scholarly journals High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Alexandra Schoenle ◽  
Manon Hohlfeld ◽  
Karoline Hermanns ◽  
Frédéric Mahé ◽  
Colomban de Vargas ◽  
...  

AbstractHeterotrophic protists (unicellular eukaryotes) form a major link from bacteria and algae to higher trophic levels in the sunlit ocean. Their role on the deep seafloor, however, is only fragmentarily understood, despite their potential key function for global carbon cycling. Using the approach of combined DNA metabarcoding and cultivation-based surveys of 11 deep-sea regions, we show that protist communities, mostly overlooked in current deep-sea foodweb models, are highly specific, locally diverse and have little overlap to pelagic communities. Besides traditionally considered foraminiferans, tiny protists including diplonemids, kinetoplastids and ciliates were genetically highly diverse considerably exceeding the diversity of metazoans. Deep-sea protists, including many parasitic species, represent thus one of the most diverse biodiversity compartments of the Earth system, forming an essential link to metazoans.

1999 ◽  
Vol 159 (1-4) ◽  
pp. 305-317 ◽  
Author(s):  
Siegfried Franck ◽  
Konrad Kossacki ◽  
Christine Bounama

2021 ◽  
Vol 118 (29) ◽  
pp. e2102674118
Author(s):  
Sarah K. Hu ◽  
Erica L. Herrera ◽  
Amy R. Smith ◽  
Maria G. Pachiadaki ◽  
Virginia P. Edgcomb ◽  
...  

Microbial eukaryotes (or protists) in marine ecosystems are a link between primary producers and all higher trophic levels, and the rate at which heterotrophic protistan grazers consume microbial prey is a key mechanism for carbon transport and recycling in microbial food webs. At deep-sea hydrothermal vents, chemosynthetic bacteria and archaea form the base of a food web that functions in the absence of sunlight, but the role of protistan grazers in these highly productive ecosystems is largely unexplored. Here, we pair grazing experiments with a molecular survey to quantify protistan grazing and to characterize the composition of vent-associated protists in low-temperature diffuse venting fluids from Gorda Ridge in the northeast Pacific Ocean. Results reveal protists exert higher predation pressure at vents compared to the surrounding deep seawater environment and may account for consuming 28 to 62% of the daily stock of prokaryotic biomass within discharging hydrothermal vent fluids. The vent-associated protistan community was more species rich relative to the background deep sea, and patterns in the distribution and co-occurrence of vent microbes provide additional insights into potential predator–prey interactions. Ciliates, followed by dinoflagellates, Syndiniales, rhizaria, and stramenopiles, dominated the vent protistan community and included bacterivorous species, species known to host symbionts, and parasites. Our findings provide an estimate of protistan grazing pressure within hydrothermal vent food webs, highlighting the important role that diverse protistan communities play in deep-sea carbon cycling.


2020 ◽  
Vol 48 (1) ◽  
pp. 1-20
Author(s):  
Inez Fung

The atmosphere is the synthesizer, transformer, and communicator of exchanges at its boundaries with the land and oceans. These exchanges depend on and, in turn, alter the states of the atmosphere, land, and oceans themselves. To a large extent, the interactions between the carbon cycle and climate have mapped, and will map, the trajectory of the Earth system. My quest to understand climate dynamics and the global carbon cycle has been propelled by new puzzles that emerge from each of the investigations and has led me to study subdisciplines of Earth science beyond my formal training. This article sketches my trek and the lessons I have learned. ▪  About half the CO2 emitted from combustion of fossil fuels and from cement production has remained airborne. Where are the contemporary carbon sinks? To what degree will these sinks evolve with, and in turn accelerate, climate change itself? ▪  The pursuit of these questions has been propelled by the integration of in situ and satellite observations of the atmosphere, land, and oceans, as well as by advances in theory and coupled climate–carbon cycle modeling. ▪  The urgency of climate change demands new approaches to cross-check national emission statistics.


Author(s):  
Han Dolman

This chapter discusses the fundamental aspects of biogeochemical cycles and their interactions with climate. It describes the context of the Earth system, from the geological cycles to the current climate. It also describes the organic and geological part of the global carbon cycle. Feedbacks are shown to comprise a key component of the Earth system, keeping it stable over geological time periods. Further examples of the interactions between biogeochemical cycles and climate include the rise of oxygen on the planet, the special position Earth takes in having water in liquid, gas and frozen forms, and the role of the greenhouse gas effect in maintaining this. The chapter also introduces the concepts of steady state and mean residence time and discusses non-linearity in the Earth system.


2021 ◽  
Vol 14 (1) ◽  
pp. 125-149
Author(s):  
Katherine A. Crichton ◽  
Jamie D. Wilson ◽  
Andy Ridgwell ◽  
Paul N. Pearson

Abstract. Temperature is a master parameter in the marine carbon cycle, exerting a critical control on the rate of biological transformation of a variety of solid and dissolved reactants and substrates. Although in the construction of numerical models of marine carbon cycling, temperature has been long recognised as a key parameter in the production and export of organic matter at the ocean surface, its role in the ocean interior is much less frequently accounted for. There, bacteria (primarily) transform sinking particulate organic matter (POM) into its dissolved constituents and consume dissolved oxygen (and/or other electron acceptors such as sulfate). The nutrients and carbon thereby released then become available for transport back to the surface, influencing biological productivity and atmospheric pCO2, respectively. Given the substantial changes in ocean temperature occurring in the past, as well as in light of current anthropogenic warming, appropriately accounting for the role of temperature in marine carbon cycling may be critical to correctly projecting changes in ocean deoxygenation and the strength of feedbacks on atmospheric pCO2. Here we extend and calibrate a temperature-dependent representation of marine carbon cycling in the cGENIE.muffin Earth system model, intended for both past and future climate applications. In this, we combine a temperature-dependent remineralisation scheme for sinking organic matter with a biological export production scheme that also includes a dependence on ambient seawater temperature. Via a parameter ensemble, we jointly calibrate the two parameterisations by statistically contrasting model-projected fields of nutrients, oxygen, and the stable carbon isotopic signature (δ13C) of dissolved inorganic carbon in the ocean with modern observations. We additionally explore the role of temperature in the creation and recycling of dissolved organic matter (DOM) and hence its impact on global carbon cycle dynamics. We find that for the present day, the temperature-dependent version shows a fit to the data that is as good as or better than the existing tuned non-temperature-dependent version of the cGENIE.muffin. The main impact of accounting for temperature-dependent remineralisation of POM is in driving higher rates of remineralisation in warmer waters, in turn driving a more rapid return of nutrients to the surface and thereby stimulating organic matter production. As a result, more POM is exported below 80 m but on average reaches shallower depths in middle- and low-latitude warmer waters compared to the standard model. Conversely, at higher latitudes, colder water temperature reduces the rate of nutrient resupply to the surface and POM reaches greater depth on average as a result of slower subsurface rates of remineralisation. Further adding temperature-dependent DOM processes changes this overall picture only a little, with a slight weakening of export production at higher latitudes. As an illustrative application of the new model configuration and calibration, we take the example of historical warming and briefly assess the implications for global carbon cycling of accounting for a more complete set of temperature-dependent processes in the ocean. We find that between the pre-industrial era (ca. 1700) and the present (year 2010), in response to a simulated air temperature increase of 0.9 ∘C and an associated projected mean ocean warming of 0.12 ∘C (0.6 ∘C in surface waters and 0.02 ∘C in deep waters), a reduction in particulate organic carbon (POC) export at 80 m of just 0.3 % occurs (or 0.7 % including a temperature-dependent DOM response). However, due to this increased recycling nearer the surface, the efficiency of the transfer of carbon away from the surface (at 80 m) to the deep ocean (at 1040 m) is reduced by 5 %. In contrast, with no assumed temperature-dependent processes impacting production or remineralisation of either POM or DOM, global POC export at 80 m falls by 2.9 % between the pre-industrial era and the present day as a consequence of ocean stratification and reduced nutrient resupply to the surface. Our analysis suggests that increased temperature-dependent nutrient recycling in the upper ocean has offset much of the stratification-induced restriction in its physical transport.


2021 ◽  
Author(s):  
Sarah K. Hu ◽  
Erica L. Herrera ◽  
Amy R. Smith ◽  
Maria G. Pachiadaki ◽  
Virginia P. Edgcomb ◽  
...  

AbstractMicrobial eukaryotes (or protists) in marine ecosystems are a link between microbial primary producers and all higher trophic levels. The rate at which heterotrophic protistan grazers consume microbial prey and recycle organic matter is an important factor that influences marine microbial food webs and carbon cycling. At deep-sea hydrothermal vents, chemosynthetic bacteria and archaea form the base of a food web that functions in the absence of sunlight, but the role of protistan grazers in these highly productive ecosystems is largely unexplored. Here, we pair grazing experiments with a molecular survey to quantify protistan grazing and to characterize the composition of vent-associated protists in low-temperature venting fluids from Gorda Ridge in the North East (NE) Pacific Ocean. Results reveal protists exert higher predation pressure at vents compared to the surrounding deep seawater environment and may account for consuming 28-62% of the daily stock of prokaryotic biomass within the hydrothermal vent food web. The vent-associated protistan community was more species rich relative to the background deep sea, and patterns in the distribution and co-occurrence of vent microbes provide additional insights into potential predator-prey interactions. Ciliates, followed by dinoflagellates, Syndiniales, rhizaria, and stramenopiles dominated the vent protist community and included bacterivorous species, species known to host symbionts, and parasites. Our findings provide an estimate of protistan grazing pressure within hydrothermal vent food webs, highlighting the role that diverse deep-sea protistan communities have in carbon cycling.SignificanceHeterotrophic protists are ubiquitous in all aquatic ecosystems and represent an important ecological link because they transfer organic carbon from primary producers to higher trophic levels. Here, we quantify the predator-prey trophic interaction among protistan grazers and microbial prey at multiple sites of hydrothermal venting near the Gorda Ridge spreading center in the NE Pacific Ocean. Grazing pressure was higher at the site of active diffuse flow and was carried out by a highly diverse assemblage of protistan species; elevated grazing rates are attributed to higher concentrations of chemosynthetic microorganisms and biological diversity localized to hydrothermal vent environments.


2020 ◽  
Vol 637 ◽  
pp. 225-235 ◽  
Author(s):  
MA Ladds ◽  
MH Pinkerton ◽  
E Jones ◽  
LM Durante ◽  
MR Dunn

Marine food webs are structured, in part, by predator gape size. Species found in deep-sea environments may have evolved such that they can consume prey of a wide range of sizes, to maximise resource intake in a low-productivity ecosystem. Estimates of gape size are central to some types of ecosystem model that determine which prey are available to predators, but cannot always be measured directly. Deep-sea species are hypothesized to have larger gape sizes than shallower-water species relative to their body size and, because of pronounced adaptive foraging behaviour, show only a weak relationship between gape size and trophic level. Here we present new data describing selective morphological measurements and gape sizes of 134 osteichthyan and chondrichthyan species from the deep sea (200-1300 m) off New Zealand. We describe how gape size (height, width and area) varied with factors including fish size, taxonomy (class and order within a class) and trophic level estimated from stable isotopes. For deep-sea species, there was a strong relationship between gape size and fish size, better predicted by body mass than total length, which varied by taxonomic group. Results show that predictions of gape size can be made from commonly measured morphological variables. No relationship between gape size and trophic level was found, likely a reflection of using trophic level estimates from stable isotopes as opposed to the commonly used estimates from FishBase. These results support the hypothesis that deep-sea fish are generalists within their environment, including suspected scavenging, even at the highest trophic levels.


Author(s):  
Joko Dwi Sugihartono

<p>in Indonesia is a region bordering the sea region of Indonesia determined by the law which included sea bed, land under it and water above it with the limit of 200miles. This is measured from Indonesian line of the sea.This whole time a lot of people see the shoreline as the sea border. This perspective makes us alienated and lack of knowledge to take advantage of the sea. This understanding also conjures the idea sea toll, to confirm that Indonesia is maritime country. Sea toll means building sea transportation with ships or sea logistic system which will serve nonstop back and forth from Sabang to Merauke. One of the factors to support this is by building ports (deep sea port) order to give faraway to big ships. A course that spreading as far as 5,000 kilometers or an eighth circumference of the earth One of the purposes of sea toll is to move the economy as efficient and evenly as possible. With the hope that, there will be ships back and forth on Indonesian water, so logistics cost will be cheap. That is why; sea toll is one of President Joko Widodo’s priorities which are also meant to develop Indonesia as maritime country and develop Indonesia as national unity. In addition sea toll can also be affirmation, that Indonesia is in every regions even if it is through ships.</p><p><strong>Keywords : Exclusive Economic Zone (ZEE) , Sea Toll , The Shaft Maritime, A Seaport</strong></p>


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