plan ◽  
The Body ◽  
Anchor Point ◽  
Axis Formation ◽  
Point Model ◽  
Signalling Molecules ◽  
Rabbit Embryo

AbstractThe anterior-posterior axis is a central element of the body plan and, during amniote gastrulation, forms through several transient domains with specific morphogenetic activities. In the chick, experimentally proven activity of signalling molecules and transcription factors lead to the concept of a ‘global positioning system’ for initial axis formation whereas in the (mammotypical) rabbit embryo, a series of morphological or molecular domains are part of a putative ‘three-anchor-point model’. Because circular expression patterns of genes involved in axis formation exist in both amniote groups prior to, and during, gastrulation and may thus be suited to reconcile these models, the expression patterns of selected genes known in the chick, namely the ones coding for the transcription factors eomes and tbx6, the signalling molecule wnt3 and the wnt inhibitor pkdcc, were analysed in the rabbit embryonic disc using in situ hybridisation and placing emphasis on their germ layer location. Peripheral wnt3 and eomes expression in all layers is found initially to be complementary to central pkdcc expression in the hypoblast during early axis formation. Pkdcc then appears — together with a posterior-anterior gradient in wnt3 and eomes domains — in the epiblast posteriorly before the emerging primitive streak is marked by pkdcc and tbx6 at its anterior and posterior extremities, respectively. Conserved circular expression patterns deduced from some of this data may point to shared mechanisms in amniote axis formation while the reshaping of localised gene expression patterns is discussed as part of the ‘three-anchor-point model’ for establishing the mammalian body plan.

scholarly journals Petiole-Lamina Transition Zone: A Functionally Crucial but Often Overlooked Leaf Trait

Plants ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 774
Author(s):  
Max Langer ◽  
Thomas Speck ◽  
Olga Speck
Keyword(s):  
Transition Zone ◽  
Three Dimensional ◽  
Spatial Arrangement ◽  
Body Plan ◽  
The Body ◽  
Vascular Bundles ◽  
Cross Sectional ◽  
Thin Sections ◽  
Transition Zones ◽  
The Cross

Although both the petiole and lamina of foliage leaves have been thoroughly studied, the transition zone between them has often been overlooked. We aimed to identify objectively measurable morphological and anatomical criteria for a generally valid definition of the petiole–lamina transition zone by comparing foliage leaves with various body plans (monocotyledons vs. dicotyledons) and spatial arrangements of petiole and lamina (two-dimensional vs. three-dimensional configurations). Cross-sectional geometry and tissue arrangement of petioles and transition zones were investigated via serial thin-sections and µCT. The changes in the cross-sectional geometries from the petiole to the transition zone and the course of the vascular bundles in the transition zone apparently depend on the spatial arrangement, while the arrangement of the vascular bundles in the petioles depends on the body plan. We found an exponential acropetal increase in the cross-sectional area and axial and polar second moments of area to be the defining characteristic of all transition zones studied, regardless of body plan or spatial arrangement. In conclusion, a variety of terms is used in the literature for describing the region between petiole and lamina. We prefer the term “petiole–lamina transition zone” to underline its three-dimensional nature and the integration of multiple gradients of geometry, shape, and size.

scholarly journals Natural barriers: waterfall transit by small flying animals

2020 ◽  
Vol 7 (8) ◽  
pp. 201185
Author(s):  
Victor M. Ortega-Jimenez ◽  
Eva C. Herbst ◽  
Michelle S. Leung ◽  
Robert Dudley
Keyword(s):  
Complex Dynamics ◽  
Sister Group ◽  
The Body ◽  
Heterogeneous Structure ◽  
Flight Behaviour ◽  
Physical Constraints ◽  
Physical Barriers ◽  
Translational Speed ◽  
Geomorphological Features ◽  
Stroke Amplitude

Waterfalls are conspicuous geomorphological features with heterogeneous structure, complex dynamics and multiphase flows. Swifts, dippers and starlings are well-known to nest behind waterfalls, and have been reported to fly through them. For smaller fliers, by contrast, waterfalls seem to represent impenetrable barriers, but associated physical constraints and the kinematic responses of volant animals during transit are unknown. Here, we describe the flight behaviour of hummingbirds (the sister group to the swifts) and of various insect taxa as they fly through an artificial sheet waterfall. We additionally launched plastic balls at different speeds at the waterfall so as to assess the inertial dependence of sheet penetration. Hummingbirds were able to penetrate the waterfall with reductions in both their translational speed, and stroke amplitude. The body tilted more vertically and exhibited greater rotations in roll, pitch and yaw, along with increases in tail spread and pitch. The much smaller plastic balls and some flies moving at speeds greater than 2.3 m s −1 and 1.6 m s −1 , respectively, also overcame effects of surface tension and water momentum and passed through the waterfall; objects with lower momentum, by contrast, entered the sheet but then fell along with the moving water. Waterfalls can thus represent impenetrable physical barriers for small and slow animal fliers, and may also serve to exclude both predators and parasites from nests of some avian taxa.

scholarly journals Scalable co-optimization of morphology and control in embodied machines

2018 ◽  
Vol 15 (143) ◽  
pp. 20170937 ◽  
Author(s):  
Nick Cheney ◽  
Josh Bongard ◽  
Vytas SunSpiral ◽  
Hod Lipson
Keyword(s):  
Embodied Cognition ◽  
Initial Conditions ◽  
Control Policy ◽  
Sensorimotor Control ◽  
Body Plan ◽  
The Body ◽  
Test Bed ◽  
Local Optima ◽  
Close Coupling ◽  
And Control

Evolution sculpts both the body plans and nervous systems of agents together over time. By contrast, in artificial intelligence and robotics, a robot's body plan is usually designed by hand, and control policies are then optimized for that fixed design. The task of simultaneously co-optimizing the morphology and controller of an embodied robot has remained a challenge. In psychology, the theory of embodied cognition posits that behaviour arises from a close coupling between body plan and sensorimotor control, which suggests why co-optimizing these two subsystems is so difficult: most evolutionary changes to morphology tend to adversely impact sensorimotor control, leading to an overall decrease in behavioural performance. Here, we further examine this hypothesis and demonstrate a technique for ‘morphological innovation protection’, which temporarily reduces selection pressure on recently morphologically changed individuals, thus enabling evolution some time to ‘readapt’ to the new morphology with subsequent control policy mutations. We show the potential for this method to avoid local optima and converge to similar highly fit morphologies across widely varying initial conditions, while sustaining fitness improvements further into optimization. While this technique is admittedly only the first of many steps that must be taken to achieve scalable optimization of embodied machines, we hope that theoretical insight into the cause of evolutionary stagnation in current methods will help to enable the automation of robot design and behavioural training—while simultaneously providing a test bed to investigate the theory of embodied cognition.

scholarly journals Seasonal occurrence of some larval stages of endoparasites in three cyprinids from the Nwanedi-Luphephe dams, the Limpopo River System, South Africa

2015 ◽  
Vol 52 (3) ◽  
pp. 229-235 ◽  
Author(s):  
E. M. Mbokane ◽  
J. Theron ◽  
W. J. Luus-Powell
Keyword(s):  
Developmental Stages ◽  
River System ◽  
Intestinal Wall ◽  
The Body ◽  
Seasonal Occurrence ◽  
Seasonal Fluctuations ◽  
Metazoan Parasites ◽  
Larval Stages ◽  
Parasite Communities ◽  
Third Stage

Abstract This study provides information on seasonal occurrence of developmental stages of endoparasites infecting three cyprinids in the Nwanedi-Luphephe dams, Limpopo River System. Labeobarbus marequensis (Smith, 1841), Barbus trimaculatus Peters, 1852 and Barbus radiatus Peters, 1853 were investigated seasonally from January 2008 to October 2008. The following larvae of metazoan parasites were collected: Diplostomum sp. from the eyes of L. marequensis and B. trimaculatus; Ornithodiplostomum sp. from the gills of B. trimaculatus; Posthodiplostomum sp. from muscle, skin and fins of B. trimaculatus and B. radiatus; third-stage Contracaecum larvae (L3) from the mesentery fats and on the liver lobes of L. marequensis and B. trimaculatus and gryporynchid cestode larvae from the outer intestinal wall of B. radiatus. All the flukes encountered were metacercariae. Diplostomum sp. and Contracaecum sp. dominated the parasite communities. Their prevalence exhibited seasonal fluctuations with maxima in summer. Factors likely to influence fish infection such as the body size of fish and their condition factors were also briefly considered in this study.

Developmental stages in the Digenea

Parasitology ◽  
1964 ◽  
Vol 54 (2) ◽  
pp. 295-312 ◽  
Author(s):  
Elon E. Byrd ◽  
William P. Maples
Keyword(s):  
Body Wall ◽  
Developmental Stages ◽  
Snail Host ◽  
The Body ◽  
Body Movements ◽  
Hatching Enzyme ◽  
Apical Papilla ◽  
Short Time ◽  
Membranous Body ◽  
Egg Capsule

The naturally oviposited egg of Dasymetra conferta is fully embryonated and it hatches only after it is ingested by the snail host, Physa spp.Hatching appears to be in response to some stimulus supplied by the living snail. The stimulus causes the larva to exercise a characteristic series of body movements and to liberate a granular sustance (hatching enzyme) from the larger pair of its cephalic glands. This enzyme reacts with the vitelline fluid to create pressure within the egg capsule, and with the cementum of the operculum, so that it may be lifted away. The larva's escape from the shell, therefore, is due to a combination of pressure and body movements.The hatched larva has a membranous body wall, supporting six epidermal plates, an apical papilla, two penetration glands and a central matrix (the presumptive brood mass).It lives for about an hour within the snail and during this time there is a reorganization of the central matrix which terminates in the formation of an 8-nucleated syncytial brood mass.The miracidial ‘case’, consisting of the body wall and the epidermal plates, ultimately ruptures to liberate the brood mass. Once the brood mass is free it penetrates through the gut wall in an incredibly short time.

Improved resolution of recalcitrant nodes in the animal phylogeny through the analysis of genome gene content and morphology

2021 ◽  
Author(s):  
Ksenia Juravel ◽  
Luis Porras ◽  
Sebastian Hoehna ◽  
Davide Pisani ◽  
Gert Wörheide
Keyword(s):  
Common Ancestor ◽  
Sister Group ◽  
The Other ◽  
Gene Content ◽  
Statistical Hypothesis ◽  
Phylogenetic Position ◽  
Last Common Ancestor ◽  
Statistical Hypothesis Testing ◽  
Animal Phylogeny ◽  
Phylogenetic Hypotheses

An accurate phylogeny of animals is needed to clarify their evolution, ecology, and impact on shaping the biosphere. Although multi-gene alignments of up to several hundred thousand amino acids are nowadays routinely used to test hypotheses of animal relationships, some nodes towards the root of the animal phylogeny are proving hard to resolve. While the relationships of the non-bilaterian lineages, primarily sponges (Porifera) and comb jellies (Ctenophora), have received much attention since more than a decade, controversies about the phylogenetic position of the worm-like bilaterian lineage Xenacoelomorpha and the monophyly of the "Superphylum" Deuterostomia have more recently emerged. Here we independently analyse novel genome gene content and morphological datasets to assess patterns of phylogenetic congruence with previous amino-acid derived phylogenetic hypotheses. Using statistical hypothesis testing, we show that both our datasets very strongly support sponges as the sister group of all the other animals, Xenoacoelomorpha as the sister group of the other Bilateria, and largely support monophyletic Deuterostomia. Based on these results, we conclude that the last common animal ancestor may have been a simple, filter-feeding organism without a nervous system and muscles, while the last common ancestor of Bilateria might have been a small, acoelomate-like worm without a through gut.

scholarly journals Early ontogenesis of the angelfish, Pterophyllum scalare Schultze, 1823 (Cichlidae)

2012 ◽  
Vol 10 (3) ◽  
pp. 567-576 ◽  
Author(s):  
Agata Korzelecka-Orkisz ◽  
Zuzanna Szalast ◽  
Dorota Pawlos ◽  
Izabella Smaruj ◽  
Adam Tañski ◽  
...  
Keyword(s):  
Developmental Stages ◽  
Artemia Salina ◽  
The Body ◽  
Pigment Cells ◽  
Alkaline Ph ◽  
Membrane Structures ◽  
Egg Membrane ◽  
Newly Hatched Larvae ◽  
Item Size ◽  
Pterophyllum Scalare

This study describes the egg membrane structures of angelfish (Pterophyllum scalare), morpho-physiological changes during angelfish embryogenesis from activation to hatching under optimal conditions (28°C; pH 6.8), the developing larvae and fry, the effect of alkaline pH on the early developmental stages of the species, the relationship between food item size and fry survival. Egg membranes (thin, transparent, 1.67-2.18 µm thick) are covered by a sticky substance. The amber-coloured angelfish eggs were oval in shape, with average diameters of 1.436 and 1.171 mm, i.e., a mean volume of 1.033 ± 0.095 mm³. The survival rate of embryos and larvae kept in water with an elevated, slightly alkaline pH was very low: as few as 2% of the embryos survived, while in the batch kept in optimal water conditions very few eggs died. The first larvae hatched after 1288 h of embryonic development. The newly hatched larvae measured on average 2.60 ± 0.093 mm and had large (0.64 ± 0.077 mm³) yolk sacs. They attached themselves to the substrate with a secretion of thin, viscous threads, which was released from glands situated on the top of the head. The glands vanished on day 5. The 1-day-old larvae showed the first pigment cells on the body and the eyes of the 2-day-olds were already fully pigmented. Between day 4 and 5 of larval life, the larvae began feeding on live food. The 23-day-old fry looked like a miniature versions of the adults. Mortality of the angelfish larvae during their first days after hatching was higher in those fed brine shrimp (Artemia salina) nauplii than those fed protozoans and rotifers.

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