Insight into virus encapsulation mechanism through in silico interaction study between coat protein and RNA operator loops of Sesbania mosaic virus

2016 ◽  
Vol 12 (6) ◽  
pp. 1996-2009 ◽  
Author(s):  
Chetan Kumar Meena ◽  
Subhomoi Borkotoky ◽  
Ayaluru Murali

Viruses are parasite by nature and they are responsible for many diseases. Inhibitor development is very difficult for viruses due to their rapid mutative nature.

The Copley Medal is awarded to Dr A. Klug, F. R. S., in recognition of his outstanding contributions to our understanding of complex biological structures and the methods used for determining them. Together with D. Kaspar, Klug developed a theory that predicted the arrangement of sub-units in the protein shells of spherical viruses. This theory brought order and understanding into a confused field ; nearly all the observed structures of small spherical viruses, many of them elucidated by Klug and his collaborators, are consistent with it. After more than 20 years’ work on tobacco mosaic virus Klug and his colleagues solved the structure of its coat protein in atomic detail. They also elucidated the mechanisms by which the helical virus particle assembles itself from its RNA and its 2130 protein sub-units. Recently his group succeeded in crystallizing chromatin, and solved its structure at a resolution sufficient to see the double-helical DNA coiled around the spool of histone. Many of Klug’s successes were made possible by his introduction of Fourier image reconstruction methods into electron microscopy. Klug’s work is characterized by deep insight into the physics of diffraction and image formation and the intricate geometry of living matter.


Dissociation-reassociation experiments performed with turnip yellow mosaic virus in the presence of various RNAs and polynucleotides were used to investigate the degree of specificity and the contribution of the associated RNA moiety to the stability of TYMV. The results emphasize the importance of strategic cytosine residues spread along the RNA chain. Some insight into the contribution of the protein could be gained from comparison of TYMV and eggplant mosaic virus (EMV), a virus similar to TYMV although its top component contains low molecular mass RNAs able to bind various amino acids. Hydrophobic interactions between protein subunits are less important in EMV than in TYMV, and artificial capsids could be obtained from dissociated EMV coat protein. Whether the capsid is or is not the precursor of the virion in tymovirus morphogenesis is discussed.


1986 ◽  
Vol 227 (1249) ◽  
pp. 395-398

The Copley Medal is awarded to Dr A. Klug, F. R. S., in recognition of his outstanding contributions to our understanding of complex biological structures and the methods used for determining them. Together with D. Kaspar, Klug developed a theory that predicted the arrangement of sub-units in the protein shells of spherical viruses. This theory brought order and understanding into a confused field; nearly all the observed structures of small spherical viruses, many of them elucidated by Klug and his collaborators, are consistent with it. After more than 20 years’ work on tobacco mosaic virus Klug and his colleagues solved the structure of its coat protein in atomic detail. They also elucidated the mechanisms by which the helical virus particle assembles itself from its RNA and its 2130 protein sub-units. Recently his group succeeded in crystallizing chromatin, and solved its structure at a resolution sufficient to see the double-helical DNA coiled around the spool of histone. Many of Klug’s successes were made possible by his introduction of Fourier image reconstruction methods into electron microscopy. Klug’s work is characterized by deep insight into the physics of diffraction and image formation and the intricate geometry of living matter.


2021 ◽  
Author(s):  
Masoud Akbarimotlagh ◽  
Seyed Shahriar Arab ◽  
Peter Palukaitis ◽  
Masoud Shams-bakhsh

Abstract Background Cucumber mosaic virus (CMV) causes serious diseases in agricultural crops worldwide, predominantly in vegetable and ornamental plants. A critical interaction has been reported between the plant Ferredoxin I (Fd I) protein with the coat protein (CP) of the M strain of CMV (M-CMV) but not by the CP of the Q strain of CMV (Q-CMV). To ascertain the most likely symptom development model based on CMV CP interacting with the plant Fd I protein, further in silico investigation was performed on the CPs of the two strains (severe chlorosis symptoms (M-CMV) and mild symptoms (Q-CMV)). The biological assembly of the CMV CP is composed of hexameric and pentameric units. Result The results showed that there were significantly different interactions between pentameric and hexameric form of M and Q-CMV CPs with Fd I. Pentameric structural forms of M-CMV CP interact strongly with Fd I compared to pentameric structures of Q-CMV CP, while there were not significantly different in affinity for hexameric structures between M and Q-CMV CPs. Conclusion Accordingly, it can be deduced that probably pentameric structures of M-CMV (higher pathogenicity) CP block activation of plant Fd I protein. Therefore, it can be concluded that trapping Fd I in the complex of pentameric structures can lead to inhibition of the activity of plant Fd I in the photosynthetic electron transport chain leading the severe symptom development seen in M-CMV infected plants but not in Q-CMV infected plants. It seems likely that any factor that inhibits the interaction of CMV CPs with plant Fd I can prevent this symptom development.


Planta Medica ◽  
2007 ◽  
Vol 73 (09) ◽  
Author(s):  
JM Rollinger ◽  
TM Steindl ◽  
K Anrain ◽  
EP Ellmerer ◽  
M Schmidtke ◽  
...  

2021 ◽  
Vol 45 (10) ◽  
pp. 4756-4765
Author(s):  
Daoxing Chen ◽  
Liting Zhang ◽  
Yanan Liu ◽  
Jiali Song ◽  
Jingwen Guo ◽  
...  

EGFR L792Y/F/H mutation makes it difficult for Osimertinib to recognize ATP pockets.


2021 ◽  
Vol 3 (1) ◽  
Author(s):  
Zhi-Yong Yan ◽  
Xiao-Jie Xu ◽  
Le Fang ◽  
Chao Geng ◽  
Yan-Ping Tian ◽  
...  

AbstractCoat protein (CP) is required for potyviruses to move and establish a systemic infection in plants. π-stackings formed by aromatic residues play critical roles in maintaining protein stability and functions. As we know, many aromatic residues located in the core region of potyvirus CPs are conserved. However, their roles in potyvirus infection remain largely unknown. Here, through analysis of the three-dimensional model of the tobacco vein banding mosaic virus (TVBMV; genus Potyvirus) CP, 16 aromatic residues were predicated to form π-stackings. The results of transient expression experiments demonstrated that deletion of any of these 16 aromatic residues reduced CP accumulation. Infectivity assays showed that deletion of any of these aromatic residues in the TVBMV infectious clone abolished cell-to-cell movement and reduced replication of the virus. Substitution of Y105 and Y147 individually with non-aromatic residues alanine or glycine reduced CP accumulation, virus replication, and abolished the ability of TVBMV to move intercellularly, while substitution of these two residues individually with aromatic residues phenylalanine or tryptophan, had no or little effect on CP accumulation and TVBMV systemic movement and replication. Similar results were obtained from the CP mutants of watermelon mosaic virus (WMV, genus Potyvirus). Taken together, our results demonstrate that multiple aromatic residues in CP are involved in potyvirus movement by forming π-stackings to maintain CP accumulation.


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